Wall clock time and date at job start Wed Apr 1 2020 01:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46846 * 2 1 4 4 H 1.09002 * 109.47398 * 305.00335 * 3 2 1 5 5 F 1.39904 * 109.47059 * 65.00612 * 3 2 1 6 6 C 1.50703 * 109.46912 * 185.00257 * 3 2 1 7 7 O 1.21283 * 119.99734 * 315.00056 * 6 3 2 8 8 N 1.34774 * 120.00206 * 135.00569 * 6 3 2 9 9 C 1.47180 * 135.99038 * 359.62378 * 8 6 3 10 10 C 1.52571 * 87.95376 * 206.67081 * 9 8 6 11 11 C 1.47172 * 135.99679 * 180.02562 * 8 6 3 12 12 C 1.52590 * 114.00283 * 88.36943 * 10 9 8 13 13 C 1.53253 * 109.01332 * 186.32672 * 12 10 9 14 14 N 1.46839 * 109.41917 * 303.39019 * 13 12 10 15 15 C 1.46901 * 110.99390 * 187.90454 * 14 13 12 16 16 C 1.50696 * 109.47619 * 65.42596 * 15 14 13 17 17 O 1.21293 * 119.99828 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00426 * 179.97438 * 16 15 14 19 19 C 1.37096 * 120.00036 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00171 * 0.02562 * 19 18 16 21 21 C 1.38951 * 120.00019 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00416 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99852 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47047 * 89.99707 * 23 21 19 25 25 H 1.48499 * 109.47153 * 209.99640 * 23 21 19 26 26 H 1.48502 * 109.47069 * 329.99768 * 23 21 19 27 27 C 1.46831 * 111.47975 * 63.60500 * 14 13 12 28 28 C 1.52594 * 114.36568 * 220.64940 * 10 9 8 29 29 H 1.08996 * 109.46751 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46824 * 299.99583 * 1 2 3 31 31 H 1.09001 * 109.47241 * 59.99481 * 1 2 3 32 32 H 1.09002 * 109.46824 * 240.00417 * 2 1 3 33 33 H 1.08991 * 109.47210 * 120.00501 * 2 1 3 34 34 H 1.09001 * 113.49359 * 321.36350 * 9 8 6 35 35 H 1.09003 * 113.49075 * 91.86897 * 9 8 6 36 36 H 1.09009 * 113.48669 * 268.12684 * 11 8 6 37 37 H 1.08995 * 113.49427 * 38.57477 * 11 8 6 38 38 H 1.08999 * 109.54550 * 306.18764 * 12 10 9 39 39 H 1.08994 * 109.54779 * 66.46996 * 12 10 9 40 40 H 1.08992 * 109.47766 * 183.40215 * 13 12 10 41 41 H 1.08999 * 109.47496 * 63.37479 * 13 12 10 42 42 H 1.09002 * 109.46820 * 185.43038 * 15 14 13 43 43 H 1.09004 * 109.47119 * 305.42718 * 15 14 13 44 44 H 0.96997 * 119.99663 * 0.02562 * 18 16 15 45 45 H 0.96999 * 120.00321 * 180.02562 * 22 21 19 46 46 H 1.08995 * 109.48060 * 176.40837 * 27 14 13 47 47 H 1.09002 * 109.49406 * 56.37649 * 27 14 13 48 48 H 1.09001 * 109.54970 * 293.70535 * 28 10 9 49 49 H 1.08995 * 109.54741 * 53.89172 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 9 1.6700 2.0679 1.1955 6 6 3.5419 1.4443 -0.1239 7 8 4.2064 0.6811 0.5445 8 7 4.1467 2.2942 -0.9774 9 6 3.7095 3.3279 -1.9294 10 6 4.9883 3.0643 -2.7187 11 6 5.5334 2.5906 -1.3713 12 6 4.8567 1.9592 -3.7627 13 6 6.2351 1.6817 -4.3724 14 7 6.7791 2.9240 -4.9353 15 6 8.0109 2.6638 -5.6921 16 6 7.6908 1.8184 -6.8978 17 8 6.5486 1.4676 -7.1065 18 7 8.6733 1.4530 -7.7448 19 6 8.3819 0.6844 -8.8420 20 1 7.3649 0.3720 -9.0278 21 6 9.3950 0.3072 -9.7150 22 7 9.1156 -0.4291 -10.7670 23 14 11.1542 0.8469 -9.3932 24 1 11.8382 -0.1696 -8.5541 25 1 11.8730 0.9873 -10.6850 26 1 11.1498 2.1520 -8.6847 27 6 7.0052 3.9329 -3.8927 28 6 5.6645 4.3208 -3.2596 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.8028 3.0624 -2.4731 35 1 3.6645 4.3269 -1.4957 36 1 5.9913 3.3864 -0.7837 37 1 6.1634 1.7041 -1.4438 38 1 4.4783 1.0534 -3.2891 39 1 4.1689 2.2776 -4.5460 40 1 6.1399 0.9361 -5.1616 41 1 6.9062 1.3087 -3.5987 42 1 8.4448 3.6097 -6.0163 43 1 8.7228 2.1362 -5.0572 44 1 9.5866 1.7339 -7.5781 45 1 9.8229 -0.6927 -11.3762 46 1 7.4671 4.8155 -4.3350 47 1 7.6637 3.5232 -3.1268 48 1 5.0260 4.7834 -4.0123 49 1 5.8344 5.0234 -2.4439 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754960350.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:35 Heat of formation + Delta-G solvation = -75.038843 kcal Electronic energy + Delta-G solvation = -30295.144126 eV Core-core repulsion = 25980.041723 eV Total energy + Delta-G solvation = -4315.102403 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.25161 -41.41413 -39.16648 -38.43491 -36.74802 -34.35840 -33.98639 -32.54148 -31.67606 -30.96174 -29.39899 -27.80085 -26.38574 -26.04317 -24.00925 -23.40036 -22.37881 -21.63800 -19.85113 -19.38741 -18.50646 -18.26386 -17.92507 -17.13394 -16.60545 -16.05613 -15.90337 -15.63941 -15.41616 -15.07595 -14.87911 -14.59736 -14.29278 -14.13007 -13.95569 -13.76609 -13.49327 -13.26662 -13.19207 -12.95346 -12.69686 -12.64962 -12.54030 -12.38961 -12.20537 -12.05937 -11.86166 -11.51183 -11.49378 -11.30258 -11.20179 -11.16499 -10.73468 -10.61101 -10.52419 -10.49016 -9.99256 -9.94940 -9.54329 -9.10759 -8.56898 -8.19708 -7.96620 -6.32656 -3.84028 2.05341 2.30444 3.01012 3.05300 3.13843 3.69321 3.71882 3.81979 3.98274 4.04845 4.08825 4.20703 4.39637 4.49845 4.58110 4.72395 4.80293 4.87515 4.98767 5.01371 5.03352 5.13604 5.18348 5.20093 5.27386 5.32914 5.35090 5.41681 5.44221 5.52981 5.53643 5.64907 5.67312 5.73055 5.73555 5.80158 5.85651 5.91186 5.93835 6.05475 6.27374 6.39896 7.15614 7.26931 7.32116 7.57131 7.63686 8.13030 8.58590 8.93732 9.41006 9.81736 10.80411 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.020022 B = 0.002148 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.150165 B =13030.785029 C =13713.651007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.142 4.142 3 C 0.089 3.911 4 H 0.099 0.901 5 F -0.190 7.190 6 C 0.520 3.480 7 O -0.523 6.523 8 N -0.638 5.638 9 C 0.103 3.897 10 C -0.091 4.091 11 C 0.110 3.890 12 C -0.084 4.084 13 C 0.054 3.946 14 N -0.515 5.515 15 C 0.044 3.956 16 C 0.452 3.548 17 O -0.559 6.559 18 N -0.591 5.591 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.269 1.269 27 C 0.056 3.944 28 C -0.094 4.094 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.022 0.978 42 H 0.090 0.910 43 H 0.047 0.953 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.076 0.924 47 H 0.030 0.970 48 H 0.082 0.918 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.213 9.837 20.542 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.180 4.180 3 C 0.050 3.950 4 H 0.117 0.883 5 F -0.171 7.171 6 C 0.307 3.693 7 O -0.398 6.398 8 N -0.374 5.374 9 C -0.020 4.020 10 C -0.092 4.092 11 C -0.012 4.012 12 C -0.121 4.121 13 C -0.073 4.073 14 N -0.240 5.240 15 C -0.088 4.088 16 C 0.238 3.762 17 O -0.441 6.441 18 N -0.231 5.231 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.072 4.072 28 C -0.133 4.133 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.040 0.960 42 H 0.108 0.892 43 H 0.065 0.935 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.049 0.951 48 H 0.101 0.899 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.029 9.103 20.439 24.945 hybrid contribution 2.175 0.198 0.740 2.306 sum -8.854 9.301 21.179 24.768 Atomic orbital electron populations 1.21773 0.93933 1.02821 1.02501 1.22008 0.97440 0.93309 1.05211 1.21554 0.91533 0.96468 0.85479 0.88271 1.92877 1.91961 1.83967 1.48316 1.20537 0.90024 0.80228 0.78492 1.90747 1.66234 1.39575 1.43217 1.49685 1.10743 1.36278 1.40676 1.23172 0.99169 0.91704 0.87923 1.21846 0.95428 0.97910 0.93995 1.23139 0.84688 1.00673 0.92715 1.21246 0.98482 0.96085 0.96320 1.22263 0.94052 0.92530 0.98504 1.61374 1.27730 1.10398 1.24506 1.21862 0.91244 1.00417 0.95237 1.19651 0.86066 0.85108 0.85381 1.90521 1.20274 1.58151 1.75160 1.42226 1.08239 1.48344 1.24268 1.19415 0.98352 1.26242 0.99250 0.86267 1.25042 0.98375 0.97027 0.95754 1.69617 1.33532 1.35849 1.13132 0.86680 0.84995 0.79001 0.78754 1.19682 1.20184 1.19482 1.22101 0.96144 0.95963 0.93019 1.21404 0.96759 0.94948 1.00159 0.91529 0.91965 0.92215 0.89568 0.89439 0.89814 0.89077 0.89533 0.90154 0.91649 0.89841 0.87536 0.95997 0.89203 0.93456 0.79742 0.91617 0.90515 0.95149 0.89893 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.83 37.16 0.37 -0.60 16 2 C -0.14 -1.16 5.41 -26.73 -0.14 -1.31 16 3 C 0.09 0.81 3.72 -27.88 -0.10 0.70 16 4 H 0.10 0.64 7.37 -51.93 -0.38 0.26 16 5 F -0.19 -2.05 16.75 2.25 0.04 -2.01 16 6 C 0.52 6.20 7.42 -10.99 -0.08 6.12 16 7 O -0.52 -8.28 17.38 5.56 0.10 -8.19 16 8 N -0.64 -6.37 3.48 -185.35 -0.65 -7.02 16 9 C 0.10 0.73 7.25 -8.34 -0.06 0.67 16 10 C -0.09 -0.79 0.85 -155.21 -0.13 -0.92 16 11 C 0.11 1.04 7.67 -8.19 -0.06 0.97 16 12 C -0.08 -0.96 5.27 -26.81 -0.14 -1.10 16 13 C 0.05 0.78 5.09 -3.73 -0.02 0.76 16 14 N -0.52 -7.39 4.35 -235.86 -1.03 -8.42 16 15 C 0.04 0.69 5.45 -4.98 -0.03 0.66 16 16 C 0.45 9.83 7.44 -10.99 -0.08 9.74 16 17 O -0.56 -14.20 13.89 5.55 0.08 -14.13 16 18 N -0.59 -13.69 5.09 -10.96 -0.06 -13.75 16 19 C -0.30 -8.42 10.16 -14.93 -0.15 -8.57 16 20 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 21 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 22 N -0.88 -25.46 13.96 55.50 0.77 -24.69 16 23 Si 0.88 19.08 27.74 -169.99 -4.71 14.37 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 27 C 0.06 0.57 5.45 -3.73 -0.02 0.55 16 28 C -0.09 -0.75 5.35 -26.81 -0.14 -0.90 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.41 7.94 -51.93 -0.41 0.00 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.83 8.05 -51.93 -0.42 0.41 16 34 H 0.08 0.49 7.82 -51.93 -0.41 0.09 16 35 H 0.09 0.49 8.10 -51.93 -0.42 0.06 16 36 H 0.09 0.69 8.01 -51.92 -0.42 0.27 16 37 H 0.08 0.88 7.78 -51.93 -0.40 0.48 16 38 H 0.06 0.76 7.95 -51.93 -0.41 0.34 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.11 1.97 5.73 -51.93 -0.30 1.67 16 41 H 0.02 0.30 7.81 -51.93 -0.41 -0.10 16 42 H 0.09 1.23 7.96 -51.93 -0.41 0.82 16 43 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 44 H 0.37 7.53 5.76 -40.82 -0.24 7.30 16 45 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.08 0.71 7.97 -51.93 -0.41 0.30 16 47 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.07 0.41 8.02 -51.93 -0.42 0.00 16 LS Contribution 394.18 15.07 5.94 5.94 Total: -1.00 -34.34 394.18 -8.39 -42.73 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -7.97 Total: 7.37 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -0.90 Total: 7.79 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.95 Total: -53.88 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: 0.17 Total: -22.32 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.37 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.34 -8.39 -42.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754960350.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.312 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds