Wall clock time and date at job start Wed Apr 1 2020 00:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 110.77796 * 2 1 4 4 N 1.46500 * 109.47424 * 56.76240 * 3 2 1 5 5 C 1.36938 * 120.00303 * 180.02562 * 4 3 2 6 6 H 1.08004 * 119.99798 * 359.97438 * 5 4 3 7 7 C 1.38806 * 119.99940 * 179.97438 * 5 4 3 8 8 N 1.31615 * 120.00336 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99790 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47213 * 90.00039 * 9 7 5 11 11 H 1.48499 * 109.47305 * 209.99945 * 9 7 5 12 12 H 1.48502 * 109.47075 * 330.00196 * 9 7 5 13 13 C 1.55157 * 110.71877 * 123.23575 * 2 1 3 14 14 C 1.55127 * 101.48484 * 82.69660 * 13 2 1 15 15 N 1.47428 * 104.72344 * 37.29500 * 14 13 2 16 16 C 1.34774 * 125.64809 * 155.81421 * 15 14 13 17 17 O 1.21284 * 119.99935 * 179.69307 * 16 15 14 18 18 C 1.50701 * 120.00362 * 359.69363 * 16 15 14 19 19 C 1.50694 * 109.47049 * 179.97438 * 18 16 15 20 20 C 1.34242 * 126.50507 * 264.68756 * 19 18 16 21 21 N 1.36830 * 109.93296 * 180.26494 * 20 19 18 22 22 H 0.96997 * 125.06625 * 180.02562 * 21 20 19 23 23 C 1.37691 * 109.87320 * 0.02562 * 21 20 19 24 24 C 1.39128 * 133.50831 * 179.97438 * 23 21 20 25 25 C 1.37752 * 119.77814 * 180.02562 * 24 23 21 26 26 C 1.38836 * 120.66720 * 359.97438 * 25 24 23 27 27 C 1.36624 * 120.52467 * 0.02562 * 26 25 24 28 28 C 1.39627 * 119.76669 * 0.02562 * 27 26 25 29 29 C 1.47021 * 108.70172 * 335.55137 * 15 14 13 30 30 H 1.09004 * 109.47176 * 183.24124 * 1 2 3 31 31 H 1.09002 * 109.47316 * 303.23745 * 1 2 3 32 32 H 1.08995 * 109.47130 * 63.24330 * 1 2 3 33 33 H 1.09006 * 109.47211 * 176.76078 * 3 2 1 34 34 H 1.09005 * 109.47150 * 296.76081 * 3 2 1 35 35 H 0.96999 * 119.99733 * 359.97438 * 4 3 2 36 36 H 0.97001 * 120.00029 * 180.02562 * 8 7 5 37 37 H 1.09001 * 111.00433 * 200.93321 * 13 2 1 38 38 H 1.09002 * 111.00790 * 324.74976 * 13 2 1 39 39 H 1.09001 * 110.50161 * 278.45042 * 14 13 2 40 40 H 1.09000 * 110.34207 * 156.05563 * 14 13 2 41 41 H 1.08995 * 109.46753 * 60.00016 * 18 16 15 42 42 H 1.08996 * 109.46780 * 299.99679 * 18 16 15 43 43 H 1.08002 * 125.03001 * 0.22732 * 20 19 18 44 44 H 1.08001 * 120.11202 * 0.02562 * 24 23 21 45 45 H 1.07995 * 119.66427 * 179.97438 * 25 24 23 46 46 H 1.07997 * 119.73077 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.11268 * 179.97438 * 27 26 25 48 48 H 1.09000 * 109.88346 * 120.70373 * 29 15 14 49 49 H 1.09000 * 109.88277 * 241.86972 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 7 1.5382 2.1557 1.1552 5 6 1.8872 3.4632 1.3642 6 1 2.5568 3.9598 0.6776 7 6 1.3802 4.1504 2.4585 8 7 0.5638 3.5455 3.2950 9 14 1.8569 5.9340 2.7440 10 1 0.8886 6.8220 2.0517 11 1 1.8405 6.2237 4.2003 12 1 3.2203 6.1740 2.2068 13 6 2.0789 -0.7954 1.2138 14 6 2.0075 -2.2524 0.6862 15 7 2.3716 -2.1532 -0.7389 16 6 2.8850 -3.1478 -1.4896 17 8 3.1431 -2.9539 -2.6587 18 6 3.1384 -4.5009 -0.8764 19 6 3.7093 -5.4263 -1.9198 20 6 3.0231 -6.2984 -2.6751 21 7 3.8784 -6.9699 -3.5058 22 1 3.6150 -7.6505 -4.1447 23 6 5.1686 -6.5355 -3.2996 24 6 6.3950 -6.8752 -3.8618 25 6 7.5424 -6.2454 -3.4324 26 6 7.4885 -5.2729 -2.4430 27 6 6.2948 -4.9239 -1.8773 28 6 5.1195 -5.5503 -2.2967 29 6 2.0760 -0.7912 -1.2072 30 1 -0.3634 -1.0261 0.0581 31 1 -0.3634 0.5633 0.8595 32 1 -0.3633 0.4626 -0.9176 33 1 3.1610 1.4062 0.0581 34 1 1.7690 1.9343 -0.9176 35 1 0.9365 1.7098 1.7717 36 1 0.2092 4.0259 4.0595 37 1 3.1061 -0.5073 1.4375 38 1 1.4399 -0.6656 2.0873 39 1 0.9974 -2.6480 0.7930 40 1 2.7208 -2.8830 1.2169 41 1 2.2008 -4.9111 -0.5013 42 1 3.8459 -4.4000 -0.0534 43 1 1.9544 -6.4484 -2.6328 44 1 6.4473 -7.6301 -4.6324 45 1 8.4935 -6.5108 -3.8698 46 1 8.3975 -4.7891 -2.1174 47 1 6.2606 -4.1668 -1.1078 48 1 2.9868 -0.3207 -1.5775 49 1 1.3263 -0.8256 -1.9977 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733442122.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:23 Heat of formation + Delta-G solvation = 33.753459 kcal Electronic energy + Delta-G solvation = -28926.266680 eV Core-core repulsion = 25046.651090 eV Total energy + Delta-G solvation = -3879.615590 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.47420 -40.03475 -37.97388 -37.03850 -34.78852 -33.29638 -32.59715 -30.57634 -30.13567 -29.45029 -29.29377 -27.69926 -26.33902 -25.13845 -23.03976 -22.96100 -22.40022 -21.93919 -20.17749 -19.03909 -18.61910 -17.89856 -17.25973 -16.70621 -16.64697 -16.03295 -15.60610 -15.29237 -14.65426 -14.48943 -14.28491 -14.09218 -13.94641 -13.89048 -13.85716 -13.26898 -13.12839 -12.75647 -12.72578 -12.44657 -12.40129 -12.14588 -12.05431 -11.82885 -11.64542 -11.54241 -11.45782 -11.00855 -10.98352 -10.82224 -10.55333 -10.31169 -10.22714 -9.97925 -9.89677 -9.67291 -9.54892 -8.87012 -8.51030 -8.36543 -7.82445 -6.91180 -5.76898 -3.04613 0.97485 1.48970 2.40396 2.75469 2.91469 3.19269 3.44142 3.49762 3.50989 3.79026 4.51034 4.52608 4.58768 4.64446 4.73786 4.76396 4.91618 4.98244 5.03011 5.12068 5.13378 5.31957 5.35892 5.36932 5.43621 5.50591 5.54636 5.60597 5.65782 5.72382 5.75765 5.93951 5.95258 6.04826 6.08838 6.13460 6.26701 6.31169 6.37443 6.44176 6.46111 6.49311 6.53000 6.60447 6.68090 6.78853 6.86913 6.99700 7.31872 7.64278 7.71290 8.30070 8.42615 9.54197 10.11393 10.46759 11.46096 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021856 B = 0.002026 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.777595 B =13814.481949 C =14521.630153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.078 4.078 3 C 0.168 3.832 4 N -0.728 5.728 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.116 4.116 14 C 0.097 3.903 15 N -0.617 5.617 16 C 0.525 3.475 17 O -0.535 6.535 18 C -0.060 4.060 19 C -0.150 4.150 20 C 0.062 3.938 21 N -0.595 5.595 22 H 0.415 0.585 23 C 0.095 3.905 24 C -0.133 4.133 25 C -0.101 4.101 26 C -0.148 4.148 27 C -0.066 4.066 28 C -0.089 4.089 29 C 0.120 3.880 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.021 0.979 34 H 0.021 0.979 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.168 0.832 44 H 0.117 0.883 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.068 0.932 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.389 -25.680 -10.148 28.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.079 4.079 3 C 0.040 3.960 4 N -0.373 5.373 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.738 3.262 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.154 4.154 14 C -0.026 4.026 15 N -0.352 5.352 16 C 0.313 3.687 17 O -0.411 6.411 18 C -0.100 4.100 19 C -0.158 4.158 20 C -0.064 4.064 21 N -0.198 5.198 22 H 0.251 0.749 23 C -0.012 4.012 24 C -0.153 4.153 25 C -0.120 4.120 26 C -0.167 4.167 27 C -0.085 4.085 28 C -0.094 4.094 29 C -0.003 4.003 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.219 0.781 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.186 0.814 44 H 0.135 0.865 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.137 0.863 48 H 0.086 0.914 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.576 -25.568 -10.923 28.571 hybrid contribution -0.200 0.655 0.110 0.693 sum 6.376 -24.914 -10.813 27.898 Atomic orbital electron populations 1.21760 0.93379 1.00691 1.03102 1.21791 0.96383 0.96171 0.93518 1.20597 0.95679 0.87999 0.91707 1.42342 1.56765 1.10757 1.27449 1.19229 1.22708 0.87922 1.06944 0.91245 1.24710 1.00137 0.98303 0.97851 1.69645 1.36274 1.36232 1.16171 0.86197 0.77960 0.85108 0.76975 1.21783 1.21822 1.20802 1.22860 1.02763 0.91838 0.97982 1.22491 1.00158 0.99070 0.80873 1.48573 1.63216 1.11775 1.11666 1.20322 0.76977 0.85207 0.86176 1.90712 1.51375 1.82614 1.16400 1.19905 1.02308 0.90856 0.96973 1.19558 0.91517 1.01676 1.03030 1.21518 0.95472 0.96031 0.93373 1.41647 1.05036 1.36911 1.36184 0.74867 1.18228 0.85609 0.98223 0.99121 1.19989 0.89754 1.03161 1.02432 1.20781 0.97207 0.96618 0.97440 1.20624 0.97653 0.99632 0.98797 1.20280 0.90870 0.98159 0.99173 1.18990 0.93142 0.98594 0.98651 1.21998 1.00348 0.81253 0.96689 0.93528 0.90838 0.92716 0.96073 0.96101 0.78064 0.93566 0.90268 0.89335 0.91314 0.90822 0.88373 0.88289 0.81432 0.86476 0.85920 0.86093 0.86313 0.91389 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.28 37.16 0.31 -1.69 16 2 C -0.08 -1.20 0.61 -152.67 -0.09 -1.30 16 3 C 0.17 3.31 5.08 -4.04 -0.02 3.29 16 4 N -0.73 -17.69 5.16 -59.91 -0.31 -18.00 16 5 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 6 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 9 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 13 C -0.12 -1.62 5.73 -24.46 -0.14 -1.76 16 14 C 0.10 1.06 6.38 -2.41 -0.02 1.04 16 15 N -0.62 -8.15 3.32 -170.38 -0.57 -8.72 16 16 C 0.52 7.26 7.84 -10.99 -0.09 7.17 16 17 O -0.53 -9.61 16.36 5.55 0.09 -9.52 16 18 C -0.06 -0.60 5.23 -29.04 -0.15 -0.75 16 19 C -0.15 -1.70 4.81 -102.71 -0.49 -2.19 16 20 C 0.06 0.57 11.73 -16.73 -0.20 0.38 16 21 N -0.60 -5.13 6.07 -10.65 -0.06 -5.20 16 22 H 0.41 2.17 8.96 -40.82 -0.37 1.81 16 23 C 0.09 1.04 7.28 -83.99 -0.61 0.43 16 24 C -0.13 -1.26 10.08 -39.43 -0.40 -1.66 16 25 C -0.10 -0.94 10.01 -39.54 -0.40 -1.33 16 26 C -0.15 -1.50 9.97 -39.94 -0.40 -1.90 16 27 C -0.07 -0.78 10.05 -39.65 -0.40 -1.18 16 28 C -0.09 -1.11 6.35 -105.14 -0.67 -1.77 16 29 C 0.12 1.78 6.04 -3.06 -0.02 1.76 16 30 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16 31 H 0.07 1.28 6.69 -51.93 -0.35 0.93 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.38 9.62 6.21 -40.82 -0.25 9.37 16 36 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.08 1.18 8.02 -51.93 -0.42 0.77 16 38 H 0.09 1.27 8.04 -51.93 -0.42 0.85 16 39 H 0.07 0.66 7.67 -51.93 -0.40 0.26 16 40 H 0.07 0.65 7.48 -51.93 -0.39 0.26 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 0.87 7.85 -51.93 -0.41 0.46 16 43 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 45 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 46 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 47 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 48 H 0.07 1.08 7.82 -51.93 -0.41 0.68 16 49 H 0.07 0.98 7.84 -51.93 -0.41 0.57 16 LS Contribution 398.77 15.07 6.01 6.01 Total: -1.00 -34.78 398.77 -10.71 -45.48 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.54 Total: 8.19 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -4.02 Total: -8.63 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.22 Total: -58.78 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.78 -10.71 -45.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733442122.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.238 kcal (2) G-P(sol) polarization free energy of solvation -34.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds