Wall clock time and date at job start Wed Apr 1 2020 00:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 110.88686 * 2 1 4 4 C 1.34775 * 120.00488 * 300.70314 * 3 2 1 5 5 O 1.21289 * 119.99607 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00489 * 179.97438 * 4 3 2 7 7 C 1.52996 * 109.47142 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.47142 * 180.02562 * 7 6 4 9 9 C 1.34237 * 126.50263 * 265.02947 * 8 7 6 10 10 N 1.36835 * 109.92789 * 179.97438 * 9 8 7 11 11 H 0.97001 * 125.06174 * 180.02562 * 10 9 8 12 12 C 1.37684 * 109.87655 * 359.97438 * 10 9 8 13 13 C 1.39124 * 133.51113 * 180.02562 * 12 10 9 14 14 C 1.37750 * 119.78152 * 180.02562 * 13 12 10 15 15 C 1.38827 * 120.66438 * 359.96024 * 14 13 12 16 16 C 1.36627 * 120.53032 * 0.03878 * 15 14 13 17 17 C 1.39627 * 119.76425 * 359.97438 * 16 15 14 18 18 C 1.55154 * 111.00577 * 123.88260 * 2 1 3 19 19 C 1.54321 * 102.94234 * 153.61540 * 18 2 1 20 20 N 1.47019 * 107.27261 * 337.80333 * 19 18 2 21 21 C 1.36931 * 125.64862 * 178.97668 * 20 19 18 22 22 H 1.07997 * 119.99992 * 179.97438 * 21 20 19 23 23 C 1.38814 * 120.00328 * 359.97438 * 21 20 19 24 24 N 1.31620 * 119.99481 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00525 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46965 * 89.99921 * 25 23 21 27 27 H 1.48496 * 109.47234 * 210.00112 * 25 23 21 28 28 H 1.48495 * 109.47017 * 330.00321 * 25 23 21 29 29 C 1.47525 * 108.71572 * 358.94864 * 20 19 18 30 30 H 1.09005 * 109.47252 * 59.29682 * 1 2 3 31 31 H 1.09001 * 109.47153 * 179.29882 * 1 2 3 32 32 H 1.09001 * 109.47265 * 299.29764 * 1 2 3 33 33 H 0.97000 * 119.99855 * 120.69913 * 3 2 1 34 34 H 1.08996 * 109.46826 * 60.00014 * 6 4 3 35 35 H 1.08994 * 109.47176 * 300.00288 * 6 4 3 36 36 H 1.09000 * 109.47502 * 60.00209 * 7 6 4 37 37 H 1.09003 * 109.47270 * 300.00163 * 7 6 4 38 38 H 1.07997 * 125.03500 * 0.23365 * 9 8 7 39 39 H 1.08000 * 120.10790 * 359.97438 * 13 12 10 40 40 H 1.07997 * 119.66202 * 179.97438 * 14 13 12 41 41 H 1.08007 * 119.73585 * 180.02562 * 15 14 13 42 42 H 1.08003 * 120.11567 * 179.97438 * 16 15 14 43 43 H 1.09006 * 110.71787 * 271.98148 * 18 2 1 44 44 H 1.08997 * 110.71628 * 35.24644 * 18 2 1 45 45 H 1.09002 * 109.88151 * 97.22717 * 19 18 2 46 46 H 1.09008 * 109.87639 * 218.38916 * 19 18 2 47 47 H 0.97002 * 119.99945 * 180.02562 * 24 23 21 48 48 H 1.08997 * 110.37164 * 265.30412 * 29 20 19 49 49 H 1.08998 * 110.41318 * 142.94665 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7358 2.2109 -1.0035 5 8 1.0182 1.8357 -1.9064 6 6 2.2726 3.6190 -1.0032 7 6 1.7670 4.3579 -2.2439 8 6 2.3043 5.7658 -2.2439 9 6 1.6806 6.8585 -1.7759 10 7 2.4771 7.9583 -1.9447 11 1 2.2417 8.8623 -1.6832 12 6 3.6629 7.5906 -2.5400 13 6 4.7984 8.2945 -2.9284 14 6 5.8500 7.6263 -3.5157 15 6 5.7897 6.2551 -3.7242 16 6 4.6844 5.5442 -3.3506 17 6 3.6067 6.2014 -2.7537 18 6 2.0862 -0.8075 1.2025 19 6 3.4679 -1.2730 0.6968 20 7 3.4280 -1.2422 -0.7726 21 6 4.4653 -1.5653 -1.6060 22 1 4.3349 -1.5107 -2.6766 23 6 5.6845 -1.9631 -1.0747 24 7 5.8436 -2.0292 0.2302 25 14 7.0994 -2.4047 -2.2116 26 1 7.9025 -1.1887 -2.4976 27 1 7.9596 -3.4238 -1.5586 28 1 6.5608 -2.9523 -3.4825 29 6 2.0853 -0.8061 -1.2007 30 1 -0.3634 0.5247 -0.8836 31 1 -0.3633 -1.0276 -0.0126 32 1 -0.3634 0.5029 0.8962 33 1 2.6259 1.6689 0.7223 34 1 3.3622 3.5924 -1.0155 35 1 1.9320 4.1375 -0.1071 36 1 0.6774 4.3845 -2.2321 37 1 2.1080 3.8392 -3.1399 38 1 0.6978 6.8676 -1.3284 39 1 4.8547 9.3615 -2.7706 40 1 6.7303 8.1747 -3.8168 41 1 6.6232 5.7462 -4.1857 42 1 4.6445 4.4777 -3.5163 43 1 2.1915 -0.1693 2.0799 44 1 1.4471 -1.6630 1.4211 45 1 4.2425 -0.5981 1.0609 46 1 3.6658 -2.2882 1.0411 47 1 6.6956 -2.3068 0.6015 48 1 1.4522 -1.6701 -1.4027 49 1 2.1554 -0.1713 -2.0839 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733415364.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:17 Heat of formation + Delta-G solvation = 19.352478 kcal Electronic energy + Delta-G solvation = -29477.306487 eV Core-core repulsion = 25597.066424 eV Total energy + Delta-G solvation = -3880.240064 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.15244 -41.13465 -38.91353 -37.79303 -35.66719 -35.00912 -33.60453 -32.14595 -31.44932 -30.35929 -30.19485 -29.29618 -27.50209 -25.75514 -25.06240 -23.72448 -22.64783 -22.28796 -21.55930 -20.38311 -20.14833 -18.95431 -18.68857 -17.72307 -17.28929 -17.05335 -16.63697 -16.45434 -16.25245 -15.62967 -15.57884 -15.25773 -15.00648 -14.80168 -14.71088 -14.37935 -14.07139 -13.88014 -13.54450 -13.43671 -13.31792 -13.24842 -12.99738 -12.95616 -12.82038 -12.72500 -12.55060 -12.52849 -12.11013 -12.02299 -11.97076 -11.90112 -11.68086 -11.58385 -11.50045 -10.71265 -10.61514 -10.37915 -9.88724 -9.12312 -8.85793 -8.52243 -7.85807 -5.19231 0.23065 0.71085 1.43162 1.44486 1.53396 1.74025 1.82990 2.29243 2.43204 2.48183 2.99902 3.32382 3.60276 3.72072 3.83593 3.90752 3.97070 4.07963 4.19358 4.22218 4.23015 4.32148 4.41060 4.50199 4.56973 4.65788 4.71354 4.74981 4.76710 4.89748 4.90861 4.93247 4.95014 5.00270 5.05510 5.09325 5.11749 5.26638 5.34031 5.40331 5.43145 5.60053 5.66554 5.72744 5.73932 5.80752 5.83013 5.87924 6.20189 6.27076 6.75631 6.78790 7.12017 7.44894 7.77878 8.42318 9.23992 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009875 B = 0.003156 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.807252 B = 8869.178634 C =11083.647337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.167 3.833 3 N -0.703 5.703 4 C 0.511 3.489 5 O -0.576 6.576 6 C -0.121 4.121 7 C -0.015 4.015 8 C -0.197 4.197 9 C 0.073 3.927 10 N -0.584 5.584 11 H 0.432 0.568 12 C 0.079 3.921 13 C -0.131 4.131 14 C -0.107 4.107 15 C -0.156 4.156 16 C -0.098 4.098 17 C -0.128 4.128 18 C -0.129 4.129 19 C 0.186 3.814 20 N -0.621 5.621 21 C -0.242 4.242 22 H 0.067 0.933 23 C -0.058 4.058 24 N -0.945 5.945 25 Si 0.972 3.028 26 H -0.286 1.286 27 H -0.289 1.289 28 H -0.275 1.275 29 C 0.128 3.872 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.407 0.593 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.207 0.793 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.129 0.871 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.017 0.983 46 H 0.007 0.993 47 H 0.247 0.753 48 H 0.022 0.978 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.014 23.551 1.288 25.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.080 3.920 3 N -0.354 5.354 4 C 0.299 3.701 5 O -0.456 6.456 6 C -0.161 4.161 7 C -0.053 4.053 8 C -0.204 4.204 9 C -0.054 4.054 10 N -0.188 5.188 11 H 0.272 0.728 12 C -0.028 4.028 13 C -0.152 4.152 14 C -0.126 4.126 15 C -0.175 4.175 16 C -0.116 4.116 17 C -0.133 4.133 18 C -0.167 4.167 19 C 0.061 3.939 20 N -0.347 5.347 21 C -0.371 4.371 22 H 0.085 0.915 23 C -0.252 4.252 24 N -0.594 5.594 25 Si 0.801 3.199 26 H -0.213 1.213 27 H -0.215 1.215 28 H -0.200 1.200 29 C 0.002 3.998 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.242 0.758 34 H 0.100 0.900 35 H 0.138 0.862 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.224 0.776 39 H 0.164 0.836 40 H 0.167 0.833 41 H 0.147 0.853 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.108 0.892 45 H 0.035 0.965 46 H 0.025 0.975 47 H 0.057 0.943 48 H 0.039 0.961 49 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -9.384 23.326 0.718 25.153 hybrid contribution 1.498 -0.473 -0.375 1.615 sum -7.886 22.853 0.343 24.178 Atomic orbital electron populations 1.21913 0.91943 1.02884 1.03033 1.21312 0.94119 0.81372 0.95215 1.45867 1.51662 1.11561 1.26274 1.21162 0.79796 0.88330 0.80777 1.90620 1.39439 1.78751 1.36757 1.21612 1.01941 0.90680 1.01884 1.19407 1.00370 0.89560 0.96013 1.20290 0.94727 0.95502 1.09891 1.22114 0.97652 0.84446 1.01139 1.41711 1.13103 1.10678 1.53274 0.72822 1.18464 0.89706 0.93773 1.00900 1.20364 0.91549 1.00431 1.02837 1.21131 0.98833 0.93962 0.98723 1.20895 0.98380 0.95259 1.03012 1.20443 0.93300 0.99435 0.98450 1.19432 0.95927 0.93543 1.04404 1.23099 0.96756 1.00035 0.96851 1.20933 0.92983 0.97308 0.82684 1.44706 1.08496 1.78849 1.02626 1.19318 0.90744 1.37783 0.89284 0.91491 1.25506 0.99887 1.02281 0.97494 1.70148 1.24216 1.54626 1.10426 0.85171 0.79284 0.77419 0.78046 1.21283 1.21512 1.20033 1.22011 0.86230 0.94986 0.96556 0.92142 0.91124 0.90439 0.75789 0.89995 0.86192 0.89923 0.93660 0.77648 0.83562 0.83308 0.85311 0.87670 0.88441 0.89248 0.96462 0.97487 0.94334 0.96054 0.95394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 8.57 71.98 0.62 -3.38 16 2 C 0.17 5.80 0.82 5.00 0.00 5.80 16 3 N -0.70 -22.29 5.18 -416.65 -2.16 -24.45 16 4 C 0.51 16.46 7.21 87.66 0.63 17.10 16 5 O -0.58 -22.28 12.79 -3.06 -0.04 -22.32 16 6 C -0.12 -3.01 5.68 29.85 0.17 -2.84 16 7 C -0.01 -0.37 5.03 29.85 0.15 -0.22 16 8 C -0.20 -4.45 5.57 -18.63 -0.10 -4.56 16 9 C 0.07 1.12 11.73 83.00 0.97 2.09 16 10 N -0.58 -8.25 6.07 -187.61 -1.14 -9.39 16 11 H 0.43 2.89 8.96 -92.71 -0.83 2.06 16 12 C 0.08 1.64 7.28 39.03 0.28 1.92 16 13 C -0.13 -2.33 10.08 22.37 0.23 -2.11 16 14 C -0.11 -2.02 10.01 22.30 0.22 -1.80 16 15 C -0.16 -3.65 9.97 22.03 0.22 -3.43 16 16 C -0.10 -2.69 10.05 22.23 0.22 -2.47 16 17 C -0.13 -3.33 6.35 -20.20 -0.13 -3.45 16 18 C -0.13 -4.42 5.98 31.78 0.19 -4.23 16 19 C 0.19 9.03 5.36 86.73 0.47 9.49 16 20 N -0.62 -33.17 3.40 -691.74 -2.35 -35.52 16 21 C -0.24 -14.34 10.28 84.03 0.86 -13.48 16 22 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 23 C -0.06 -3.42 5.49 84.86 0.47 -2.95 16 24 N -0.95 -57.05 10.31 21.65 0.22 -56.83 16 25 Si 0.97 47.42 29.55 68.60 2.03 49.44 16 26 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 27 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 28 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 29 C 0.13 5.86 6.14 86.84 0.53 6.39 16 30 H 0.06 1.95 6.23 -2.38 -0.01 1.94 16 31 H 0.07 1.89 8.13 -2.39 -0.02 1.87 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.41 11.31 8.50 -92.71 -0.79 10.53 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.08 1.90 8.10 -2.39 -0.02 1.88 16 37 H 0.04 1.40 8.10 -2.39 -0.02 1.38 16 38 H 0.21 1.49 8.06 -2.91 -0.02 1.47 16 39 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 41 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 42 H 0.11 3.11 8.06 -2.91 -0.02 3.09 16 43 H 0.10 2.72 8.07 -2.38 -0.02 2.70 16 44 H 0.09 2.79 8.04 -2.39 -0.02 2.77 16 45 H 0.02 0.92 7.38 -2.39 -0.02 0.90 16 46 H 0.01 0.38 7.51 -2.38 -0.02 0.36 16 47 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 48 H 0.02 0.99 8.03 -2.39 -0.02 0.97 16 49 H 0.03 1.40 6.59 -2.39 -0.02 1.38 16 Total: -1.00 -78.39 394.71 1.93 -76.46 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: -0.65 Total: 24.73 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 6.01 Total: -2.13 kcal Atomic # 7 Polarization: -120.77 SS G_CDS: -5.42 Total: -126.19 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.04 Total: -22.32 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.44 kcal Total: -78.39 1.93 -76.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733415364.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.813 kcal (2) G-P(sol) polarization free energy of solvation -78.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds