Wall clock time and date at job start Wed Apr 1 2020 00:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 110.36868 * 2 1 4 4 C 1.34777 * 119.99693 * 299.27191 * 3 2 1 5 5 O 1.21279 * 120.00236 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99682 * 180.02562 * 4 3 2 7 7 F 1.39903 * 110.01360 * 58.60973 * 6 4 3 8 8 C 1.54263 * 110.03224 * 297.16979 * 6 4 3 9 9 C 1.54889 * 104.19498 * 217.10582 * 8 6 4 10 10 C 1.54895 * 102.74733 * 37.94202 * 9 8 6 11 11 C 1.53873 * 110.02819 * 180.02562 * 6 4 3 12 12 C 1.54263 * 110.32347 * 237.81814 * 2 1 3 13 13 C 1.54370 * 105.14940 * 241.15837 * 12 2 1 14 14 N 1.48564 * 104.59594 * 336.09228 * 13 12 2 15 15 C 1.46902 * 111.00131 * 159.04296 * 14 13 12 16 16 C 1.50700 * 109.47066 * 183.52593 * 15 14 13 17 17 O 1.21286 * 119.99997 * 353.96234 * 16 15 14 18 18 N 1.34777 * 119.99519 * 173.96139 * 16 15 14 19 19 C 1.37105 * 119.99376 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99806 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99556 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99695 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00406 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46988 * 90.00005 * 23 21 19 25 25 H 1.48492 * 109.47308 * 210.00377 * 23 21 19 26 26 H 1.48497 * 109.46753 * 330.00360 * 23 21 19 27 27 C 1.48558 * 104.21938 * 39.48852 * 14 13 12 28 28 H 1.09003 * 109.47308 * 180.72968 * 1 2 3 29 29 H 1.09000 * 109.46932 * 300.72629 * 1 2 3 30 30 H 1.08997 * 109.47130 * 60.72489 * 1 2 3 31 31 H 0.97000 * 120.00013 * 119.27328 * 3 2 1 32 32 H 1.09004 * 110.48632 * 335.78488 * 8 6 4 33 33 H 1.08993 * 110.48867 * 98.42699 * 8 6 4 34 34 H 1.09001 * 110.75538 * 279.62623 * 9 8 6 35 35 H 1.08993 * 110.75984 * 156.25676 * 9 8 6 36 36 H 1.09005 * 110.48319 * 203.38135 * 10 9 8 37 37 H 1.09000 * 110.59847 * 80.79566 * 10 9 8 38 38 H 1.09000 * 110.03048 * 238.56963 * 11 6 4 39 39 H 1.08994 * 110.03777 * 359.97438 * 11 6 4 40 40 H 1.08995 * 110.32485 * 122.20424 * 12 2 1 41 41 H 1.09004 * 110.31901 * 0.10410 * 12 2 1 42 42 H 1.09005 * 110.42013 * 94.87369 * 13 12 2 43 43 H 1.09005 * 110.41195 * 217.19566 * 13 12 2 44 44 H 1.09000 * 109.47026 * 303.53026 * 15 14 13 45 45 H 1.08999 * 109.46806 * 63.52642 * 15 14 13 46 46 H 0.96995 * 120.00460 * 0.02562 * 18 16 15 47 47 H 0.96999 * 119.99480 * 179.97438 * 22 21 19 48 48 H 1.08995 * 110.41486 * 79.29599 * 27 14 13 49 49 H 1.09006 * 110.41060 * 201.62420 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0399 1.3734 0.0000 4 6 1.7394 2.2038 -1.0182 5 8 1.0465 1.8142 -1.9342 6 6 2.2644 3.6164 -1.0185 7 9 3.6626 3.6076 -0.9703 8 6 1.6979 4.3909 0.1893 9 6 1.4551 5.8202 -0.3560 10 6 0.9440 5.5551 -1.7939 11 6 1.7846 4.3567 -2.2792 12 6 2.0658 -0.7705 -1.2243 13 6 2.8800 -1.9437 -0.6381 14 7 3.2708 -1.4863 0.7203 15 6 3.6080 -2.6265 1.5830 16 6 3.9146 -2.1313 2.9729 17 8 3.9652 -0.9400 3.1949 18 7 4.1324 -3.0124 3.9693 19 6 4.4108 -2.5619 5.2339 20 1 4.4559 -1.5011 5.4315 21 6 4.6360 -3.4702 6.2610 22 7 4.9033 -3.0384 7.4731 23 14 4.5587 -5.3050 5.9191 24 1 5.9055 -5.7927 5.5274 25 1 4.1103 -6.0180 7.1420 26 1 3.5987 -5.5628 4.8158 27 6 2.0689 -0.7738 1.2253 28 1 -0.3634 -1.0276 0.0131 29 1 -0.3633 0.5251 0.8834 30 1 -0.3633 0.5025 -0.8964 31 1 2.5938 1.6851 0.7328 32 1 0.7606 3.9454 0.5226 33 1 2.4224 4.4112 1.0034 34 1 2.3845 6.3894 -0.3751 35 1 0.6975 6.3354 0.2344 36 1 1.1184 6.4250 -2.4272 37 1 -0.1153 5.2984 -1.7832 38 1 2.6410 4.7099 -2.8535 39 1 1.1724 3.6942 -2.8910 40 1 2.7081 -0.1268 -1.8253 41 1 1.2387 -1.1470 -1.8262 42 1 2.2633 -2.8403 -0.5745 43 1 3.7644 -2.1340 -1.2461 44 1 2.7644 -3.3157 1.6206 45 1 4.4801 -3.1414 1.1801 46 1 4.0923 -3.9651 3.7917 47 1 5.0601 -3.6725 8.1902 48 1 1.3253 -1.4872 1.5804 49 1 2.3435 -0.0833 2.0228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754675061.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:45 Heat of formation + Delta-G solvation = -136.226798 kcal Electronic energy + Delta-G solvation = -31071.676840 eV Core-core repulsion = 26753.921128 eV Total energy + Delta-G solvation = -4317.755712 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 5.06 seconds Orbital eigenvalues (eV) -48.97628 -41.64488 -40.49937 -39.30221 -37.78871 -36.11034 -35.62567 -33.75362 -32.88544 -30.81229 -29.85750 -29.47180 -28.94216 -27.02134 -25.39440 -23.80834 -22.52895 -21.91551 -21.26764 -21.01464 -20.45415 -20.16486 -19.07945 -17.95825 -17.40158 -17.14152 -16.88744 -16.57476 -16.40082 -16.30569 -16.04635 -15.61468 -15.29629 -15.17005 -15.07393 -14.71210 -14.58625 -14.36597 -14.18883 -14.13617 -13.85067 -13.43157 -13.38769 -13.05767 -13.02762 -13.01345 -12.69954 -12.56102 -12.41834 -12.32545 -12.18648 -12.12510 -11.97795 -11.93264 -11.88238 -11.83314 -11.51339 -11.47209 -10.65869 -10.36912 -10.23456 -10.19569 -9.40776 -8.40801 -6.01192 1.29967 1.31902 1.35546 1.44081 1.92155 1.95933 2.22977 2.64588 3.10414 3.14777 3.17845 3.24479 3.33509 3.49130 3.62357 3.73493 4.00030 4.15103 4.19193 4.20019 4.26237 4.27945 4.35629 4.39145 4.42495 4.48978 4.58302 4.63142 4.68838 4.71585 4.76786 4.80297 4.91486 4.96392 5.00463 5.06750 5.12323 5.14112 5.19742 5.22959 5.35955 5.47635 5.53095 5.79801 5.89064 6.01044 6.36029 6.60064 6.88992 6.97712 7.40312 7.96680 8.76676 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.018098 B = 0.002564 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.720056 B =10918.855749 C =11790.602865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.169 3.831 3 N -0.699 5.699 4 C 0.505 3.495 5 O -0.543 6.543 6 C 0.095 3.905 7 F -0.203 7.203 8 C -0.144 4.144 9 C -0.119 4.119 10 C -0.117 4.117 11 C -0.142 4.142 12 C -0.112 4.112 13 C 0.033 3.967 14 N -0.508 5.508 15 C 0.042 3.958 16 C 0.451 3.549 17 O -0.603 6.603 18 N -0.592 5.592 19 C -0.324 4.324 20 H 0.057 0.943 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.963 3.037 24 H -0.259 1.259 25 H -0.276 1.276 26 H -0.231 1.231 27 C 0.038 3.962 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.406 0.594 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.058 0.942 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.121 0.879 46 H 0.389 0.611 47 H 0.278 0.722 48 H 0.061 0.939 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.570 7.373 -20.964 24.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.083 3.917 3 N -0.349 5.349 4 C 0.290 3.710 5 O -0.421 6.421 6 C 0.073 3.927 7 F -0.184 7.184 8 C -0.182 4.182 9 C -0.157 4.157 10 C -0.154 4.154 11 C -0.180 4.180 12 C -0.151 4.151 13 C -0.094 4.094 14 N -0.233 5.233 15 C -0.089 4.089 16 C 0.239 3.761 17 O -0.487 6.487 18 N -0.234 5.234 19 C -0.453 4.453 20 H 0.075 0.925 21 C -0.214 4.214 22 N -0.575 5.575 23 Si 0.783 3.217 24 H -0.183 1.183 25 H -0.202 1.202 26 H -0.154 1.154 27 C -0.090 4.090 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.242 0.758 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.101 0.899 45 H 0.139 0.861 46 H 0.224 0.776 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.459 8.164 -21.253 25.055 hybrid contribution 0.226 -1.338 1.132 1.767 sum -10.233 6.826 -20.121 23.583 Atomic orbital electron populations 1.22129 0.92310 1.03517 1.02864 1.21199 0.94444 0.80877 0.95171 1.46211 1.52133 1.12250 1.24341 1.20904 0.80730 0.87492 0.81901 1.90628 1.39170 1.76499 1.35802 1.22050 0.75986 0.93265 1.01369 1.92909 1.30335 1.97401 1.97748 1.23043 1.02543 0.97158 0.95458 1.22542 1.02503 0.94528 0.96090 1.22352 0.99518 0.97055 0.96491 1.22741 1.02040 0.98207 0.94966 1.22591 0.99752 0.96413 0.96352 1.23270 0.99850 0.97036 0.89228 1.65147 1.33835 1.22011 1.02304 1.22073 1.03810 0.93289 0.89760 1.20780 0.81699 0.86427 0.87196 1.90514 1.56021 1.17832 1.84315 1.42043 1.65073 1.08241 1.08032 1.18984 1.46916 0.94371 0.85070 0.92475 1.26089 0.96114 1.05046 0.94150 1.69805 1.48109 1.37612 1.02020 0.85391 0.80233 0.76485 0.79591 1.18323 1.20152 1.15422 1.23388 0.91161 0.98126 0.96301 0.90023 0.92355 0.91093 0.75790 0.89198 0.89296 0.90460 0.88909 0.89132 0.90641 0.89621 0.89103 0.92327 0.89092 0.91299 0.88995 0.89913 0.86129 0.77584 0.91212 0.92102 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.17 71.98 0.59 -2.65 16 2 C 0.17 4.19 1.01 4.58 0.00 4.20 16 3 N -0.70 -17.93 5.05 -418.50 -2.11 -20.04 16 4 C 0.51 12.76 5.90 87.66 0.52 13.28 16 5 O -0.54 -15.33 12.51 -3.03 -0.04 -15.37 16 6 C 0.09 2.06 1.48 -10.82 -0.02 2.04 16 7 F -0.20 -5.31 16.79 44.97 0.75 -4.55 16 8 C -0.14 -2.49 6.10 31.67 0.19 -2.30 16 9 C -0.12 -1.55 6.91 31.89 0.22 -1.33 16 10 C -0.12 -1.52 6.83 31.65 0.22 -1.30 16 11 C -0.14 -2.59 6.25 31.30 0.20 -2.40 16 12 C -0.11 -2.59 5.48 31.49 0.17 -2.42 16 13 C 0.03 0.73 6.49 86.45 0.56 1.29 16 14 N -0.51 -15.00 5.19 -885.55 -4.59 -19.60 16 15 C 0.04 1.25 5.39 85.56 0.46 1.71 16 16 C 0.45 19.66 7.43 87.66 0.65 20.31 16 17 O -0.60 -31.82 14.00 -3.05 -0.04 -31.87 16 18 N -0.59 -27.17 5.09 -306.99 -1.56 -28.74 16 19 C -0.32 -18.60 10.16 84.04 0.85 -17.75 16 20 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 21 C -0.02 -0.85 5.50 84.92 0.47 -0.38 16 22 N -0.93 -55.82 13.96 21.66 0.30 -55.51 16 23 Si 0.96 38.21 27.74 68.60 1.90 40.11 16 24 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 25 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 26 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 27 C 0.04 1.13 4.79 86.53 0.41 1.55 16 28 H 0.08 1.48 8.13 -2.39 -0.02 1.46 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.66 6.32 -2.39 -0.02 1.64 16 31 H 0.41 10.88 8.27 -92.71 -0.77 10.12 16 32 H 0.09 1.50 7.85 -2.38 -0.02 1.48 16 33 H 0.09 1.57 8.11 -2.39 -0.02 1.55 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 36 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.09 1.49 8.02 -2.39 -0.02 1.47 16 39 H 0.09 1.90 6.39 -2.39 -0.02 1.88 16 40 H 0.06 1.56 7.31 -2.39 -0.02 1.55 16 41 H 0.09 1.84 7.71 -2.38 -0.02 1.82 16 42 H 0.07 1.20 7.92 -2.38 -0.02 1.18 16 43 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 44 H 0.08 1.98 7.98 -2.39 -0.02 1.96 16 45 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 46 H 0.39 14.77 5.76 -92.71 -0.53 14.24 16 47 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 48 H 0.06 1.68 7.67 -2.39 -0.02 1.66 16 49 H 0.08 2.78 6.15 -2.38 -0.01 2.77 16 Total: -1.00 -74.93 385.20 -0.27 -75.20 By element: Atomic # 1 Polarization: 46.89 SS G_CDS: -0.38 Total: 46.51 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 5.50 Total: 13.86 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -7.96 Total: -123.89 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -0.08 Total: -47.24 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.75 Total: -4.55 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 1.90 Total: 40.11 kcal Total: -74.93 -0.27 -75.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754675061.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.031 kcal (2) G-P(sol) polarization free energy of solvation -74.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.06 seconds