Wall clock time and date at job start Wed Apr 1 2020 00:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 110.77796 * 2 1 4 4 N 1.46500 * 109.47424 * 56.76240 * 3 2 1 5 5 C 1.36938 * 120.00303 * 180.02562 * 4 3 2 6 6 H 1.08004 * 119.99798 * 359.97438 * 5 4 3 7 7 C 1.38806 * 119.99940 * 179.97438 * 5 4 3 8 8 N 1.31615 * 120.00336 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99790 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47213 * 90.00039 * 9 7 5 11 11 H 1.48499 * 109.47305 * 209.99945 * 9 7 5 12 12 H 1.48502 * 109.47075 * 330.00196 * 9 7 5 13 13 C 1.55157 * 110.71877 * 123.23575 * 2 1 3 14 14 C 1.55127 * 101.48484 * 82.69660 * 13 2 1 15 15 N 1.47428 * 104.72344 * 37.29500 * 14 13 2 16 16 C 1.34774 * 125.64809 * 155.81421 * 15 14 13 17 17 O 1.21284 * 119.99935 * 179.69307 * 16 15 14 18 18 C 1.50701 * 120.00362 * 359.69363 * 16 15 14 19 19 C 1.50694 * 109.47049 * 179.97438 * 18 16 15 20 20 C 1.34242 * 126.50507 * 264.68756 * 19 18 16 21 21 N 1.36830 * 109.93296 * 180.26494 * 20 19 18 22 22 H 0.96997 * 125.06625 * 180.02562 * 21 20 19 23 23 C 1.37691 * 109.87320 * 0.02562 * 21 20 19 24 24 C 1.39128 * 133.50831 * 179.97438 * 23 21 20 25 25 C 1.37752 * 119.77814 * 180.02562 * 24 23 21 26 26 C 1.38836 * 120.66720 * 359.97438 * 25 24 23 27 27 C 1.36624 * 120.52467 * 0.02562 * 26 25 24 28 28 C 1.39627 * 119.76669 * 0.02562 * 27 26 25 29 29 C 1.47021 * 108.70172 * 335.55137 * 15 14 13 30 30 H 1.09004 * 109.47176 * 183.24124 * 1 2 3 31 31 H 1.09002 * 109.47316 * 303.23745 * 1 2 3 32 32 H 1.08995 * 109.47130 * 63.24330 * 1 2 3 33 33 H 1.09006 * 109.47211 * 176.76078 * 3 2 1 34 34 H 1.09005 * 109.47150 * 296.76081 * 3 2 1 35 35 H 0.96999 * 119.99733 * 359.97438 * 4 3 2 36 36 H 0.97001 * 120.00029 * 180.02562 * 8 7 5 37 37 H 1.09001 * 111.00433 * 200.93321 * 13 2 1 38 38 H 1.09002 * 111.00790 * 324.74976 * 13 2 1 39 39 H 1.09001 * 110.50161 * 278.45042 * 14 13 2 40 40 H 1.09000 * 110.34207 * 156.05563 * 14 13 2 41 41 H 1.08995 * 109.46753 * 60.00016 * 18 16 15 42 42 H 1.08996 * 109.46780 * 299.99679 * 18 16 15 43 43 H 1.08002 * 125.03001 * 0.22732 * 20 19 18 44 44 H 1.08001 * 120.11202 * 0.02562 * 24 23 21 45 45 H 1.07995 * 119.66427 * 179.97438 * 25 24 23 46 46 H 1.07997 * 119.73077 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.11268 * 179.97438 * 27 26 25 48 48 H 1.09000 * 109.88346 * 120.70373 * 29 15 14 49 49 H 1.09000 * 109.88277 * 241.86972 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 7 1.5382 2.1557 1.1552 5 6 1.8872 3.4632 1.3642 6 1 2.5568 3.9598 0.6776 7 6 1.3802 4.1504 2.4585 8 7 0.5638 3.5455 3.2950 9 14 1.8569 5.9340 2.7440 10 1 0.8886 6.8220 2.0517 11 1 1.8405 6.2237 4.2003 12 1 3.2203 6.1740 2.2068 13 6 2.0789 -0.7954 1.2138 14 6 2.0075 -2.2524 0.6862 15 7 2.3716 -2.1532 -0.7389 16 6 2.8850 -3.1478 -1.4896 17 8 3.1431 -2.9539 -2.6587 18 6 3.1384 -4.5009 -0.8764 19 6 3.7093 -5.4263 -1.9198 20 6 3.0231 -6.2984 -2.6751 21 7 3.8784 -6.9699 -3.5058 22 1 3.6150 -7.6505 -4.1447 23 6 5.1686 -6.5355 -3.2996 24 6 6.3950 -6.8752 -3.8618 25 6 7.5424 -6.2454 -3.4324 26 6 7.4885 -5.2729 -2.4430 27 6 6.2948 -4.9239 -1.8773 28 6 5.1195 -5.5503 -2.2967 29 6 2.0760 -0.7912 -1.2072 30 1 -0.3634 -1.0261 0.0581 31 1 -0.3634 0.5633 0.8595 32 1 -0.3633 0.4626 -0.9176 33 1 3.1610 1.4062 0.0581 34 1 1.7690 1.9343 -0.9176 35 1 0.9365 1.7098 1.7717 36 1 0.2092 4.0259 4.0595 37 1 3.1061 -0.5073 1.4375 38 1 1.4399 -0.6656 2.0873 39 1 0.9974 -2.6480 0.7930 40 1 2.7208 -2.8830 1.2169 41 1 2.2008 -4.9111 -0.5013 42 1 3.8459 -4.4000 -0.0534 43 1 1.9544 -6.4484 -2.6328 44 1 6.4473 -7.6301 -4.6324 45 1 8.4935 -6.5108 -3.8698 46 1 8.3975 -4.7891 -2.1174 47 1 6.2606 -4.1668 -1.1078 48 1 2.9868 -0.3207 -1.5775 49 1 1.3263 -0.8256 -1.9977 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733442122.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:22 Heat of formation + Delta-G solvation = 12.837687 kcal Electronic energy + Delta-G solvation = -28927.173656 eV Core-core repulsion = 25046.651090 eV Total energy + Delta-G solvation = -3880.522566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.18904 -41.14783 -39.18315 -37.75050 -36.45123 -34.41224 -33.89812 -32.13794 -31.12917 -30.45749 -30.16518 -28.61768 -27.71347 -26.66255 -24.42469 -23.88343 -23.72816 -22.65889 -21.06040 -20.24094 -19.65046 -19.15794 -18.63936 -17.87965 -17.44506 -17.05073 -16.50667 -16.32537 -16.26576 -15.63764 -15.47573 -15.25715 -15.09356 -14.98947 -14.79673 -14.67819 -14.32054 -14.03482 -13.64763 -13.57056 -13.49031 -13.26649 -12.99351 -12.94943 -12.87473 -12.75772 -12.64223 -12.54709 -12.27488 -12.13614 -12.07593 -11.69967 -11.59309 -11.48241 -11.40316 -10.94439 -10.91151 -10.44806 -9.60186 -9.10258 -8.96205 -8.54076 -7.93344 -5.20526 0.24261 0.73177 1.48636 1.49385 1.57810 1.62546 1.72994 2.19583 2.32003 2.57396 3.01856 3.38560 3.43285 3.65530 3.81642 3.85006 3.90251 3.98869 4.10136 4.23862 4.25811 4.31271 4.33715 4.39115 4.44325 4.45889 4.61007 4.66681 4.69860 4.75746 4.79264 4.85462 4.90186 4.93987 5.01519 5.04165 5.06331 5.13716 5.23763 5.25065 5.33221 5.37526 5.50501 5.52577 5.59015 5.72338 5.79646 5.85523 6.27544 6.29557 6.62208 6.76504 7.25834 7.37226 8.11701 8.38601 9.29790 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021856 B = 0.002026 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.777595 B =13814.481949 C =14521.630153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.070 4.070 3 C 0.167 3.833 4 N -0.734 5.734 5 C -0.245 4.245 6 H 0.069 0.931 7 C -0.071 4.071 8 N -0.964 5.964 9 Si 0.969 3.031 10 H -0.288 1.288 11 H -0.294 1.294 12 H -0.274 1.274 13 C -0.116 4.116 14 C 0.105 3.895 15 N -0.617 5.617 16 C 0.523 3.477 17 O -0.583 6.583 18 C -0.049 4.049 19 C -0.186 4.186 20 C 0.072 3.928 21 N -0.586 5.586 22 H 0.430 0.570 23 C 0.073 3.927 24 C -0.135 4.135 25 C -0.110 4.110 26 C -0.155 4.155 27 C -0.095 4.095 28 C -0.119 4.119 29 C 0.126 3.874 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.015 0.985 34 H 0.014 0.986 35 H 0.380 0.620 36 H 0.252 0.748 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.133 0.867 42 H 0.111 0.889 43 H 0.202 0.798 44 H 0.142 0.858 45 H 0.149 0.851 46 H 0.135 0.865 47 H 0.114 0.886 48 H 0.049 0.951 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.237 -27.804 -10.479 30.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.070 4.070 3 C 0.040 3.960 4 N -0.378 5.378 5 C -0.377 4.377 6 H 0.087 0.913 7 C -0.263 4.263 8 N -0.615 5.615 9 Si 0.799 3.201 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.199 1.199 13 C -0.154 4.154 14 C -0.017 4.017 15 N -0.350 5.350 16 C 0.314 3.686 17 O -0.463 6.463 18 C -0.089 4.089 19 C -0.193 4.193 20 C -0.055 4.055 21 N -0.190 5.190 22 H 0.270 0.730 23 C -0.034 4.034 24 C -0.155 4.155 25 C -0.129 4.129 26 C -0.174 4.174 27 C -0.114 4.114 28 C -0.124 4.124 29 C 0.003 3.997 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.033 0.967 34 H 0.032 0.968 35 H 0.214 0.786 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.121 0.879 41 H 0.150 0.850 42 H 0.129 0.871 43 H 0.218 0.782 44 H 0.160 0.840 45 H 0.167 0.833 46 H 0.153 0.847 47 H 0.132 0.868 48 H 0.068 0.932 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.434 -27.723 -11.270 30.610 hybrid contribution -0.106 1.295 0.126 1.306 sum 6.329 -26.427 -11.144 29.371 Atomic orbital electron populations 1.21674 0.92688 1.02058 1.01724 1.21614 0.96716 0.93727 0.94989 1.20680 0.95190 0.90380 0.89721 1.42450 1.56692 1.10174 1.28504 1.19573 1.22097 0.89315 1.06701 0.91288 1.25461 1.00714 1.02161 0.97996 1.69781 1.37521 1.37565 1.16612 0.85205 0.77908 0.80529 0.76491 1.21570 1.22001 1.19877 1.22807 1.01582 0.93856 0.97162 1.22614 1.02550 0.97219 0.79304 1.48639 1.62943 1.10851 1.12605 1.21080 0.75640 0.86305 0.85605 1.90687 1.53365 1.83543 1.18703 1.19927 1.04152 0.88152 0.96675 1.19830 0.91408 1.03289 1.04793 1.22074 0.96805 0.94688 0.91940 1.41694 1.04265 1.36889 1.36141 0.73046 1.18523 0.86880 0.98577 0.99399 1.20362 0.89329 1.03323 1.02529 1.21140 0.98440 0.96180 0.97139 1.20915 0.97763 0.99861 0.98881 1.20443 0.91741 0.99024 1.00155 1.19385 0.94000 0.99412 0.99586 1.21761 0.99396 0.82406 0.96162 0.90584 0.93307 0.93068 0.96749 0.96791 0.78619 0.93957 0.91751 0.89664 0.88757 0.87869 0.84959 0.87127 0.78167 0.83985 0.83340 0.84684 0.86772 0.93228 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.65 8.28 71.98 0.60 -3.05 16 2 C -0.07 -2.14 0.61 -50.99 -0.03 -2.17 16 3 C 0.17 6.74 5.08 86.38 0.44 7.18 16 4 N -0.73 -36.36 5.16 -343.45 -1.77 -38.13 16 5 C -0.24 -13.64 9.99 84.03 0.84 -12.80 16 6 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 7 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 8 N -0.96 -57.61 13.06 21.65 0.28 -57.32 16 9 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 10 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 13 C -0.12 -3.11 5.73 32.06 0.18 -2.92 16 14 C 0.10 1.98 6.38 86.93 0.55 2.54 16 15 N -0.62 -15.28 3.32 -811.35 -2.70 -17.97 16 16 C 0.52 13.78 7.84 87.66 0.69 14.47 16 17 O -0.58 -20.98 16.36 -3.04 -0.05 -21.03 16 18 C -0.05 -0.87 5.23 29.10 0.15 -0.72 16 19 C -0.19 -3.93 4.81 -18.63 -0.09 -4.02 16 20 C 0.07 1.16 11.73 83.00 0.97 2.13 16 21 N -0.59 -9.00 6.07 -187.60 -1.14 -10.14 16 22 H 0.43 3.53 8.96 -92.71 -0.83 2.70 16 23 C 0.07 1.54 7.28 39.03 0.28 1.82 16 24 C -0.13 -2.38 10.08 22.37 0.23 -2.15 16 25 C -0.11 -1.91 10.01 22.30 0.22 -1.68 16 26 C -0.16 -3.14 9.97 22.04 0.22 -2.92 16 27 C -0.09 -2.28 10.05 22.23 0.22 -2.06 16 28 C -0.12 -2.93 6.35 -20.20 -0.13 -3.05 16 29 C 0.13 3.71 6.04 86.73 0.52 4.23 16 30 H 0.08 1.77 7.39 -2.38 -0.02 1.76 16 31 H 0.05 1.69 6.69 -2.39 -0.02 1.67 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.01 0.61 8.10 -2.38 -0.02 0.59 16 34 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.38 19.41 6.21 -92.71 -0.58 18.84 16 36 H 0.25 14.59 8.31 -92.71 -0.77 13.81 16 37 H 0.06 1.91 8.02 -2.39 -0.02 1.89 16 38 H 0.08 2.36 8.04 -2.39 -0.02 2.34 16 39 H 0.09 1.40 7.67 -2.39 -0.02 1.38 16 40 H 0.10 1.42 7.48 -2.39 -0.02 1.40 16 41 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.11 1.68 7.85 -2.39 -0.02 1.67 16 43 H 0.20 1.68 8.06 -2.91 -0.02 1.65 16 44 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 45 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 46 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 47 H 0.11 2.63 8.06 -2.91 -0.02 2.61 16 48 H 0.05 1.63 7.82 -2.39 -0.02 1.61 16 49 H 0.06 1.91 7.84 -2.39 -0.02 1.89 16 Total: -1.00 -77.22 398.77 2.56 -74.66 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: -0.44 Total: 30.57 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 6.34 Total: -8.73 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -5.32 Total: -123.57 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.05 Total: -21.03 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -77.22 2.56 -74.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733442122.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.501 kcal (2) G-P(sol) polarization free energy of solvation -77.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds