Wall clock time and date at job start Wed Apr 1 2020 01:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46846 * 2 1 4 4 H 1.09002 * 109.47398 * 305.00335 * 3 2 1 5 5 F 1.39904 * 109.47059 * 65.00612 * 3 2 1 6 6 C 1.50703 * 109.46912 * 185.00257 * 3 2 1 7 7 O 1.21283 * 119.99734 * 315.00056 * 6 3 2 8 8 N 1.34774 * 120.00206 * 135.00569 * 6 3 2 9 9 C 1.47180 * 135.99038 * 359.62378 * 8 6 3 10 10 C 1.52571 * 87.95376 * 206.67081 * 9 8 6 11 11 C 1.47172 * 135.99679 * 180.02562 * 8 6 3 12 12 C 1.52590 * 114.00283 * 88.36943 * 10 9 8 13 13 C 1.53253 * 109.01332 * 186.32672 * 12 10 9 14 14 N 1.46839 * 109.41917 * 303.39019 * 13 12 10 15 15 C 1.46901 * 110.99390 * 187.90454 * 14 13 12 16 16 C 1.50696 * 109.47619 * 65.42596 * 15 14 13 17 17 O 1.21293 * 119.99828 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00426 * 179.97438 * 16 15 14 19 19 C 1.37096 * 120.00036 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00171 * 0.02562 * 19 18 16 21 21 C 1.38951 * 120.00019 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00416 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99852 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47047 * 89.99707 * 23 21 19 25 25 H 1.48499 * 109.47153 * 209.99640 * 23 21 19 26 26 H 1.48502 * 109.47069 * 329.99768 * 23 21 19 27 27 C 1.46831 * 111.47975 * 63.60500 * 14 13 12 28 28 C 1.52594 * 114.36568 * 220.64940 * 10 9 8 29 29 H 1.08996 * 109.46751 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46824 * 299.99583 * 1 2 3 31 31 H 1.09001 * 109.47241 * 59.99481 * 1 2 3 32 32 H 1.09002 * 109.46824 * 240.00417 * 2 1 3 33 33 H 1.08991 * 109.47210 * 120.00501 * 2 1 3 34 34 H 1.09001 * 113.49359 * 321.36350 * 9 8 6 35 35 H 1.09003 * 113.49075 * 91.86897 * 9 8 6 36 36 H 1.09009 * 113.48669 * 268.12684 * 11 8 6 37 37 H 1.08995 * 113.49427 * 38.57477 * 11 8 6 38 38 H 1.08999 * 109.54550 * 306.18764 * 12 10 9 39 39 H 1.08994 * 109.54779 * 66.46996 * 12 10 9 40 40 H 1.08992 * 109.47766 * 183.40215 * 13 12 10 41 41 H 1.08999 * 109.47496 * 63.37479 * 13 12 10 42 42 H 1.09002 * 109.46820 * 185.43038 * 15 14 13 43 43 H 1.09004 * 109.47119 * 305.42718 * 15 14 13 44 44 H 0.96997 * 119.99663 * 0.02562 * 18 16 15 45 45 H 0.96999 * 120.00321 * 180.02562 * 22 21 19 46 46 H 1.08995 * 109.48060 * 176.40837 * 27 14 13 47 47 H 1.09002 * 109.49406 * 56.37649 * 27 14 13 48 48 H 1.09001 * 109.54970 * 293.70535 * 28 10 9 49 49 H 1.08995 * 109.54741 * 53.89172 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 9 1.6700 2.0679 1.1955 6 6 3.5419 1.4443 -0.1239 7 8 4.2064 0.6811 0.5445 8 7 4.1467 2.2942 -0.9774 9 6 3.7095 3.3279 -1.9294 10 6 4.9883 3.0643 -2.7187 11 6 5.5334 2.5906 -1.3713 12 6 4.8567 1.9592 -3.7627 13 6 6.2351 1.6817 -4.3724 14 7 6.7791 2.9240 -4.9353 15 6 8.0109 2.6638 -5.6921 16 6 7.6908 1.8184 -6.8978 17 8 6.5486 1.4676 -7.1065 18 7 8.6733 1.4530 -7.7448 19 6 8.3819 0.6844 -8.8420 20 1 7.3649 0.3720 -9.0278 21 6 9.3950 0.3072 -9.7150 22 7 9.1156 -0.4291 -10.7670 23 14 11.1542 0.8469 -9.3932 24 1 11.8382 -0.1696 -8.5541 25 1 11.8730 0.9873 -10.6850 26 1 11.1498 2.1520 -8.6847 27 6 7.0052 3.9329 -3.8927 28 6 5.6645 4.3208 -3.2596 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.8028 3.0624 -2.4731 35 1 3.6645 4.3269 -1.4957 36 1 5.9913 3.3864 -0.7837 37 1 6.1634 1.7041 -1.4438 38 1 4.4783 1.0534 -3.2891 39 1 4.1689 2.2776 -4.5460 40 1 6.1399 0.9361 -5.1616 41 1 6.9062 1.3087 -3.5987 42 1 8.4448 3.6097 -6.0163 43 1 8.7228 2.1362 -5.0572 44 1 9.5866 1.7339 -7.5781 45 1 9.8229 -0.6927 -11.3762 46 1 7.4671 4.8155 -4.3350 47 1 7.6637 3.5232 -3.1268 48 1 5.0260 4.7834 -4.0123 49 1 5.8344 5.0234 -2.4439 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754960350.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:34 Heat of formation + Delta-G solvation = -100.645022 kcal Electronic energy + Delta-G solvation = -30296.254493 eV Core-core repulsion = 25980.041723 eV Total energy + Delta-G solvation = -4316.212770 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.02339 -42.20022 -40.50885 -39.68323 -37.91267 -35.92563 -35.01852 -33.79132 -33.43322 -31.86910 -30.33941 -28.78078 -27.40157 -26.91872 -25.60140 -24.30982 -23.13746 -22.53038 -21.24339 -20.65680 -20.18956 -19.24865 -18.68480 -17.93155 -17.70026 -17.35972 -16.87667 -16.66319 -16.50254 -16.29495 -16.24361 -15.51399 -15.42599 -15.16461 -15.03554 -14.89847 -14.75431 -14.43869 -14.18272 -13.98713 -13.78712 -13.76786 -13.53519 -13.34826 -13.18910 -13.02431 -12.84820 -12.81587 -12.49638 -12.40292 -12.09844 -12.06378 -11.97255 -11.93191 -11.69545 -11.53190 -11.34818 -11.26616 -10.79144 -10.30034 -10.20138 -9.88270 -9.12310 -8.39894 -6.00074 1.19167 1.30331 1.35789 1.44606 1.55422 1.99216 2.23688 2.67107 2.98841 3.16387 3.16714 3.30486 3.38675 3.57481 3.68818 3.81097 3.83353 4.02554 4.14535 4.25120 4.28654 4.32948 4.37784 4.42804 4.44675 4.50371 4.53287 4.58381 4.63608 4.65876 4.71327 4.72250 4.79907 4.92052 4.98770 5.06426 5.07867 5.13619 5.22007 5.27072 5.28757 5.43191 5.55288 5.93495 6.08327 6.32796 6.49518 6.62175 6.78216 6.91031 7.42787 8.00494 8.77766 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.020022 B = 0.002148 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.150165 B =13030.785029 C =13713.651007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.092 3.908 4 H 0.133 0.867 5 F -0.200 7.200 6 C 0.511 3.489 7 O -0.576 6.576 8 N -0.641 5.641 9 C 0.110 3.890 10 C -0.084 4.084 11 C 0.105 3.895 12 C -0.076 4.076 13 C 0.058 3.942 14 N -0.533 5.533 15 C 0.054 3.946 16 C 0.451 3.549 17 O -0.603 6.603 18 N -0.595 5.595 19 C -0.324 4.324 20 H 0.055 0.945 21 C -0.018 4.018 22 N -0.936 5.936 23 Si 0.964 3.036 24 H -0.260 1.260 25 H -0.276 1.276 26 H -0.229 1.229 27 C 0.052 3.948 28 C -0.087 4.087 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.026 0.974 42 H 0.123 0.877 43 H 0.071 0.929 44 H 0.388 0.612 45 H 0.278 0.722 46 H 0.094 0.906 47 H 0.041 0.959 48 H 0.083 0.917 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.018 13.526 22.525 27.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.053 3.947 4 H 0.151 0.849 5 F -0.180 7.180 6 C 0.299 3.701 7 O -0.455 6.455 8 N -0.375 5.375 9 C -0.011 4.011 10 C -0.085 4.085 11 C -0.017 4.017 12 C -0.114 4.114 13 C -0.070 4.070 14 N -0.258 5.258 15 C -0.077 4.077 16 C 0.239 3.761 17 O -0.487 6.487 18 N -0.237 5.237 19 C -0.453 4.453 20 H 0.074 0.926 21 C -0.216 4.216 22 N -0.577 5.577 23 Si 0.784 3.216 24 H -0.185 1.185 25 H -0.201 1.201 26 H -0.152 1.152 27 C -0.075 4.075 28 C -0.125 4.125 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.142 0.858 36 H 0.130 0.870 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.141 0.859 43 H 0.089 0.911 44 H 0.224 0.776 45 H 0.088 0.912 46 H 0.113 0.887 47 H 0.059 0.941 48 H 0.101 0.899 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.852 12.849 22.429 27.662 hybrid contribution 1.687 -0.996 0.089 1.961 sum -8.165 11.853 22.518 26.725 Atomic orbital electron populations 1.21759 0.92207 1.03489 1.03104 1.22013 0.98854 0.92888 1.04295 1.21699 0.89771 0.97208 0.86013 0.84938 1.92856 1.91862 1.84131 1.49196 1.21082 0.91118 0.79787 0.78121 1.90713 1.67518 1.41755 1.45553 1.49846 1.11462 1.36117 1.40043 1.23393 0.98763 0.92324 0.86667 1.21657 0.96931 0.97217 0.92658 1.23295 0.84430 1.00497 0.93445 1.21104 0.96337 0.97153 0.96835 1.22062 0.96033 0.92011 0.96876 1.61365 1.27323 1.10759 1.26385 1.21811 0.92510 1.00648 0.92721 1.20962 0.85040 0.83960 0.86161 1.90512 1.22410 1.59388 1.76374 1.42071 1.09590 1.48536 1.23513 1.18979 0.96168 1.28339 1.01830 0.92649 1.26109 1.04315 0.96428 0.94730 1.69804 1.35780 1.37487 1.14629 0.85381 0.76615 0.80474 0.79153 1.18478 1.20105 1.15240 1.22297 0.97944 0.95044 0.92222 1.21432 0.95299 0.94682 1.01123 0.90915 0.92155 0.90732 0.89541 0.91425 0.88293 0.85777 0.87048 0.92474 0.92529 0.90893 0.92648 0.95625 0.85908 0.91104 0.77619 0.91248 0.88741 0.94083 0.89876 0.87505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.83 71.98 0.71 -0.98 16 2 C -0.14 -2.30 5.41 30.60 0.17 -2.14 16 3 C 0.09 1.55 3.72 29.85 0.11 1.66 16 4 H 0.13 1.31 7.37 -2.39 -0.02 1.30 16 5 F -0.20 -4.05 16.75 44.97 0.75 -3.30 16 6 C 0.51 11.87 7.42 87.66 0.65 12.52 16 7 O -0.58 -18.80 17.38 -3.04 -0.05 -18.85 16 8 N -0.64 -11.50 3.48 -858.72 -2.99 -14.50 16 9 C 0.11 1.12 7.25 83.23 0.60 1.73 16 10 C -0.08 -1.21 0.85 -52.64 -0.04 -1.26 16 11 C 0.11 1.74 7.67 83.33 0.64 2.38 16 12 C -0.08 -1.73 5.27 30.54 0.16 -1.57 16 13 C 0.06 1.70 5.09 86.40 0.44 2.14 16 14 N -0.53 -14.32 4.35 -900.12 -3.92 -18.24 16 15 C 0.05 1.58 5.45 85.56 0.47 2.05 16 16 C 0.45 19.82 7.44 87.66 0.65 20.47 16 17 O -0.60 -32.34 13.89 -3.07 -0.04 -32.39 16 18 N -0.59 -27.66 5.09 -306.99 -1.56 -29.22 16 19 C -0.32 -18.83 10.16 84.04 0.85 -17.97 16 20 H 0.06 3.84 7.39 -2.91 -0.02 3.82 16 21 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 22 N -0.94 -56.44 13.96 21.66 0.30 -56.14 16 23 Si 0.96 38.60 27.74 68.60 1.90 40.50 16 24 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 25 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 26 H -0.23 -7.63 6.52 99.48 0.65 -6.98 16 27 C 0.05 0.85 5.45 86.40 0.47 1.32 16 28 C -0.09 -1.00 5.35 30.54 0.16 -0.84 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.72 7.94 -2.39 -0.02 0.70 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.35 8.05 -2.39 -0.02 1.33 16 34 H 0.10 0.77 7.82 -2.39 -0.02 0.76 16 35 H 0.12 0.60 8.10 -2.39 -0.02 0.58 16 36 H 0.11 1.33 8.01 -2.38 -0.02 1.31 16 37 H 0.06 1.22 7.78 -2.39 -0.02 1.20 16 38 H 0.06 1.35 7.95 -2.39 -0.02 1.33 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.06 2.19 5.73 -2.39 -0.01 2.18 16 41 H 0.03 0.71 7.81 -2.39 -0.02 0.69 16 42 H 0.12 2.83 7.96 -2.39 -0.02 2.81 16 43 H 0.07 1.78 8.13 -2.39 -0.02 1.76 16 44 H 0.39 14.93 5.76 -92.71 -0.53 14.40 16 45 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 46 H 0.09 1.26 7.97 -2.39 -0.02 1.24 16 47 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.11 0.56 8.02 -2.39 -0.02 0.54 16 Total: -1.00 -84.35 394.18 1.26 -83.09 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.36 Total: 30.03 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: 6.51 Total: 19.01 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -8.17 Total: -118.09 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -0.10 Total: -51.24 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.75 Total: -3.30 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 1.90 Total: 40.50 kcal Total: -84.35 1.26 -83.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754960350.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.552 kcal (2) G-P(sol) polarization free energy of solvation -84.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds