Wall clock time and date at job start Wed Apr 1 2020 00:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34232 * 126.50540 * 2 1 4 4 N 1.36831 * 109.93516 * 179.97438 * 3 2 1 5 5 C 1.46497 * 125.06695 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47119 * 264.97840 * 5 4 3 7 7 O 1.21281 * 120.00051 * 359.97438 * 6 5 4 8 8 N 1.34769 * 119.99755 * 180.02562 * 6 5 4 9 9 C 1.46508 * 119.99907 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47209 * 180.19611 * 9 8 6 11 11 N 1.46493 * 112.84791 * 292.10067 * 10 9 8 12 12 C 1.36940 * 120.00244 * 294.86704 * 11 10 9 13 13 H 1.08004 * 119.99588 * 353.76861 * 12 11 10 14 14 C 1.38808 * 120.00047 * 173.77233 * 12 11 10 15 15 N 1.31620 * 120.00205 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99772 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46960 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47115 * 119.99679 * 16 14 12 19 19 H 1.48494 * 109.47122 * 239.99812 * 16 14 12 20 20 C 1.53780 * 113.61163 * 160.79422 * 10 9 8 21 21 C 1.53785 * 87.08179 * 220.01739 * 20 10 9 22 22 C 1.53782 * 113.61334 * 63.29752 * 10 9 8 23 23 C 1.37689 * 109.86726 * 0.02562 * 4 3 2 24 24 C 1.39130 * 133.50135 * 180.02562 * 23 4 3 25 25 C 1.37750 * 119.77773 * 179.97438 * 24 23 4 26 26 C 1.38833 * 120.66323 * 359.97438 * 25 24 23 27 27 C 1.36617 * 120.53115 * 0.02562 * 26 25 24 28 28 C 1.39637 * 119.76383 * 359.69492 * 27 26 25 29 29 H 1.09009 * 109.47097 * 90.01821 * 1 2 3 30 30 H 1.08999 * 109.46834 * 330.02605 * 1 2 3 31 31 H 1.08999 * 109.47614 * 210.01715 * 1 2 3 32 32 H 1.08005 * 125.03675 * 0.02562 * 3 2 1 33 33 H 1.08992 * 109.46930 * 24.97610 * 5 4 3 34 34 H 1.09000 * 109.47242 * 144.97900 * 5 4 3 35 35 H 0.97001 * 120.00476 * 359.97438 * 8 6 5 36 36 H 1.09004 * 109.46557 * 300.19438 * 9 8 6 37 37 H 1.08994 * 109.46976 * 60.19045 * 9 8 6 38 38 H 0.97003 * 120.00270 * 114.86819 * 11 10 9 39 39 H 0.97001 * 119.99652 * 180.02562 * 15 14 12 40 40 H 1.09000 * 113.61414 * 334.56388 * 20 10 9 41 41 H 1.09002 * 113.61234 * 105.47465 * 20 10 9 42 42 H 1.08998 * 113.61243 * 270.89172 * 21 20 10 43 43 H 1.08998 * 113.61517 * 139.98110 * 21 20 10 44 44 H 1.09001 * 113.61405 * 254.52645 * 22 10 9 45 45 H 1.08994 * 113.61601 * 25.42891 * 22 10 9 46 46 H 1.08005 * 120.11074 * 359.97438 * 24 23 4 47 47 H 1.08004 * 119.66499 * 179.97438 * 25 24 23 48 48 H 1.08000 * 119.73353 * 179.97438 * 26 25 24 49 49 H 1.07998 * 120.12043 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0790 0.0000 4 7 3.6170 0.6887 0.0006 5 6 4.7657 1.5979 0.0013 6 6 5.2375 1.8124 -1.4139 7 8 4.6703 1.2598 -2.3325 8 7 6.2902 2.6175 -1.6584 9 6 6.7485 2.8265 -3.0342 10 6 7.9517 3.7716 -3.0329 11 7 7.6020 5.1371 -2.6340 12 6 6.7673 5.8872 -3.4187 13 1 6.4473 5.5118 -4.3795 14 6 6.3325 7.1301 -2.9794 15 7 6.7221 7.5875 -1.8083 16 14 5.1944 8.1536 -4.0503 17 1 4.9073 7.4204 -5.3093 18 1 3.9244 8.4057 -3.3231 19 1 5.8473 9.4485 -4.3699 20 6 8.7928 3.6996 -4.3183 21 6 10.0347 3.8114 -3.4182 22 6 9.1767 3.2083 -2.2934 23 6 3.6962 -0.6859 0.0004 24 6 4.7588 -1.5840 0.0012 25 6 4.5095 -2.9387 0.0013 26 6 3.2069 -3.4190 0.0010 27 6 2.1486 -2.5549 0.0002 28 6 2.3783 -1.1776 0.0061 29 1 -0.3634 -0.0003 -1.0277 30 1 -0.3633 0.8902 0.5134 31 1 -0.3634 -0.8898 0.5141 32 1 1.9636 2.1034 0.0004 33 1 4.4722 2.5537 0.4352 34 1 5.5726 1.1635 0.5914 35 1 6.7441 3.0592 -0.9237 36 1 7.0381 1.8702 -3.4698 37 1 5.9427 3.2648 -3.6229 38 1 7.9617 5.5100 -1.8139 39 1 6.4179 8.4558 -1.5012 40 1 8.7149 2.7448 -4.8382 41 1 8.6543 4.5552 -4.9792 42 1 10.3448 4.8388 -3.2277 43 1 10.8592 3.1702 -3.7300 44 1 9.3480 3.6673 -1.3197 45 1 9.2037 2.1193 -2.2597 46 1 5.7757 -1.2202 0.0018 47 1 5.3358 -3.6343 0.0015 48 1 3.0287 -4.4842 0.0006 49 1 1.1380 -2.9357 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754988794.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:04 Heat of formation + Delta-G solvation = 39.705773 kcal Electronic energy + Delta-G solvation = -29415.521706 eV Core-core repulsion = 25536.164228 eV Total energy + Delta-G solvation = -3879.357478 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.38710 -40.89964 -39.83196 -37.85809 -35.39606 -35.23132 -34.69848 -32.01110 -31.48193 -30.75852 -29.74317 -28.39043 -26.74933 -26.22660 -25.55376 -23.67947 -23.16887 -22.44294 -21.47584 -20.46096 -19.77491 -19.15412 -18.48259 -17.97984 -17.50543 -16.94204 -16.49217 -16.31965 -16.28317 -15.97719 -15.83259 -15.38955 -15.08630 -14.88392 -14.76604 -14.55910 -14.31350 -14.00474 -13.86865 -13.61419 -13.53558 -13.14133 -13.02722 -12.97006 -12.94543 -12.91791 -12.58319 -12.45238 -12.22367 -12.16895 -11.96700 -11.67164 -11.63197 -11.51262 -11.15103 -10.92820 -10.77813 -10.38330 -10.03968 -9.08267 -9.00734 -8.45285 -7.96942 -5.23356 0.23143 0.71997 1.41460 1.44859 1.51374 1.51844 1.57282 1.84803 2.35524 2.52113 3.02681 3.35068 3.66025 3.71308 3.74315 3.77228 3.81622 3.90229 3.97282 4.06878 4.09301 4.13831 4.20305 4.29967 4.45502 4.48462 4.60303 4.67133 4.80363 4.86383 4.87354 4.89166 4.89567 4.93360 4.98169 5.03056 5.11646 5.19121 5.27613 5.31916 5.40017 5.45760 5.60132 5.60925 5.68038 5.72518 5.89340 5.91867 6.27879 6.30247 6.33511 6.57148 7.19376 7.34566 8.07587 8.32012 9.25337 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012276 B = 0.002927 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.289258 B = 9563.863299 C =11230.972234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.190 4.190 3 C 0.041 3.959 4 N -0.471 5.471 5 C 0.095 3.905 6 C 0.487 3.513 7 O -0.581 6.581 8 N -0.694 5.694 9 C 0.132 3.868 10 C 0.161 3.839 11 N -0.704 5.704 12 C -0.221 4.221 13 H 0.062 0.938 14 C -0.063 4.063 15 N -0.959 5.959 16 Si 0.953 3.047 17 H -0.276 1.276 18 H -0.296 1.296 19 H -0.294 1.294 20 C -0.152 4.152 21 C -0.121 4.121 22 C -0.125 4.125 23 C 0.086 3.914 24 C -0.144 4.144 25 C -0.104 4.104 26 C -0.154 4.154 27 C -0.083 4.083 28 C -0.133 4.133 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.180 0.820 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.411 0.589 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.379 0.621 39 H 0.250 0.750 40 H 0.091 0.909 41 H 0.046 0.954 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.104 0.896 46 H 0.124 0.876 47 H 0.149 0.851 48 H 0.147 0.853 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.257 -19.236 7.813 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.197 4.197 3 C -0.083 4.083 4 N -0.154 5.154 5 C -0.030 4.030 6 C 0.273 3.727 7 O -0.461 6.461 8 N -0.345 5.345 9 C 0.005 3.995 10 C 0.069 3.931 11 N -0.343 5.343 12 C -0.353 4.353 13 H 0.080 0.920 14 C -0.256 4.256 15 N -0.609 5.609 16 Si 0.784 3.216 17 H -0.201 1.201 18 H -0.224 1.224 19 H -0.221 1.221 20 C -0.193 4.193 21 C -0.158 4.158 22 C -0.163 4.163 23 C -0.020 4.020 24 C -0.164 4.164 25 C -0.123 4.123 26 C -0.173 4.173 27 C -0.101 4.101 28 C -0.137 4.137 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.197 0.803 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.247 0.753 36 H 0.084 0.916 37 H 0.045 0.955 38 H 0.212 0.788 39 H 0.059 0.941 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.122 0.878 46 H 0.142 0.858 47 H 0.166 0.834 48 H 0.165 0.835 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.519 -19.303 7.027 20.696 hybrid contribution -0.360 1.773 -0.379 1.848 sum -2.879 -17.530 6.648 18.968 Atomic orbital electron populations 1.20101 0.87739 1.03094 1.01833 1.20645 0.96521 0.90546 1.11942 1.21994 0.81795 1.00218 1.04321 1.43448 1.05480 1.03770 1.62694 1.21759 0.90213 0.97247 0.93775 1.21472 0.80095 0.78878 0.92287 1.90722 1.57173 1.50657 1.47511 1.45672 1.31858 1.46875 1.10060 1.21642 0.97171 0.98095 0.82553 1.21081 0.90623 0.84688 0.96715 1.42090 1.55756 1.09750 1.26732 1.19282 1.19371 0.97927 0.98751 0.91959 1.25267 1.02645 0.99526 0.98130 1.69756 1.50387 1.20073 1.20720 0.85377 0.78803 0.78945 0.78490 1.20114 1.22356 1.22086 1.23351 0.97516 1.01276 0.97110 1.22562 0.96253 1.00601 0.96415 1.23093 0.93992 1.01059 0.98111 1.18574 0.96286 0.83196 1.03920 1.20290 0.96710 0.92963 1.06445 1.21151 0.98062 0.93919 0.99171 1.20954 0.92123 1.00629 1.03556 1.20530 1.00304 0.90389 0.98912 1.19495 0.92248 0.94367 1.07623 0.92107 0.90661 0.91007 0.80277 0.84009 0.83881 0.75309 0.91620 0.95486 0.78763 0.94124 0.89066 0.93554 0.91949 0.89686 0.91061 0.87754 0.85807 0.83360 0.83486 0.84620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.37 10.41 71.24 0.74 -0.63 16 2 C -0.19 -5.01 6.32 -18.63 -0.12 -5.13 16 3 C 0.04 1.10 11.19 83.00 0.93 2.02 16 4 N -0.47 -13.02 2.27 -520.01 -1.18 -14.20 16 5 C 0.10 2.19 6.48 85.64 0.56 2.74 16 6 C 0.49 15.38 7.90 87.66 0.69 16.08 16 7 O -0.58 -24.06 16.42 -3.03 -0.05 -24.11 16 8 N -0.69 -21.02 5.42 -463.05 -2.51 -23.53 16 9 C 0.13 4.62 5.08 86.38 0.44 5.06 16 10 C 0.16 5.48 0.80 4.13 0.00 5.48 16 11 N -0.70 -31.06 5.19 -300.97 -1.56 -32.62 16 12 C -0.22 -11.46 9.05 84.03 0.76 -10.70 16 13 H 0.06 3.29 7.83 -2.91 -0.02 3.27 16 14 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 15 N -0.96 -54.75 13.07 21.65 0.28 -54.46 16 16 Si 0.95 45.43 29.55 68.60 2.03 47.46 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 19 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 20 C -0.15 -4.87 7.28 31.12 0.23 -4.64 16 21 C -0.12 -3.31 7.99 31.12 0.25 -3.06 16 22 C -0.12 -3.24 7.04 31.12 0.22 -3.02 16 23 C 0.09 2.49 6.80 39.03 0.27 2.75 16 24 C -0.14 -3.60 10.00 22.37 0.22 -3.38 16 25 C -0.10 -2.18 10.01 22.30 0.22 -1.96 16 26 C -0.15 -3.11 9.97 22.03 0.22 -2.89 16 27 C -0.08 -1.93 10.05 22.23 0.22 -1.71 16 28 C -0.13 -3.75 6.35 -20.20 -0.13 -3.88 16 29 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.18 3.99 8.06 -2.91 -0.02 3.96 16 33 H 0.14 2.64 8.12 -2.39 -0.02 2.62 16 34 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.41 10.84 8.30 -92.71 -0.77 10.07 16 36 H 0.07 2.15 8.01 -2.39 -0.02 2.13 16 37 H 0.03 1.17 7.80 -2.39 -0.02 1.15 16 38 H 0.38 17.80 7.87 -92.71 -0.73 17.07 16 39 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 40 H 0.09 2.50 8.01 -2.39 -0.02 2.48 16 41 H 0.05 1.73 7.87 -2.39 -0.02 1.71 16 42 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.07 1.81 8.09 -2.39 -0.02 1.80 16 45 H 0.10 2.21 8.10 -2.39 -0.02 2.19 16 46 H 0.12 2.71 8.06 -2.91 -0.02 2.68 16 47 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 48 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 49 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -72.17 408.93 2.66 -69.51 By element: Atomic # 1 Polarization: 42.30 SS G_CDS: -0.54 Total: 41.76 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 6.19 Total: -9.81 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -4.97 Total: -124.82 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.05 Total: -24.11 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -72.17 2.66 -69.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754988794.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.219 kcal (2) G-P(sol) polarization free energy of solvation -72.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds