Wall clock time and date at job start Wed Apr 1 2020 01:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 F 1.39897 * 109.47129 * 120.00086 * 2 1 3 5 5 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 6 6 O 1.21290 * 120.00037 * 9.99241 * 5 2 1 7 7 N 1.34769 * 120.00002 * 189.99917 * 5 2 1 8 8 C 1.47183 * 135.99575 * 359.62771 * 7 5 2 9 9 C 1.52571 * 87.95308 * 206.66338 * 8 7 5 10 10 C 1.47179 * 135.99205 * 179.97438 * 7 5 2 11 11 C 1.52592 * 113.99897 * 88.37059 * 9 8 7 12 12 C 1.53252 * 109.00814 * 186.32388 * 11 9 8 13 13 N 1.46836 * 109.42377 * 303.38236 * 12 11 9 14 14 C 1.46890 * 111.00055 * 187.90687 * 13 12 11 15 15 C 1.50699 * 109.47478 * 65.43276 * 14 13 12 16 16 O 1.21297 * 119.99634 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00114 * 180.02562 * 15 14 13 18 18 C 1.37103 * 119.99810 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99745 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00005 * 179.97438 * 18 17 15 21 21 N 1.31406 * 120.00050 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99810 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47212 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46638 * 120.00043 * 22 20 18 25 25 H 1.48497 * 109.47086 * 239.99636 * 22 20 18 26 26 C 1.46839 * 111.47160 * 63.60360 * 13 12 11 27 27 C 1.52597 * 114.36222 * 220.64420 * 9 8 7 28 28 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 31 31 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 32 32 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 34 34 H 1.09001 * 113.48719 * 321.35729 * 8 7 5 35 35 H 1.09002 * 113.49168 * 91.86171 * 8 7 5 36 36 H 1.09002 * 113.49498 * 268.13160 * 10 7 5 37 37 H 1.08997 * 113.49483 * 38.65516 * 10 7 5 38 38 H 1.09001 * 109.54577 * 306.17762 * 11 9 8 39 39 H 1.08995 * 109.55301 * 66.46287 * 11 9 8 40 40 H 1.09003 * 109.47583 * 183.40423 * 12 11 9 41 41 H 1.09001 * 109.48146 * 63.37335 * 12 11 9 42 42 H 1.09002 * 109.47184 * 185.43294 * 14 13 12 43 43 H 1.09004 * 109.47601 * 305.42677 * 14 13 12 44 44 H 0.96998 * 120.00159 * 359.97438 * 17 15 14 45 45 H 0.97000 * 120.00606 * 179.97438 * 21 20 18 46 46 H 1.09006 * 109.47293 * 176.40431 * 26 13 12 47 47 H 1.09006 * 109.48800 * 56.38854 * 26 13 12 48 48 H 1.08998 * 109.54806 * 293.70427 * 27 9 8 49 49 H 1.08991 * 109.55039 * 53.89900 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 9 1.9964 -0.6595 1.1422 5 6 2.0324 -0.7103 -1.2305 6 8 1.2593 -1.0106 -2.1155 7 7 3.3407 -1.0118 -1.3476 8 6 4.5490 -0.8185 -0.5297 9 6 5.3613 -0.8483 -1.8209 10 6 4.1887 -1.6735 -2.3522 11 6 5.5186 0.5156 -2.4868 12 6 6.2096 0.3325 -3.8424 13 7 7.4958 -0.3484 -3.6468 14 6 8.2720 -0.3755 -4.8935 15 6 8.6513 1.0309 -5.2799 16 8 8.3081 1.9641 -4.5852 17 7 9.3708 1.2518 -6.3980 18 6 9.7153 2.5314 -6.7497 19 1 9.4098 3.3623 -6.1311 20 6 10.4575 2.7592 -7.9021 21 7 10.8297 1.7481 -8.6544 22 14 10.9263 4.5026 -8.3817 23 1 10.3903 5.4540 -7.3752 24 1 12.4057 4.6205 -8.4349 25 1 10.3562 4.8193 -9.7158 26 6 7.3108 -1.7035 -3.1124 27 6 6.6739 -1.6202 -1.7211 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 4.5797 0.1451 -0.0211 35 1 4.7611 -1.6547 0.1365 36 1 4.3017 -2.7451 -2.1877 37 1 3.9162 -1.4302 -3.3791 38 1 4.5364 0.9641 -2.6358 39 1 6.1244 1.1632 -1.8532 40 1 6.3804 1.3079 -4.2980 41 1 5.5761 -0.2679 -4.4952 42 1 9.1751 -0.9679 -4.7465 43 1 7.6708 -0.8206 -5.6864 44 1 9.6448 0.5056 -6.9537 45 1 11.3475 1.9071 -9.4591 46 1 8.2781 -2.2009 -3.0402 47 1 6.6593 -2.2708 -3.7772 48 1 7.3503 -1.1030 -1.0407 49 1 6.4784 -2.6252 -1.3472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754958508.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:23 Heat of formation + Delta-G solvation = -77.517986 kcal Electronic energy + Delta-G solvation = -30708.923416 eV Core-core repulsion = 26393.713509 eV Total energy + Delta-G solvation = -4315.209907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.23519 -41.33489 -39.16698 -38.34243 -36.62771 -34.00214 -33.91052 -32.37070 -31.24459 -30.85792 -28.77501 -27.88517 -26.63067 -26.16674 -24.26455 -23.40424 -23.09072 -21.49628 -19.55244 -19.21244 -18.39885 -17.85325 -17.81557 -16.76928 -16.42215 -16.03442 -15.72085 -15.46694 -15.26644 -14.96300 -14.61932 -14.56103 -14.12971 -13.86894 -13.78144 -13.68509 -13.52712 -13.14798 -12.93387 -12.78816 -12.72456 -12.68006 -12.47143 -12.38941 -12.33228 -11.95436 -11.86860 -11.51101 -11.42761 -11.29914 -11.12313 -11.04791 -10.64770 -10.43982 -10.40272 -10.33745 -10.22894 -9.89699 -9.48019 -9.02158 -8.42443 -7.97890 -7.83454 -6.42250 -3.82936 2.12478 2.39151 3.15719 3.26405 3.33301 3.71381 3.88890 3.91437 4.03408 4.06212 4.16664 4.25040 4.36007 4.52794 4.66831 4.84874 5.00009 5.04570 5.05878 5.08342 5.20738 5.21467 5.24025 5.26054 5.28333 5.40995 5.42441 5.48806 5.54811 5.60606 5.61376 5.61907 5.72799 5.78306 5.84305 5.86837 5.96765 6.02025 6.13030 6.27600 6.35270 6.48162 7.29234 7.35213 7.43611 7.54952 7.68743 8.06405 8.61378 9.17873 9.54406 10.05954 10.75578 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.020533 B = 0.002201 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.327672 B =12719.533809 C =13369.932605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.109 3.891 3 C -0.174 4.174 4 F -0.196 7.196 5 C 0.528 3.472 6 O -0.527 6.527 7 N -0.634 5.634 8 C 0.108 3.892 9 C -0.092 4.092 10 C 0.110 3.890 11 C -0.083 4.083 12 C 0.055 3.945 13 N -0.515 5.515 14 C 0.047 3.953 15 C 0.444 3.556 16 O -0.577 6.577 17 N -0.565 5.565 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.056 3.944 27 C -0.094 4.094 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.021 0.979 42 H 0.088 0.912 43 H 0.046 0.954 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.076 0.924 47 H 0.030 0.970 48 H 0.082 0.918 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.052 -8.310 16.881 23.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.087 3.913 3 C -0.231 4.231 4 F -0.176 7.176 5 C 0.315 3.685 6 O -0.403 6.403 7 N -0.368 5.368 8 C -0.015 4.015 9 C -0.093 4.093 10 C -0.012 4.012 11 C -0.121 4.121 12 C -0.072 4.072 13 N -0.240 5.240 14 C -0.085 4.085 15 C 0.229 3.771 16 O -0.462 6.462 17 N -0.202 5.202 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.072 4.072 27 C -0.132 4.132 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.124 0.876 41 H 0.039 0.961 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.094 0.906 47 H 0.048 0.952 48 H 0.100 0.900 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.563 -7.534 17.084 23.679 hybrid contribution 0.086 -0.322 -1.185 1.231 sum -14.476 -7.856 15.899 22.892 Atomic orbital electron populations 1.22185 0.90762 1.04479 1.04122 1.21141 0.96639 0.93105 0.80379 1.22424 1.03165 0.92779 1.04780 1.92905 1.90315 1.82701 1.51719 1.20378 0.80114 0.79531 0.88499 1.90743 1.54051 1.53752 1.41780 1.49575 1.05471 1.57796 1.24008 1.23155 0.80627 1.02639 0.95065 1.21867 0.94013 0.97723 0.95673 1.23146 0.86276 0.97365 0.94382 1.21239 1.00163 0.93648 0.97010 1.22245 0.88049 1.01272 0.95669 1.61376 1.18191 1.16288 1.28127 1.21826 0.98375 0.97431 0.90832 1.19754 0.84136 0.89799 0.83376 1.90480 1.58073 1.44346 1.53265 1.41890 1.47419 1.09342 1.21527 1.19736 1.30830 0.84944 1.07166 0.87873 1.25260 0.97148 0.99471 0.96137 1.69615 1.38371 1.30784 1.15565 0.85812 0.78147 0.82016 0.78443 1.19228 1.20762 1.20799 1.22099 1.00099 0.89954 0.95075 1.21399 0.94731 0.99266 0.97850 0.89625 0.90887 0.90512 0.89927 0.90546 0.89846 0.89956 0.89180 0.89568 0.90181 0.91788 0.89976 0.87610 0.96124 0.89343 0.93594 0.77511 0.91941 0.90553 0.95213 0.89978 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 8.28 37.16 0.31 -0.99 16 2 C 0.11 1.03 1.41 -91.77 -0.13 0.91 16 3 C -0.17 -1.30 8.91 37.16 0.33 -0.97 16 4 F -0.20 -2.00 16.33 2.25 0.04 -1.96 16 5 C 0.53 6.49 7.04 -10.99 -0.08 6.41 16 6 O -0.53 -8.21 16.75 5.55 0.09 -8.11 16 7 N -0.63 -6.88 3.47 -185.30 -0.64 -7.53 16 8 C 0.11 0.92 6.99 -8.33 -0.06 0.86 16 9 C -0.09 -0.89 0.85 -155.19 -0.13 -1.02 16 10 C 0.11 1.13 7.68 -8.16 -0.06 1.07 16 11 C -0.08 -1.02 5.27 -26.81 -0.14 -1.16 16 12 C 0.06 0.85 5.09 -3.73 -0.02 0.83 16 13 N -0.52 -7.91 4.35 -235.86 -1.03 -8.94 16 14 C 0.05 0.80 5.45 -4.98 -0.03 0.77 16 15 C 0.44 10.14 7.44 -10.99 -0.08 10.06 16 16 O -0.58 -14.96 13.89 5.54 0.08 -14.88 16 17 N -0.57 -14.05 5.29 -10.96 -0.06 -14.11 16 18 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 19 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 22 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.06 0.63 5.45 -3.73 -0.02 0.61 16 27 C -0.09 -0.85 5.35 -26.81 -0.14 -0.99 16 28 H 0.08 0.71 7.99 -51.93 -0.41 0.29 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.57 6.32 -51.93 -0.33 0.25 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.65 6.47 -51.93 -0.34 0.31 16 35 H 0.09 0.64 8.10 -51.93 -0.42 0.22 16 36 H 0.09 0.76 8.01 -51.93 -0.42 0.34 16 37 H 0.08 0.94 7.78 -51.93 -0.40 0.53 16 38 H 0.06 0.78 7.95 -51.93 -0.41 0.37 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.11 2.04 5.73 -51.93 -0.30 1.74 16 41 H 0.02 0.30 7.81 -51.93 -0.41 -0.10 16 42 H 0.09 1.36 7.96 -51.93 -0.41 0.95 16 43 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 44 H 0.39 9.35 7.90 -40.82 -0.32 9.02 16 45 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 46 H 0.08 0.80 7.97 -51.93 -0.41 0.38 16 47 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 49 H 0.07 0.48 8.02 -51.93 -0.42 0.07 16 LS Contribution 393.00 15.07 5.92 5.92 Total: -1.00 -32.59 393.00 -8.29 -40.88 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.89 Total: 7.96 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -0.49 Total: 8.54 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -1.00 Total: -54.20 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: 0.17 Total: -23.00 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.59 -8.29 -40.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754958508.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.637 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds