Wall clock time and date at job start Wed Apr 1 2020 01:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46953 * 2 1 4 4 C 1.52997 * 109.47516 * 119.99875 * 2 1 3 5 5 H 1.08999 * 109.46983 * 300.00443 * 4 2 1 6 6 C 1.52993 * 109.47602 * 180.02562 * 4 2 1 7 7 N 1.46498 * 109.47559 * 185.00002 * 6 4 2 8 8 C 1.34770 * 119.99990 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00347 * 0.02562 * 8 7 6 10 10 C 1.50707 * 119.99790 * 180.02562 * 8 7 6 11 11 C 1.50700 * 109.47190 * 180.02562 * 10 8 7 12 12 C 1.36108 * 120.12656 * 265.00282 * 11 10 8 13 13 C 1.39317 * 121.06291 * 179.97438 * 12 11 10 14 14 C 1.36177 * 120.87353 * 0.02562 * 13 12 11 15 15 C 1.40386 * 119.61376 * 0.02562 * 14 13 12 16 16 C 1.40769 * 121.39008 * 179.97438 * 15 14 13 17 17 C 1.36583 * 118.15014 * 179.08857 * 16 15 14 18 18 C 1.39336 * 119.93976 * 0.88738 * 17 16 15 19 19 N 1.31085 * 121.74958 * 359.39192 * 18 17 16 20 20 C 1.33688 * 121.31918 * 0.02562 * 19 18 17 21 21 N 1.46506 * 109.46691 * 60.00182 * 4 2 1 22 22 C 1.36939 * 120.00073 * 274.72524 * 21 4 2 23 23 H 1.08004 * 119.99859 * 0.02562 * 22 21 4 24 24 C 1.38805 * 119.99849 * 180.02562 * 22 21 4 25 25 N 1.31622 * 120.00455 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00168 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47227 * 89.99498 * 26 24 22 28 28 H 1.48496 * 109.47434 * 209.99930 * 26 24 22 29 29 H 1.48507 * 109.46769 * 330.00032 * 26 24 22 30 30 H 1.08999 * 109.47357 * 299.99910 * 1 2 3 31 31 H 1.08996 * 109.47049 * 60.00068 * 1 2 3 32 32 H 1.09002 * 109.46430 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47271 * 240.00866 * 2 1 3 34 34 H 1.08998 * 109.47401 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.46989 * 300.00360 * 3 2 1 36 36 H 1.08999 * 109.47016 * 59.99881 * 3 2 1 37 37 H 1.09002 * 109.47378 * 305.00625 * 6 4 2 38 38 H 1.09004 * 109.46895 * 64.99844 * 6 4 2 39 39 H 0.96997 * 120.00009 * 0.02562 * 7 6 4 40 40 H 1.08997 * 109.47232 * 299.99988 * 10 8 7 41 41 H 1.08995 * 109.46819 * 60.00788 * 10 8 7 42 42 H 1.07997 * 119.47271 * 0.02562 * 12 11 10 43 43 H 1.08003 * 119.56309 * 180.02562 * 13 12 11 44 44 H 1.07994 * 120.19174 * 179.97438 * 14 13 12 45 45 H 1.07999 * 120.92404 * 0.02562 * 16 15 14 46 46 H 1.08004 * 120.02960 * 180.27864 * 17 16 15 47 47 H 1.07994 * 119.12859 * 179.40886 * 18 17 16 48 48 H 0.97005 * 119.99811 * 95.00317 * 21 4 2 49 49 H 0.97000 * 120.00679 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7206 1.2495 7 7 4.0585 -1.5128 2.3809 8 6 5.3835 -1.6540 2.5826 9 8 6.1716 -1.1248 1.8277 10 6 5.8860 -2.4694 3.7461 11 6 7.3930 -2.4687 3.7465 12 6 8.0767 -3.4876 3.1574 13 6 9.4697 -3.5064 3.1459 14 6 10.1869 -2.5042 3.7253 15 6 9.5148 -1.4378 4.3432 16 6 10.2187 -0.3827 4.9538 17 6 9.4982 0.6307 5.5188 18 6 8.1056 0.5906 5.4960 19 7 7.4532 -0.3965 4.9318 20 6 8.0978 -1.4134 4.3509 21 7 1.5518 -2.1025 1.2491 22 6 0.3125 -2.3906 1.7555 23 1 -0.3051 -1.5995 2.1545 24 6 -0.1499 -3.6994 1.7559 25 7 0.6025 -4.6634 1.2692 26 14 -1.8407 -4.0924 2.4460 27 1 -2.8518 -3.9980 1.3624 28 1 -1.8400 -5.4686 3.0038 29 1 -2.1744 -3.1229 3.5203 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8901 34 1 3.1300 1.4427 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.9338 -1.1546 0.3181 38 1 3.9330 0.3033 1.3393 39 1 3.4283 -1.9363 2.9845 40 1 5.5226 -2.0355 4.6777 41 1 5.5229 -3.4931 3.6560 42 1 7.5307 -4.2940 2.6907 43 1 9.9876 -4.3267 2.6712 44 1 11.2664 -2.5302 3.7103 45 1 11.2986 -0.3673 4.9618 46 1 10.0074 1.4576 5.9915 47 1 7.5489 1.3941 5.9552 48 1 2.1080 -2.8135 0.8941 49 1 0.2796 -5.5781 1.2698 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753835582.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:49 Heat of formation + Delta-G solvation = 15.178530 kcal Electronic energy + Delta-G solvation = -29240.500878 eV Core-core repulsion = 25360.079819 eV Total energy + Delta-G solvation = -3880.421059 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.00658 -39.21353 -37.40297 -36.97154 -34.14916 -33.68333 -33.10356 -31.45843 -30.62934 -30.35713 -28.53971 -27.01988 -26.00724 -24.31449 -23.69987 -23.64132 -22.06111 -21.13454 -19.94468 -19.16683 -18.37008 -17.37122 -17.04172 -16.88996 -16.45703 -15.56688 -15.27526 -14.95246 -14.60735 -14.41216 -14.23958 -14.00336 -13.93173 -13.49295 -13.41723 -13.31280 -13.14393 -12.94055 -12.72711 -12.26559 -12.00566 -11.79538 -11.77735 -11.64536 -11.59960 -11.28458 -10.99270 -10.92240 -10.82405 -10.60420 -10.57634 -10.26787 -10.09205 -9.92251 -9.55549 -9.53425 -9.42534 -8.90728 -8.84433 -8.48307 -8.23160 -7.01410 -5.81093 -3.09957 0.29542 0.75109 1.89186 2.84416 3.12533 3.39933 3.46227 3.47326 3.70095 4.08482 4.24492 4.40066 4.54805 4.59502 4.69389 4.76810 4.95660 5.04845 5.22681 5.24254 5.35414 5.37769 5.40359 5.46518 5.57771 5.63817 5.66468 5.73584 5.79892 5.85682 5.93527 5.96380 6.01033 6.06008 6.22070 6.28317 6.29674 6.38004 6.40667 6.43120 6.50215 6.57665 6.66558 6.72726 6.78459 7.03175 7.11072 7.31199 7.67625 7.86036 8.07340 8.36408 8.72660 9.48399 10.03648 10.39868 11.40766 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.002670 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.552527 B =10482.698940 C =11483.816056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.170 3.830 5 H 0.053 0.947 6 C 0.116 3.884 7 N -0.713 5.713 8 C 0.521 3.479 9 O -0.551 6.551 10 C -0.100 4.100 11 C -0.028 4.028 12 C -0.096 4.096 13 C -0.107 4.107 14 C -0.106 4.106 15 C -0.102 4.102 16 C -0.060 4.060 17 C -0.179 4.179 18 C 0.126 3.874 19 N -0.464 5.464 20 C 0.142 3.858 21 N -0.721 5.721 22 C -0.235 4.235 23 H 0.073 0.927 24 C -0.011 4.011 25 N -0.930 5.930 26 Si 0.902 3.098 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.282 1.282 30 H 0.040 0.960 31 H 0.031 0.969 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.410 0.590 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.157 0.843 48 H 0.385 0.615 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.237 7.546 7.343 21.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.060 3.940 5 H 0.071 0.929 6 C -0.008 4.008 7 N -0.365 5.365 8 C 0.307 3.693 9 O -0.429 6.429 10 C -0.140 4.140 11 C -0.030 4.030 12 C -0.115 4.115 13 C -0.125 4.125 14 C -0.125 4.125 15 C -0.104 4.104 16 C -0.086 4.086 17 C -0.199 4.199 18 C -0.046 4.046 19 N -0.171 5.171 20 C 0.020 3.980 21 N -0.362 5.362 22 C -0.366 4.366 23 H 0.090 0.910 24 C -0.208 4.208 25 N -0.578 5.578 26 Si 0.733 3.267 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.246 0.754 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.145 0.855 45 H 0.154 0.846 46 H 0.152 0.848 47 H 0.174 0.826 48 H 0.219 0.781 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.666 7.800 6.831 20.484 hybrid contribution -0.187 -0.608 0.388 0.745 sum 17.479 7.191 7.219 20.233 Atomic orbital electron populations 1.21815 0.94978 1.03855 0.98971 1.21724 0.96863 0.94401 1.00095 1.21940 1.00501 0.97355 1.00872 1.20539 0.89452 0.88119 0.95905 0.92904 1.21680 0.95470 0.94800 0.88895 1.45939 1.06598 1.52992 1.30960 1.20227 0.82455 0.80898 0.85710 1.90660 1.55574 1.48994 1.47718 1.20571 0.91732 1.02091 0.99599 1.19007 0.94554 0.92771 0.96625 1.20838 0.94354 0.98555 0.97786 1.20886 0.93981 0.98727 0.98937 1.20915 0.99649 0.93579 0.98343 1.18795 0.94055 0.96814 1.00721 1.21422 1.00154 0.92489 0.94579 1.21858 0.95748 1.00024 1.02224 1.22946 0.91776 0.95763 0.94160 1.67997 1.39957 1.01169 1.07966 1.18627 0.89522 0.93360 0.96458 1.42458 1.18206 1.01901 1.73666 1.19200 0.92957 0.92354 1.32059 0.90955 1.24718 0.98275 0.95897 1.01869 1.69660 1.36888 0.99877 1.51367 0.86272 0.84457 0.77357 0.78592 1.21812 1.21892 1.20783 0.94063 0.95032 0.89532 0.91952 0.93067 0.93611 0.93205 0.92172 0.91857 0.75427 0.87220 0.87807 0.85093 0.85446 0.85463 0.84648 0.84760 0.82594 0.78106 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.28 37.16 0.31 -2.22 16 2 C -0.11 -1.90 2.69 -90.62 -0.24 -2.14 16 3 C -0.15 -2.17 8.84 37.16 0.33 -1.84 16 4 C 0.17 3.18 2.18 -67.93 -0.15 3.04 16 5 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 6 C 0.12 2.06 4.73 -4.05 -0.02 2.04 16 7 N -0.71 -12.34 5.39 -60.30 -0.32 -12.66 16 8 C 0.52 9.11 7.82 -10.98 -0.09 9.03 16 9 O -0.55 -11.38 16.03 5.56 0.09 -11.30 16 10 C -0.10 -1.43 5.56 -29.03 -0.16 -1.59 16 11 C -0.03 -0.41 4.38 -104.51 -0.46 -0.87 16 12 C -0.10 -1.19 9.57 -39.95 -0.38 -1.58 16 13 C -0.11 -1.13 9.95 -39.92 -0.40 -1.53 16 14 C -0.11 -1.10 9.78 -39.51 -0.39 -1.49 16 15 C -0.10 -1.25 5.74 -106.80 -0.61 -1.86 16 16 C -0.06 -0.58 9.90 -39.22 -0.39 -0.97 16 17 C -0.18 -1.61 10.03 -39.77 -0.40 -2.01 16 18 C 0.13 1.40 11.15 -17.46 -0.19 1.20 16 19 N -0.46 -6.69 9.51 -10.97 -0.10 -6.79 16 20 C 0.14 2.07 6.58 -84.85 -0.56 1.51 16 21 N -0.72 -16.36 4.44 -53.43 -0.24 -16.59 16 22 C -0.23 -5.91 7.58 -15.06 -0.11 -6.02 16 23 H 0.07 1.79 7.42 -52.48 -0.39 1.40 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -26.52 13.06 55.49 0.72 -25.79 16 26 Si 0.90 21.41 29.55 -169.99 -5.02 16.39 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 1.86 6.03 -51.93 -0.31 1.54 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.72 6.54 -51.93 -0.34 0.38 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.06 1.09 6.71 -51.93 -0.35 0.74 16 39 H 0.41 7.07 8.14 -40.82 -0.33 6.73 16 40 H 0.11 1.49 7.72 -51.93 -0.40 1.09 16 41 H 0.10 1.30 8.04 -51.93 -0.42 0.88 16 42 H 0.13 1.44 8.04 -52.49 -0.42 1.02 16 43 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 44 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 46 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 47 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 48 H 0.38 9.58 7.80 -40.82 -0.32 9.26 16 49 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 401.51 15.07 6.05 6.05 Total: -1.00 -32.04 401.51 -10.32 -42.36 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -7.49 Total: 16.03 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -4.01 Total: -7.70 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: 0.06 Total: -61.84 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.04 -10.32 -42.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753835582.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.539 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds