Wall clock time and date at job start Wed Apr 1 2020 00:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 110.88686 * 2 1 4 4 C 1.34775 * 120.00488 * 300.70314 * 3 2 1 5 5 O 1.21289 * 119.99607 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00489 * 179.97438 * 4 3 2 7 7 C 1.52996 * 109.47142 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.47142 * 180.02562 * 7 6 4 9 9 C 1.34237 * 126.50263 * 265.02947 * 8 7 6 10 10 N 1.36835 * 109.92789 * 179.97438 * 9 8 7 11 11 H 0.97001 * 125.06174 * 180.02562 * 10 9 8 12 12 C 1.37684 * 109.87655 * 359.97438 * 10 9 8 13 13 C 1.39124 * 133.51113 * 180.02562 * 12 10 9 14 14 C 1.37750 * 119.78152 * 180.02562 * 13 12 10 15 15 C 1.38827 * 120.66438 * 359.96024 * 14 13 12 16 16 C 1.36627 * 120.53032 * 0.03878 * 15 14 13 17 17 C 1.39627 * 119.76425 * 359.97438 * 16 15 14 18 18 C 1.55154 * 111.00577 * 123.88260 * 2 1 3 19 19 C 1.54321 * 102.94234 * 153.61540 * 18 2 1 20 20 N 1.47019 * 107.27261 * 337.80333 * 19 18 2 21 21 C 1.36931 * 125.64862 * 178.97668 * 20 19 18 22 22 H 1.07997 * 119.99992 * 179.97438 * 21 20 19 23 23 C 1.38814 * 120.00328 * 359.97438 * 21 20 19 24 24 N 1.31620 * 119.99481 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00525 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46965 * 89.99921 * 25 23 21 27 27 H 1.48496 * 109.47234 * 210.00112 * 25 23 21 28 28 H 1.48495 * 109.47017 * 330.00321 * 25 23 21 29 29 C 1.47525 * 108.71572 * 358.94864 * 20 19 18 30 30 H 1.09005 * 109.47252 * 59.29682 * 1 2 3 31 31 H 1.09001 * 109.47153 * 179.29882 * 1 2 3 32 32 H 1.09001 * 109.47265 * 299.29764 * 1 2 3 33 33 H 0.97000 * 119.99855 * 120.69913 * 3 2 1 34 34 H 1.08996 * 109.46826 * 60.00014 * 6 4 3 35 35 H 1.08994 * 109.47176 * 300.00288 * 6 4 3 36 36 H 1.09000 * 109.47502 * 60.00209 * 7 6 4 37 37 H 1.09003 * 109.47270 * 300.00163 * 7 6 4 38 38 H 1.07997 * 125.03500 * 0.23365 * 9 8 7 39 39 H 1.08000 * 120.10790 * 359.97438 * 13 12 10 40 40 H 1.07997 * 119.66202 * 179.97438 * 14 13 12 41 41 H 1.08007 * 119.73585 * 180.02562 * 15 14 13 42 42 H 1.08003 * 120.11567 * 179.97438 * 16 15 14 43 43 H 1.09006 * 110.71787 * 271.98148 * 18 2 1 44 44 H 1.08997 * 110.71628 * 35.24644 * 18 2 1 45 45 H 1.09002 * 109.88151 * 97.22717 * 19 18 2 46 46 H 1.09008 * 109.87639 * 218.38916 * 19 18 2 47 47 H 0.97002 * 119.99945 * 180.02562 * 24 23 21 48 48 H 1.08997 * 110.37164 * 265.30412 * 29 20 19 49 49 H 1.08998 * 110.41318 * 142.94665 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7358 2.2109 -1.0035 5 8 1.0182 1.8357 -1.9064 6 6 2.2726 3.6190 -1.0032 7 6 1.7670 4.3579 -2.2439 8 6 2.3043 5.7658 -2.2439 9 6 1.6806 6.8585 -1.7759 10 7 2.4771 7.9583 -1.9447 11 1 2.2417 8.8623 -1.6832 12 6 3.6629 7.5906 -2.5400 13 6 4.7984 8.2945 -2.9284 14 6 5.8500 7.6263 -3.5157 15 6 5.7897 6.2551 -3.7242 16 6 4.6844 5.5442 -3.3506 17 6 3.6067 6.2014 -2.7537 18 6 2.0862 -0.8075 1.2025 19 6 3.4679 -1.2730 0.6968 20 7 3.4280 -1.2422 -0.7726 21 6 4.4653 -1.5653 -1.6060 22 1 4.3349 -1.5107 -2.6766 23 6 5.6845 -1.9631 -1.0747 24 7 5.8436 -2.0292 0.2302 25 14 7.0994 -2.4047 -2.2116 26 1 7.9025 -1.1887 -2.4976 27 1 7.9596 -3.4238 -1.5586 28 1 6.5608 -2.9523 -3.4825 29 6 2.0853 -0.8061 -1.2007 30 1 -0.3634 0.5247 -0.8836 31 1 -0.3633 -1.0276 -0.0126 32 1 -0.3634 0.5029 0.8962 33 1 2.6259 1.6689 0.7223 34 1 3.3622 3.5924 -1.0155 35 1 1.9320 4.1375 -0.1071 36 1 0.6774 4.3845 -2.2321 37 1 2.1080 3.8392 -3.1399 38 1 0.6978 6.8676 -1.3284 39 1 4.8547 9.3615 -2.7706 40 1 6.7303 8.1747 -3.8168 41 1 6.6232 5.7462 -4.1857 42 1 4.6445 4.4777 -3.5163 43 1 2.1915 -0.1693 2.0799 44 1 1.4471 -1.6630 1.4211 45 1 4.2425 -0.5981 1.0609 46 1 3.6658 -2.2882 1.0411 47 1 6.6956 -2.3068 0.6015 48 1 1.4522 -1.6701 -1.4027 49 1 2.1554 -0.1713 -2.0839 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733415364.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:19 Heat of formation + Delta-G solvation = 40.271513 kcal Electronic energy + Delta-G solvation = -29476.399370 eV Core-core repulsion = 25597.066424 eV Total energy + Delta-G solvation = -3879.332946 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.37211 -39.72777 -37.34501 -36.98324 -34.13793 -33.78243 -31.90510 -31.01715 -29.94371 -29.40616 -28.69766 -28.35275 -25.61965 -24.52487 -23.44693 -22.92951 -21.85584 -20.63852 -20.00301 -19.32149 -18.89443 -17.90262 -17.04399 -16.51524 -16.30412 -15.56089 -15.44962 -15.19473 -14.65418 -14.56508 -14.18897 -13.91367 -13.78886 -13.75755 -13.36791 -13.23185 -12.79369 -12.53626 -12.28808 -12.04961 -11.92011 -11.82565 -11.80367 -11.71946 -11.62241 -11.57211 -11.00651 -10.85664 -10.82268 -10.67229 -10.31405 -10.29443 -10.03397 -9.92960 -9.68394 -9.60405 -9.09849 -8.58216 -8.42977 -8.31799 -7.72952 -6.74437 -5.65864 -2.97352 1.03984 1.55142 2.54474 2.97669 3.11901 3.44028 3.49394 3.51283 3.66868 3.86069 4.55631 4.62369 4.68721 4.86039 5.01464 5.07866 5.15595 5.21224 5.25067 5.39709 5.43954 5.46605 5.53210 5.54610 5.67908 5.72644 5.77984 5.79134 5.84086 5.94094 6.08333 6.20264 6.21423 6.21913 6.28134 6.42343 6.42483 6.46286 6.55330 6.60893 6.64261 6.72335 6.75748 6.88636 7.07702 7.23968 7.37923 7.59820 7.61822 7.85179 8.04266 8.31399 8.73365 9.28872 9.89028 10.55466 11.46237 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009875 B = 0.003156 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.807252 B = 8869.178634 C =11083.647337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.157 3.843 3 N -0.703 5.703 4 C 0.516 3.484 5 O -0.545 6.545 6 C -0.134 4.134 7 C -0.027 4.027 8 C -0.160 4.160 9 C 0.046 3.954 10 N -0.598 5.598 11 H 0.413 0.587 12 C 0.094 3.906 13 C -0.136 4.136 14 C -0.099 4.099 15 C -0.149 4.149 16 C -0.064 4.064 17 C -0.102 4.102 18 C -0.147 4.147 19 C 0.178 3.822 20 N -0.603 5.603 21 C -0.220 4.220 22 H 0.076 0.924 23 C -0.010 4.010 24 N -0.925 5.925 25 Si 0.909 3.091 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.132 3.868 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.397 0.603 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.169 0.831 39 H 0.116 0.884 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.045 0.955 46 H 0.042 0.958 47 H 0.250 0.750 48 H 0.023 0.977 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.845 20.865 -0.025 22.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.070 3.930 3 N -0.353 5.353 4 C 0.302 3.698 5 O -0.423 6.423 6 C -0.174 4.174 7 C -0.065 4.065 8 C -0.168 4.168 9 C -0.079 4.079 10 N -0.201 5.201 11 H 0.250 0.750 12 C -0.013 4.013 13 C -0.157 4.157 14 C -0.118 4.118 15 C -0.168 4.168 16 C -0.083 4.083 17 C -0.107 4.107 18 C -0.186 4.186 19 C 0.053 3.947 20 N -0.329 5.329 21 C -0.348 4.348 22 H 0.094 0.906 23 C -0.206 4.206 24 N -0.573 5.573 25 Si 0.740 3.260 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.207 1.207 29 C 0.006 3.994 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.231 0.769 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.186 0.814 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.041 0.959 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.200 20.598 -0.606 22.179 hybrid contribution 1.134 0.344 0.089 1.188 sum -7.067 20.942 -0.517 22.108 Atomic orbital electron populations 1.22001 0.94498 1.02010 1.02317 1.21446 0.92476 0.81145 0.97936 1.45845 1.51520 1.12220 1.25753 1.20539 0.80481 0.87189 0.81585 1.90633 1.37939 1.77947 1.35750 1.21646 1.02858 0.92733 1.00171 1.19608 1.00194 0.89028 0.97673 1.20346 0.94234 0.95241 1.06937 1.21614 0.97058 0.85437 1.03810 1.41691 1.14170 1.09759 1.54481 0.75029 1.18263 0.88445 0.94325 1.00263 1.19977 0.92383 0.98989 1.04375 1.20805 0.97617 0.94559 0.98809 1.20675 0.98686 0.94190 1.03241 1.20413 0.91764 0.99966 0.96152 1.19135 0.95437 0.92180 1.03898 1.23226 1.00494 0.98896 0.95992 1.21137 0.89977 0.99811 0.83735 1.44459 1.07788 1.78899 1.01768 1.19065 0.89366 1.37411 0.89005 0.90624 1.24751 0.97720 1.02118 0.95984 1.69951 1.24022 1.54214 1.09146 0.86142 0.82417 0.77779 0.79626 1.21698 1.21764 1.20743 1.21891 0.87484 0.94822 0.95249 0.90702 0.92083 0.93337 0.76897 0.88959 0.89547 0.90620 0.90324 0.81391 0.86577 0.85950 0.85974 0.85714 0.91858 0.91039 0.93696 0.93953 0.93935 0.95891 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.57 37.16 0.32 -2.00 16 2 C 0.16 2.80 0.82 -129.67 -0.11 2.69 16 3 N -0.70 -11.44 5.18 -45.62 -0.24 -11.68 16 4 C 0.52 8.32 7.21 -10.99 -0.08 8.24 16 5 O -0.54 -10.33 12.79 5.55 0.07 -10.26 16 6 C -0.13 -1.68 5.68 -27.88 -0.16 -1.84 16 7 C -0.03 -0.33 5.03 -27.88 -0.14 -0.47 16 8 C -0.16 -1.86 5.57 -102.71 -0.57 -2.43 16 9 C 0.05 0.42 11.73 -16.73 -0.20 0.22 16 10 N -0.60 -5.13 6.07 -10.65 -0.06 -5.19 16 11 H 0.41 2.18 8.96 -40.82 -0.37 1.81 16 12 C 0.09 1.05 7.28 -83.99 -0.61 0.44 16 13 C -0.14 -1.36 10.08 -39.43 -0.40 -1.75 16 14 C -0.10 -0.99 10.01 -39.54 -0.40 -1.39 16 15 C -0.15 -1.68 9.97 -39.95 -0.40 -2.08 16 16 C -0.06 -0.82 10.05 -39.65 -0.40 -1.22 16 17 C -0.10 -1.30 6.35 -105.14 -0.67 -1.97 16 18 C -0.15 -2.65 5.98 -24.90 -0.15 -2.80 16 19 C 0.18 4.25 5.36 -3.07 -0.02 4.23 16 20 N -0.60 -15.60 3.40 -169.99 -0.58 -16.18 16 21 C -0.22 -6.28 10.28 -15.06 -0.15 -6.43 16 22 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 23 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 24 N -0.92 -27.17 10.31 55.49 0.57 -26.59 16 25 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 29 C 0.13 2.95 6.14 -2.47 -0.02 2.93 16 30 H 0.07 1.26 6.23 -51.93 -0.32 0.94 16 31 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.40 5.79 8.50 -40.82 -0.35 5.45 16 34 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 37 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 38 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 42 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 43 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 44 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 45 H 0.04 1.17 7.38 -51.93 -0.38 0.78 16 46 H 0.04 1.13 7.51 -51.92 -0.39 0.74 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.02 0.52 8.03 -51.93 -0.42 0.10 16 49 H 0.05 1.27 6.59 -51.93 -0.34 0.93 16 LS Contribution 394.71 15.07 5.95 5.95 Total: -1.00 -34.13 394.71 -11.14 -45.27 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -7.60 Total: 7.20 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -4.23 Total: -6.03 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.31 Total: -59.64 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.07 Total: -10.26 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.13 -11.14 -45.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733415364.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.543 kcal (2) G-P(sol) polarization free energy of solvation -34.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds