Wall clock time and date at job start Wed Apr 1 2020 01:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 F 1.39897 * 109.47129 * 120.00086 * 2 1 3 5 5 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 6 6 O 1.21290 * 120.00037 * 9.99241 * 5 2 1 7 7 N 1.34769 * 120.00002 * 189.99917 * 5 2 1 8 8 C 1.47183 * 135.99575 * 359.62771 * 7 5 2 9 9 C 1.52571 * 87.95308 * 206.66338 * 8 7 5 10 10 C 1.47179 * 135.99205 * 179.97438 * 7 5 2 11 11 C 1.52592 * 113.99897 * 88.37059 * 9 8 7 12 12 C 1.53252 * 109.00814 * 186.32388 * 11 9 8 13 13 N 1.46836 * 109.42377 * 303.38236 * 12 11 9 14 14 C 1.46890 * 111.00055 * 187.90687 * 13 12 11 15 15 C 1.50699 * 109.47478 * 65.43276 * 14 13 12 16 16 O 1.21297 * 119.99634 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00114 * 180.02562 * 15 14 13 18 18 C 1.37103 * 119.99810 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99745 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00005 * 179.97438 * 18 17 15 21 21 N 1.31406 * 120.00050 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99810 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47212 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46638 * 120.00043 * 22 20 18 25 25 H 1.48497 * 109.47086 * 239.99636 * 22 20 18 26 26 C 1.46839 * 111.47160 * 63.60360 * 13 12 11 27 27 C 1.52597 * 114.36222 * 220.64420 * 9 8 7 28 28 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 31 31 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 32 32 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 34 34 H 1.09001 * 113.48719 * 321.35729 * 8 7 5 35 35 H 1.09002 * 113.49168 * 91.86171 * 8 7 5 36 36 H 1.09002 * 113.49498 * 268.13160 * 10 7 5 37 37 H 1.08997 * 113.49483 * 38.65516 * 10 7 5 38 38 H 1.09001 * 109.54577 * 306.17762 * 11 9 8 39 39 H 1.08995 * 109.55301 * 66.46287 * 11 9 8 40 40 H 1.09003 * 109.47583 * 183.40423 * 12 11 9 41 41 H 1.09001 * 109.48146 * 63.37335 * 12 11 9 42 42 H 1.09002 * 109.47184 * 185.43294 * 14 13 12 43 43 H 1.09004 * 109.47601 * 305.42677 * 14 13 12 44 44 H 0.96998 * 120.00159 * 359.97438 * 17 15 14 45 45 H 0.97000 * 120.00606 * 179.97438 * 21 20 18 46 46 H 1.09006 * 109.47293 * 176.40431 * 26 13 12 47 47 H 1.09006 * 109.48800 * 56.38854 * 26 13 12 48 48 H 1.08998 * 109.54806 * 293.70427 * 27 9 8 49 49 H 1.08991 * 109.55039 * 53.89900 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 9 1.9964 -0.6595 1.1422 5 6 2.0324 -0.7103 -1.2305 6 8 1.2593 -1.0106 -2.1155 7 7 3.3407 -1.0118 -1.3476 8 6 4.5490 -0.8185 -0.5297 9 6 5.3613 -0.8483 -1.8209 10 6 4.1887 -1.6735 -2.3522 11 6 5.5186 0.5156 -2.4868 12 6 6.2096 0.3325 -3.8424 13 7 7.4958 -0.3484 -3.6468 14 6 8.2720 -0.3755 -4.8935 15 6 8.6513 1.0309 -5.2799 16 8 8.3081 1.9641 -4.5852 17 7 9.3708 1.2518 -6.3980 18 6 9.7153 2.5314 -6.7497 19 1 9.4098 3.3623 -6.1311 20 6 10.4575 2.7592 -7.9021 21 7 10.8297 1.7481 -8.6544 22 14 10.9263 4.5026 -8.3817 23 1 10.3903 5.4540 -7.3752 24 1 12.4057 4.6205 -8.4349 25 1 10.3562 4.8193 -9.7158 26 6 7.3108 -1.7035 -3.1124 27 6 6.6739 -1.6202 -1.7211 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 4.5797 0.1451 -0.0211 35 1 4.7611 -1.6547 0.1365 36 1 4.3017 -2.7451 -2.1877 37 1 3.9162 -1.4302 -3.3791 38 1 4.5364 0.9641 -2.6358 39 1 6.1244 1.1632 -1.8532 40 1 6.3804 1.3079 -4.2980 41 1 5.5761 -0.2679 -4.4952 42 1 9.1751 -0.9679 -4.7465 43 1 7.6708 -0.8206 -5.6864 44 1 9.6448 0.5056 -6.9537 45 1 11.3475 1.9071 -9.4591 46 1 8.2781 -2.2009 -3.0402 47 1 6.6593 -2.2708 -3.7772 48 1 7.3503 -1.1030 -1.0407 49 1 6.4784 -2.6252 -1.3472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754958508.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:22 Heat of formation + Delta-G solvation = -100.214448 kcal Electronic energy + Delta-G solvation = -30709.907609 eV Core-core repulsion = 26393.713509 eV Total energy + Delta-G solvation = -4316.194099 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.99152 -42.20127 -40.43670 -39.73782 -37.89432 -35.88365 -34.72585 -33.51462 -33.13279 -31.87824 -29.86953 -28.57648 -27.74245 -27.23564 -25.89949 -24.37649 -24.00480 -22.51727 -21.00322 -20.38081 -19.86285 -19.26573 -18.63349 -17.71694 -17.64415 -17.19413 -16.72944 -16.55150 -16.37921 -16.25721 -16.08783 -15.62898 -15.43986 -15.28716 -15.03128 -14.87603 -14.45276 -14.03776 -13.91110 -13.77401 -13.57921 -13.53393 -13.45804 -13.38814 -13.17983 -13.13311 -13.10804 -12.83560 -12.79732 -12.48796 -12.39339 -12.12222 -12.07072 -12.06051 -11.69005 -11.52429 -11.34625 -11.26470 -10.77717 -10.21114 -9.97776 -9.86419 -9.12232 -8.45297 -5.93411 1.23143 1.36712 1.41753 1.55707 1.58905 2.08358 2.29195 2.80555 2.94638 3.18320 3.21882 3.36711 3.43190 3.48855 3.64145 3.74490 3.82081 4.01781 4.24145 4.27723 4.28808 4.36413 4.41757 4.48327 4.51685 4.53613 4.56945 4.60106 4.61161 4.63089 4.67258 4.72569 4.78356 4.89546 4.93823 5.02849 5.05726 5.10305 5.12116 5.20684 5.26333 5.40868 5.42831 5.93364 6.12965 6.33571 6.51057 6.62932 6.78958 7.15243 7.59470 8.15316 8.72415 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.020533 B = 0.002201 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.327672 B =12719.533809 C =13369.932605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.111 3.889 3 C -0.171 4.171 4 F -0.198 7.198 5 C 0.517 3.483 6 O -0.571 6.571 7 N -0.639 5.639 8 C 0.114 3.886 9 C -0.084 4.084 10 C 0.107 3.893 11 C -0.074 4.074 12 C 0.060 3.940 13 N -0.530 5.530 14 C 0.058 3.942 15 C 0.442 3.558 16 O -0.612 6.612 17 N -0.577 5.577 18 C -0.328 4.328 19 H 0.078 0.922 20 C -0.015 4.015 21 N -0.922 5.922 22 Si 0.991 3.009 23 H -0.273 1.273 24 H -0.271 1.271 25 H -0.272 1.272 26 C 0.052 3.948 27 C -0.087 4.087 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.023 0.977 42 H 0.113 0.887 43 H 0.060 0.940 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.091 0.909 47 H 0.039 0.961 48 H 0.082 0.918 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.822 -9.486 18.585 25.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.089 3.911 3 C -0.229 4.229 4 F -0.178 7.178 5 C 0.306 3.694 6 O -0.451 6.451 7 N -0.372 5.372 8 C -0.007 4.007 9 C -0.085 4.085 10 C -0.015 4.015 11 C -0.112 4.112 12 C -0.068 4.068 13 N -0.255 5.255 14 C -0.073 4.073 15 C 0.229 3.771 16 O -0.498 6.498 17 N -0.215 5.215 18 C -0.458 4.458 19 H 0.096 0.904 20 C -0.215 4.215 21 N -0.563 5.563 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.198 1.198 26 C -0.075 4.075 27 C -0.125 4.125 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.041 0.959 42 H 0.131 0.869 43 H 0.078 0.922 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.109 0.891 47 H 0.057 0.943 48 H 0.101 0.899 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.306 -8.738 18.809 25.195 hybrid contribution 0.006 0.020 -1.701 1.701 sum -14.300 -8.717 17.108 23.941 Atomic orbital electron populations 1.22204 0.89975 1.04140 1.05116 1.21191 0.97263 0.93590 0.79023 1.22438 1.03142 0.91518 1.05760 1.92898 1.90412 1.82912 1.51621 1.20955 0.80259 0.79267 0.88945 1.90713 1.55252 1.55643 1.43487 1.49745 1.05653 1.57125 1.24645 1.23295 0.78623 1.04267 0.94519 1.21681 0.94680 0.95921 0.96195 1.23277 0.86170 0.98706 0.93382 1.21089 0.99141 0.95520 0.95423 1.22058 0.88626 0.98925 0.97201 1.61380 1.17867 1.19183 1.27048 1.21712 0.99978 0.93318 0.92338 1.20829 0.82220 0.92017 0.82012 1.90460 1.58807 1.46414 1.54088 1.41970 1.48398 1.08652 1.22499 1.19666 1.32524 0.85621 1.07954 0.90356 1.26020 0.96561 1.03293 0.95588 1.69675 1.38499 1.32320 1.15834 0.84893 0.78202 0.77330 0.78057 1.19783 1.19609 1.19785 1.22283 1.01496 0.87491 0.96234 1.21419 0.93616 1.01018 0.96412 0.90053 0.91930 0.88054 0.87782 0.90577 0.90051 0.89123 0.86526 0.87223 0.92268 0.92366 0.90887 0.92323 0.95933 0.86931 0.92172 0.77111 0.91404 0.89066 0.94294 0.89935 0.87672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 8.28 71.98 0.60 -1.83 16 2 C 0.11 1.96 1.41 -11.54 -0.02 1.95 16 3 C -0.17 -2.30 8.91 71.98 0.64 -1.65 16 4 F -0.20 -3.62 16.33 44.97 0.73 -2.89 16 5 C 0.52 12.44 7.04 87.66 0.62 13.06 16 6 O -0.57 -18.11 16.75 -3.06 -0.05 -18.17 16 7 N -0.64 -12.91 3.47 -858.56 -2.98 -15.89 16 8 C 0.11 1.62 6.99 83.23 0.58 2.20 16 9 C -0.08 -1.43 0.85 -52.62 -0.04 -1.48 16 10 C 0.11 1.99 7.68 83.34 0.64 2.63 16 11 C -0.07 -1.81 5.27 30.54 0.16 -1.64 16 12 C 0.06 1.87 5.09 86.40 0.44 2.31 16 13 N -0.53 -15.78 4.35 -900.12 -3.92 -19.70 16 14 C 0.06 1.93 5.45 85.56 0.47 2.40 16 15 C 0.44 20.70 7.44 87.66 0.65 21.35 16 16 O -0.61 -33.05 13.89 -3.08 -0.04 -33.09 16 17 N -0.58 -29.50 5.29 -306.98 -1.62 -31.13 16 18 C -0.33 -18.58 9.68 84.04 0.81 -17.76 16 19 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 20 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 21 N -0.92 -49.85 13.05 21.66 0.28 -49.57 16 22 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 26 C 0.05 1.02 5.45 86.40 0.47 1.49 16 27 C -0.09 -1.25 5.35 30.54 0.16 -1.09 16 28 H 0.08 1.32 7.99 -2.39 -0.02 1.30 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 1.02 6.32 -2.39 -0.02 1.00 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 1.18 6.47 -2.39 -0.02 1.16 16 35 H 0.12 1.14 8.10 -2.39 -0.02 1.12 16 36 H 0.11 1.56 8.01 -2.39 -0.02 1.55 16 37 H 0.06 1.36 7.78 -2.39 -0.02 1.34 16 38 H 0.06 1.46 7.95 -2.39 -0.02 1.44 16 39 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 2.40 5.73 -2.39 -0.01 2.38 16 41 H 0.02 0.68 7.81 -2.39 -0.02 0.66 16 42 H 0.11 3.25 7.96 -2.39 -0.02 3.23 16 43 H 0.06 1.86 8.13 -2.38 -0.02 1.84 16 44 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 45 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 46 H 0.09 1.56 7.97 -2.38 -0.02 1.54 16 47 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 48 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.10 0.88 8.02 -2.39 -0.02 0.86 16 Total: -1.00 -73.73 393.00 1.30 -72.43 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: 0.23 Total: 31.34 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: 6.65 Total: 21.59 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -8.24 Total: -116.29 kcal Atomic # 8 Polarization: -51.16 SS G_CDS: -0.09 Total: -51.25 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.73 Total: -2.89 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -73.73 1.30 -72.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754958508.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.786 kcal (2) G-P(sol) polarization free energy of solvation -73.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds