Wall clock time and date at job start Wed Apr 1 2020 00:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34232 * 126.50540 * 2 1 4 4 N 1.36831 * 109.93516 * 179.97438 * 3 2 1 5 5 C 1.46497 * 125.06695 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47119 * 264.97840 * 5 4 3 7 7 O 1.21281 * 120.00051 * 359.97438 * 6 5 4 8 8 N 1.34769 * 119.99755 * 180.02562 * 6 5 4 9 9 C 1.46508 * 119.99907 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47209 * 180.19611 * 9 8 6 11 11 N 1.46493 * 112.84791 * 292.10067 * 10 9 8 12 12 C 1.36940 * 120.00244 * 294.86704 * 11 10 9 13 13 H 1.08004 * 119.99588 * 353.76861 * 12 11 10 14 14 C 1.38808 * 120.00047 * 173.77233 * 12 11 10 15 15 N 1.31620 * 120.00205 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99772 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46960 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47115 * 119.99679 * 16 14 12 19 19 H 1.48494 * 109.47122 * 239.99812 * 16 14 12 20 20 C 1.53780 * 113.61163 * 160.79422 * 10 9 8 21 21 C 1.53785 * 87.08179 * 220.01739 * 20 10 9 22 22 C 1.53782 * 113.61334 * 63.29752 * 10 9 8 23 23 C 1.37689 * 109.86726 * 0.02562 * 4 3 2 24 24 C 1.39130 * 133.50135 * 180.02562 * 23 4 3 25 25 C 1.37750 * 119.77773 * 179.97438 * 24 23 4 26 26 C 1.38833 * 120.66323 * 359.97438 * 25 24 23 27 27 C 1.36617 * 120.53115 * 0.02562 * 26 25 24 28 28 C 1.39637 * 119.76383 * 359.69492 * 27 26 25 29 29 H 1.09009 * 109.47097 * 90.01821 * 1 2 3 30 30 H 1.08999 * 109.46834 * 330.02605 * 1 2 3 31 31 H 1.08999 * 109.47614 * 210.01715 * 1 2 3 32 32 H 1.08005 * 125.03675 * 0.02562 * 3 2 1 33 33 H 1.08992 * 109.46930 * 24.97610 * 5 4 3 34 34 H 1.09000 * 109.47242 * 144.97900 * 5 4 3 35 35 H 0.97001 * 120.00476 * 359.97438 * 8 6 5 36 36 H 1.09004 * 109.46557 * 300.19438 * 9 8 6 37 37 H 1.08994 * 109.46976 * 60.19045 * 9 8 6 38 38 H 0.97003 * 120.00270 * 114.86819 * 11 10 9 39 39 H 0.97001 * 119.99652 * 180.02562 * 15 14 12 40 40 H 1.09000 * 113.61414 * 334.56388 * 20 10 9 41 41 H 1.09002 * 113.61234 * 105.47465 * 20 10 9 42 42 H 1.08998 * 113.61243 * 270.89172 * 21 20 10 43 43 H 1.08998 * 113.61517 * 139.98110 * 21 20 10 44 44 H 1.09001 * 113.61405 * 254.52645 * 22 10 9 45 45 H 1.08994 * 113.61601 * 25.42891 * 22 10 9 46 46 H 1.08005 * 120.11074 * 359.97438 * 24 23 4 47 47 H 1.08004 * 119.66499 * 179.97438 * 25 24 23 48 48 H 1.08000 * 119.73353 * 179.97438 * 26 25 24 49 49 H 1.07998 * 120.12043 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0790 0.0000 4 7 3.6170 0.6887 0.0006 5 6 4.7657 1.5979 0.0013 6 6 5.2375 1.8124 -1.4139 7 8 4.6703 1.2598 -2.3325 8 7 6.2902 2.6175 -1.6584 9 6 6.7485 2.8265 -3.0342 10 6 7.9517 3.7716 -3.0329 11 7 7.6020 5.1371 -2.6340 12 6 6.7673 5.8872 -3.4187 13 1 6.4473 5.5118 -4.3795 14 6 6.3325 7.1301 -2.9794 15 7 6.7221 7.5875 -1.8083 16 14 5.1944 8.1536 -4.0503 17 1 4.9073 7.4204 -5.3093 18 1 3.9244 8.4057 -3.3231 19 1 5.8473 9.4485 -4.3699 20 6 8.7928 3.6996 -4.3183 21 6 10.0347 3.8114 -3.4182 22 6 9.1767 3.2083 -2.2934 23 6 3.6962 -0.6859 0.0004 24 6 4.7588 -1.5840 0.0012 25 6 4.5095 -2.9387 0.0013 26 6 3.2069 -3.4190 0.0010 27 6 2.1486 -2.5549 0.0002 28 6 2.3783 -1.1776 0.0061 29 1 -0.3634 -0.0003 -1.0277 30 1 -0.3633 0.8902 0.5134 31 1 -0.3634 -0.8898 0.5141 32 1 1.9636 2.1034 0.0004 33 1 4.4722 2.5537 0.4352 34 1 5.5726 1.1635 0.5914 35 1 6.7441 3.0592 -0.9237 36 1 7.0381 1.8702 -3.4698 37 1 5.9427 3.2648 -3.6229 38 1 7.9617 5.5100 -1.8139 39 1 6.4179 8.4558 -1.5012 40 1 8.7149 2.7448 -4.8382 41 1 8.6543 4.5552 -4.9792 42 1 10.3448 4.8388 -3.2277 43 1 10.8592 3.1702 -3.7300 44 1 9.3480 3.6673 -1.3197 45 1 9.2037 2.1193 -2.2597 46 1 5.7757 -1.2202 0.0018 47 1 5.3358 -3.6343 0.0015 48 1 3.0287 -4.4842 0.0006 49 1 1.1380 -2.9357 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754988794.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:05 Heat of formation + Delta-G solvation = 57.970077 kcal Electronic energy + Delta-G solvation = -29414.729706 eV Core-core repulsion = 25536.164228 eV Total energy + Delta-G solvation = -3878.565479 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.42520 -39.56491 -38.49379 -36.93784 -34.03159 -33.74045 -33.34572 -30.62777 -30.10504 -29.83785 -28.68588 -27.14074 -25.38247 -25.12497 -23.83918 -22.70950 -21.93861 -21.38856 -20.23968 -19.51914 -18.35728 -17.35526 -17.12669 -16.90436 -16.58067 -15.53080 -15.43523 -15.18883 -14.90630 -14.72771 -14.30495 -14.03137 -13.89749 -13.80097 -13.41044 -13.27946 -13.14406 -12.98112 -12.75638 -12.61780 -12.32642 -12.12571 -11.96043 -11.77236 -11.49920 -11.38200 -11.31743 -11.08684 -10.92226 -10.78527 -10.43076 -10.29216 -10.17501 -9.82878 -9.76404 -9.55327 -9.41883 -8.96787 -8.64124 -8.12028 -7.50911 -7.12613 -5.90883 -3.20847 1.16234 1.65707 2.55535 2.77687 2.79447 3.35291 3.43160 3.44026 3.53770 3.96319 4.46736 4.62320 4.66488 4.78341 4.87290 4.96568 4.99291 5.10408 5.11997 5.18793 5.22343 5.29818 5.34475 5.35814 5.45548 5.53952 5.69967 5.70274 5.72558 5.77675 5.89100 5.94903 5.98781 6.05016 6.12118 6.18654 6.25046 6.30886 6.44738 6.50292 6.62352 6.62981 6.77919 6.79392 6.85444 6.88391 6.96739 7.24670 7.28849 7.63103 7.80040 8.27944 8.44603 9.39532 9.92305 10.27627 11.31055 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012276 B = 0.002927 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.289258 B = 9563.863299 C =11230.972234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.179 4.179 3 C 0.064 3.936 4 N -0.464 5.464 5 C 0.090 3.910 6 C 0.488 3.512 7 O -0.532 6.532 8 N -0.701 5.701 9 C 0.122 3.878 10 C 0.174 3.826 11 N -0.700 5.700 12 C -0.236 4.236 13 H 0.071 0.929 14 C -0.008 4.008 15 N -0.931 5.931 16 Si 0.904 3.096 17 H -0.279 1.279 18 H -0.291 1.291 19 H -0.291 1.291 20 C -0.151 4.151 21 C -0.128 4.128 22 C -0.144 4.144 23 C 0.112 3.888 24 C -0.124 4.124 25 C -0.104 4.104 26 C -0.152 4.152 27 C -0.072 4.072 28 C -0.102 4.102 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.166 0.834 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.401 0.599 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.115 0.885 47 H 0.121 0.879 48 H 0.118 0.882 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.963 -17.128 7.075 18.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.186 4.186 3 C -0.061 4.061 4 N -0.146 5.146 5 C -0.036 4.036 6 C 0.271 3.729 7 O -0.409 6.409 8 N -0.351 5.351 9 C -0.004 4.004 10 C 0.081 3.919 11 N -0.340 5.340 12 C -0.367 4.367 13 H 0.089 0.911 14 C -0.204 4.204 15 N -0.579 5.579 16 Si 0.735 3.265 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C -0.191 4.191 21 C -0.166 4.166 22 C -0.182 4.182 23 C 0.006 3.994 24 C -0.145 4.145 25 C -0.123 4.123 26 C -0.171 4.171 27 C -0.091 4.091 28 C -0.107 4.107 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.183 0.817 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.235 0.765 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.221 0.779 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.133 0.867 47 H 0.139 0.861 48 H 0.136 0.864 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.246 -17.170 6.290 18.571 hybrid contribution -0.159 1.261 -0.082 1.273 sum -3.405 -15.909 6.208 17.413 Atomic orbital electron populations 1.20051 0.89561 1.01852 1.01568 1.20196 0.95088 0.90719 1.12583 1.21596 0.81552 0.99309 1.03622 1.43308 1.05071 1.03672 1.62518 1.21623 0.89565 0.96049 0.96362 1.20768 0.80994 0.80121 0.91042 1.90747 1.55765 1.48784 1.45583 1.45727 1.31759 1.47032 1.10607 1.21884 0.98735 0.98043 0.81776 1.20810 0.89535 0.86751 0.94816 1.42072 1.56347 1.08122 1.27474 1.19143 1.20446 0.97992 0.99075 0.91108 1.24721 1.00612 0.98176 0.96920 1.69659 1.48768 1.19954 1.19471 0.86167 0.80451 0.80256 0.79640 1.20465 1.21843 1.21827 1.23314 0.96727 1.01277 0.97800 1.22632 0.95988 1.00954 0.96996 1.23146 0.97131 0.99633 0.98327 1.18175 0.95469 0.82625 1.03094 1.20001 0.96499 0.92286 1.05674 1.20736 0.96901 0.94019 1.00649 1.20552 0.92498 0.99219 1.04849 1.20193 0.98851 0.90877 0.99142 1.19064 0.91867 0.93180 1.06584 0.92011 0.92025 0.92103 0.81662 0.86096 0.87006 0.76491 0.92740 0.91274 0.77921 0.93510 0.91314 0.90690 0.89999 0.92688 0.91641 0.90474 0.86733 0.86061 0.86365 0.86414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.41 36.00 0.37 -0.36 16 2 C -0.18 -2.38 6.32 -102.71 -0.65 -3.03 16 3 C 0.06 0.86 11.19 -16.73 -0.19 0.67 16 4 N -0.46 -6.50 2.27 -115.71 -0.26 -6.76 16 5 C 0.09 1.09 6.48 -5.19 -0.03 1.05 16 6 C 0.49 7.82 7.90 -10.99 -0.09 7.73 16 7 O -0.53 -10.88 16.42 5.56 0.09 -10.79 16 8 N -0.70 -10.92 5.42 -60.29 -0.33 -11.25 16 9 C 0.12 2.15 5.08 -4.04 -0.02 2.13 16 10 C 0.17 3.05 0.80 -131.01 -0.11 2.95 16 11 N -0.70 -15.41 5.19 -46.48 -0.24 -15.65 16 12 C -0.24 -6.02 9.05 -15.06 -0.14 -6.16 16 13 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 14 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 15 N -0.93 -26.21 13.07 55.49 0.73 -25.48 16 16 Si 0.90 21.74 29.55 -169.99 -5.02 16.71 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 20 C -0.15 -2.50 7.28 -25.92 -0.19 -2.69 16 21 C -0.13 -1.91 7.99 -25.91 -0.21 -2.12 16 22 C -0.14 -2.08 7.04 -25.91 -0.18 -2.26 16 23 C 0.11 1.65 6.80 -83.99 -0.57 1.08 16 24 C -0.12 -1.63 10.00 -39.43 -0.39 -2.02 16 25 C -0.10 -1.19 10.01 -39.54 -0.40 -1.59 16 26 C -0.15 -1.70 9.97 -39.95 -0.40 -2.10 16 27 C -0.07 -0.88 10.05 -39.65 -0.40 -1.28 16 28 C -0.10 -1.46 6.35 -105.14 -0.67 -2.13 16 29 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.17 1.84 8.06 -52.48 -0.42 1.42 16 33 H 0.12 1.22 8.12 -51.93 -0.42 0.80 16 34 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.40 5.60 8.30 -40.82 -0.34 5.26 16 36 H 0.05 0.92 8.01 -51.93 -0.42 0.51 16 37 H 0.07 1.46 7.80 -51.93 -0.41 1.05 16 38 H 0.39 9.06 7.87 -40.82 -0.32 8.74 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 40 H 0.07 1.02 8.01 -51.93 -0.42 0.60 16 41 H 0.07 1.40 7.87 -51.93 -0.41 0.99 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 45 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 46 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 47 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 48 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 49 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 408.93 15.07 6.16 6.16 Total: -1.00 -32.39 408.93 -10.98 -43.37 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -7.77 Total: 14.11 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -4.34 Total: -10.43 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -0.11 Total: -59.14 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.39 -10.98 -43.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754988794.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.345 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds