Wall clock time and date at job start Wed Apr 1 2020 00:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 110.36868 * 2 1 4 4 C 1.34777 * 119.99693 * 299.27191 * 3 2 1 5 5 O 1.21279 * 120.00236 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99682 * 180.02562 * 4 3 2 7 7 F 1.39903 * 110.01360 * 58.60973 * 6 4 3 8 8 C 1.54263 * 110.03224 * 297.16979 * 6 4 3 9 9 C 1.54889 * 104.19498 * 217.10582 * 8 6 4 10 10 C 1.54895 * 102.74733 * 37.94202 * 9 8 6 11 11 C 1.53873 * 110.02819 * 180.02562 * 6 4 3 12 12 C 1.54263 * 110.32347 * 237.81814 * 2 1 3 13 13 C 1.54370 * 105.14940 * 241.15837 * 12 2 1 14 14 N 1.48564 * 104.59594 * 336.09228 * 13 12 2 15 15 C 1.46902 * 111.00131 * 159.04296 * 14 13 12 16 16 C 1.50700 * 109.47066 * 183.52593 * 15 14 13 17 17 O 1.21286 * 119.99997 * 353.96234 * 16 15 14 18 18 N 1.34777 * 119.99519 * 173.96139 * 16 15 14 19 19 C 1.37105 * 119.99376 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99806 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99556 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99695 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00406 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46988 * 90.00005 * 23 21 19 25 25 H 1.48492 * 109.47308 * 210.00377 * 23 21 19 26 26 H 1.48497 * 109.46753 * 330.00360 * 23 21 19 27 27 C 1.48558 * 104.21938 * 39.48852 * 14 13 12 28 28 H 1.09003 * 109.47308 * 180.72968 * 1 2 3 29 29 H 1.09000 * 109.46932 * 300.72629 * 1 2 3 30 30 H 1.08997 * 109.47130 * 60.72489 * 1 2 3 31 31 H 0.97000 * 120.00013 * 119.27328 * 3 2 1 32 32 H 1.09004 * 110.48632 * 335.78488 * 8 6 4 33 33 H 1.08993 * 110.48867 * 98.42699 * 8 6 4 34 34 H 1.09001 * 110.75538 * 279.62623 * 9 8 6 35 35 H 1.08993 * 110.75984 * 156.25676 * 9 8 6 36 36 H 1.09005 * 110.48319 * 203.38135 * 10 9 8 37 37 H 1.09000 * 110.59847 * 80.79566 * 10 9 8 38 38 H 1.09000 * 110.03048 * 238.56963 * 11 6 4 39 39 H 1.08994 * 110.03777 * 359.97438 * 11 6 4 40 40 H 1.08995 * 110.32485 * 122.20424 * 12 2 1 41 41 H 1.09004 * 110.31901 * 0.10410 * 12 2 1 42 42 H 1.09005 * 110.42013 * 94.87369 * 13 12 2 43 43 H 1.09005 * 110.41195 * 217.19566 * 13 12 2 44 44 H 1.09000 * 109.47026 * 303.53026 * 15 14 13 45 45 H 1.08999 * 109.46806 * 63.52642 * 15 14 13 46 46 H 0.96995 * 120.00460 * 0.02562 * 18 16 15 47 47 H 0.96999 * 119.99480 * 179.97438 * 22 21 19 48 48 H 1.08995 * 110.41486 * 79.29599 * 27 14 13 49 49 H 1.09006 * 110.41060 * 201.62420 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0399 1.3734 0.0000 4 6 1.7394 2.2038 -1.0182 5 8 1.0465 1.8142 -1.9342 6 6 2.2644 3.6164 -1.0185 7 9 3.6626 3.6076 -0.9703 8 6 1.6979 4.3909 0.1893 9 6 1.4551 5.8202 -0.3560 10 6 0.9440 5.5551 -1.7939 11 6 1.7846 4.3567 -2.2792 12 6 2.0658 -0.7705 -1.2243 13 6 2.8800 -1.9437 -0.6381 14 7 3.2708 -1.4863 0.7203 15 6 3.6080 -2.6265 1.5830 16 6 3.9146 -2.1313 2.9729 17 8 3.9652 -0.9400 3.1949 18 7 4.1324 -3.0124 3.9693 19 6 4.4108 -2.5619 5.2339 20 1 4.4559 -1.5011 5.4315 21 6 4.6360 -3.4702 6.2610 22 7 4.9033 -3.0384 7.4731 23 14 4.5587 -5.3050 5.9191 24 1 5.9055 -5.7927 5.5274 25 1 4.1103 -6.0180 7.1420 26 1 3.5987 -5.5628 4.8158 27 6 2.0689 -0.7738 1.2253 28 1 -0.3634 -1.0276 0.0131 29 1 -0.3633 0.5251 0.8834 30 1 -0.3633 0.5025 -0.8964 31 1 2.5938 1.6851 0.7328 32 1 0.7606 3.9454 0.5226 33 1 2.4224 4.4112 1.0034 34 1 2.3845 6.3894 -0.3751 35 1 0.6975 6.3354 0.2344 36 1 1.1184 6.4250 -2.4272 37 1 -0.1153 5.2984 -1.7832 38 1 2.6410 4.7099 -2.8535 39 1 1.1724 3.6942 -2.8910 40 1 2.7081 -0.1268 -1.8253 41 1 1.2387 -1.1470 -1.8262 42 1 2.2633 -2.8403 -0.5745 43 1 3.7644 -2.1340 -1.2461 44 1 2.7644 -3.3157 1.6206 45 1 4.4801 -3.1414 1.1801 46 1 4.0923 -3.9651 3.7917 47 1 5.0601 -3.6725 8.1902 48 1 1.3253 -1.4872 1.5804 49 1 2.3435 -0.0833 2.0228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754675061.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:50 Heat of formation + Delta-G solvation = -112.175484 kcal Electronic energy + Delta-G solvation = -31070.633896 eV Core-core repulsion = 26753.921128 eV Total energy + Delta-G solvation = -4316.712769 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -48.01753 -40.58697 -39.11304 -37.93254 -36.94915 -34.72093 -33.94093 -31.90158 -31.62456 -29.75938 -29.15254 -28.67429 -27.59360 -25.56288 -23.86731 -22.88797 -21.39133 -21.25646 -20.11181 -19.46258 -19.38608 -18.29114 -18.13345 -16.79059 -16.34463 -15.74067 -15.68030 -15.40820 -15.22452 -15.06067 -14.77655 -14.55906 -14.42247 -13.88108 -13.66412 -13.48467 -13.46141 -13.18389 -13.04273 -12.56942 -12.53225 -12.31457 -12.14535 -12.05705 -11.96067 -11.85582 -11.61251 -11.51277 -11.44612 -11.34585 -11.10736 -11.05780 -10.90240 -10.88904 -10.80764 -10.62842 -10.01436 -9.66937 -9.58917 -9.17569 -8.62872 -8.24383 -8.15458 -6.34971 -3.86485 2.31625 2.88960 2.99251 3.04144 3.12454 3.68731 3.90117 3.96266 4.01326 4.07023 4.25669 4.36254 4.50060 4.55909 4.83995 4.87337 4.93554 5.03649 5.05331 5.14304 5.16114 5.19761 5.24794 5.34284 5.47554 5.53939 5.54488 5.58219 5.62276 5.68518 5.68952 5.72081 5.78281 5.81546 5.88910 5.90244 5.92162 5.96740 6.04653 6.13117 6.27917 6.50878 6.95817 7.04576 7.38994 7.54253 7.99557 8.09899 8.55718 8.90859 9.38212 9.78100 10.78013 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.018098 B = 0.002564 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.720056 B =10918.855749 C =11790.602865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.169 3.831 3 N -0.697 5.697 4 C 0.506 3.494 5 O -0.526 6.526 6 C 0.101 3.899 7 F -0.190 7.190 8 C -0.144 4.144 9 C -0.123 4.123 10 C -0.122 4.122 11 C -0.143 4.143 12 C -0.118 4.118 13 C 0.028 3.972 14 N -0.484 5.484 15 C 0.031 3.969 16 C 0.451 3.549 17 O -0.562 6.562 18 N -0.590 5.590 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.880 5.880 23 Si 0.879 3.121 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.270 1.270 27 C 0.034 3.966 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.410 0.590 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.044 0.956 43 H 0.082 0.918 44 H 0.050 0.950 45 H 0.094 0.906 46 H 0.370 0.630 47 H 0.274 0.726 48 H 0.054 0.946 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.401 9.483 -18.698 22.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.082 3.918 3 N -0.348 5.348 4 C 0.290 3.710 5 O -0.403 6.403 6 C 0.079 3.921 7 F -0.170 7.170 8 C -0.182 4.182 9 C -0.161 4.161 10 C -0.160 4.160 11 C -0.180 4.180 12 C -0.157 4.157 13 C -0.100 4.100 14 N -0.208 5.208 15 C -0.101 4.101 16 C 0.237 3.763 17 O -0.444 6.444 18 N -0.229 5.229 19 C -0.433 4.433 20 H 0.138 0.862 21 C -0.161 4.161 22 N -0.520 5.520 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.094 4.094 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.246 0.754 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.062 0.938 43 H 0.100 0.900 44 H 0.068 0.932 45 H 0.112 0.888 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.073 0.927 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.282 10.270 -18.949 23.467 hybrid contribution -0.160 -2.141 0.437 2.191 sum -9.441 8.129 -18.512 22.314 Atomic orbital electron populations 1.22185 0.93512 1.02562 1.03288 1.21162 0.93633 0.81027 0.95942 1.46146 1.52239 1.12033 1.24350 1.20617 0.81088 0.86926 0.82400 1.90645 1.38308 1.76005 1.35310 1.21826 0.76780 0.93943 0.99549 1.92941 1.29084 1.97393 1.97586 1.23013 1.02714 0.96201 0.96307 1.22521 1.01819 0.95693 0.96052 1.22346 0.99800 0.97499 0.96320 1.22733 1.01808 0.97710 0.95794 1.22632 0.99598 0.96634 0.96795 1.23225 0.99024 0.96427 0.91368 1.65195 1.33028 1.21619 1.00927 1.22132 1.01413 0.92735 0.93821 1.19590 0.84296 0.87097 0.85306 1.90515 1.55132 1.15617 1.83113 1.42217 1.64219 1.07091 1.09371 1.19418 1.44936 0.96679 0.82303 0.86244 1.25042 0.97482 0.98506 0.95108 1.69622 1.46861 1.35036 1.00503 0.86676 0.78852 0.85354 0.78532 1.19565 1.20168 1.19560 1.23533 0.91093 0.98377 0.96364 0.91658 0.92285 0.90407 0.75426 0.89429 0.89032 0.90712 0.90558 0.90851 0.91020 0.89891 0.87901 0.90603 0.90550 0.93812 0.89961 0.93226 0.88778 0.79702 0.91583 0.92746 0.87100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 8.17 37.16 0.30 -1.50 16 2 C 0.17 2.15 1.01 -130.31 -0.13 2.02 16 3 N -0.70 -8.78 5.05 -46.21 -0.23 -9.02 16 4 C 0.51 6.34 5.90 -10.98 -0.06 6.28 16 5 O -0.53 -7.47 12.51 5.56 0.07 -7.40 16 6 C 0.10 1.09 1.48 -90.65 -0.13 0.95 16 7 F -0.19 -2.42 16.79 2.25 0.04 -2.38 16 8 C -0.14 -1.26 6.10 -25.07 -0.15 -1.42 16 9 C -0.12 -0.89 6.91 -24.74 -0.17 -1.06 16 10 C -0.12 -0.89 6.83 -25.10 -0.17 -1.06 16 11 C -0.14 -1.34 6.25 -25.64 -0.16 -1.50 16 12 C -0.12 -1.47 5.48 -25.35 -0.14 -1.61 16 13 C 0.03 0.35 6.49 -2.19 -0.01 0.33 16 14 N -0.48 -7.58 5.19 -231.25 -1.20 -8.78 16 15 C 0.03 0.51 5.39 -4.97 -0.03 0.48 16 16 C 0.45 9.91 7.43 -10.99 -0.08 9.82 16 17 O -0.56 -14.26 14.00 5.55 0.08 -14.18 16 18 N -0.59 -13.71 5.09 -10.96 -0.06 -13.76 16 19 C -0.30 -8.43 10.16 -14.93 -0.15 -8.58 16 20 H 0.12 3.77 7.39 -52.49 -0.39 3.39 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.37 13.96 55.50 0.77 -24.60 16 23 Si 0.88 19.09 27.74 -169.99 -4.71 14.37 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 26 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 27 C 0.03 0.52 4.79 -2.06 -0.01 0.51 16 28 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.96 6.32 -51.93 -0.33 0.63 16 31 H 0.41 5.19 8.27 -40.82 -0.34 4.85 16 32 H 0.09 0.74 7.85 -51.93 -0.41 0.33 16 33 H 0.09 0.79 8.11 -51.93 -0.42 0.37 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.74 8.02 -51.93 -0.42 0.33 16 39 H 0.10 1.08 6.39 -51.93 -0.33 0.75 16 40 H 0.08 1.05 7.31 -51.93 -0.38 0.67 16 41 H 0.08 0.87 7.71 -51.93 -0.40 0.47 16 42 H 0.04 0.49 7.92 -51.93 -0.41 0.08 16 43 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.05 0.71 7.98 -51.93 -0.41 0.30 16 45 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 47 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 48 H 0.05 0.79 7.67 -51.93 -0.40 0.40 16 49 H 0.11 1.96 6.15 -51.93 -0.32 1.64 16 LS Contribution 385.20 15.07 5.80 5.80 Total: -1.00 -32.10 385.20 -8.38 -40.48 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -7.74 Total: 14.75 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -1.20 Total: 4.71 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.71 Total: -56.15 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: 0.15 Total: -21.58 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.37 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.10 -8.38 -40.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754675061.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.697 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds