Wall clock time and date at job start Wed Apr 1 2020 01:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46637 * 2 1 4 4 C 1.52996 * 109.47302 * 239.99912 * 2 1 3 5 5 C 1.53000 * 109.46886 * 119.99695 * 2 1 3 6 6 H 1.09002 * 109.47398 * 300.00496 * 5 2 1 7 7 C 1.52997 * 109.47060 * 180.02562 * 5 2 1 8 8 N 1.46500 * 109.47520 * 185.00200 * 7 5 2 9 9 C 1.36935 * 120.00067 * 179.97438 * 8 7 5 10 10 H 1.07995 * 120.00414 * 0.02562 * 9 8 7 11 11 C 1.38818 * 119.99870 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99958 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 119.99988 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47275 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47167 * 120.00212 * 13 11 9 16 16 H 1.48504 * 109.46839 * 239.99626 * 13 11 9 17 17 N 1.46500 * 109.47023 * 60.00568 * 5 2 1 18 18 C 1.34779 * 119.99793 * 274.99565 * 17 5 2 19 19 O 1.21600 * 120.00336 * 0.02562 * 18 17 5 20 20 C 1.47440 * 119.99710 * 179.97438 * 18 17 5 21 21 C 1.38744 * 120.33198 * 0.02562 * 20 18 17 22 22 C 1.38866 * 120.72289 * 179.97438 * 21 20 18 23 23 C 1.36355 * 121.05594 * 359.97438 * 22 21 20 24 24 C 1.40435 * 120.08717 * 359.97438 * 23 22 21 25 25 C 1.40809 * 121.26299 * 180.02562 * 24 23 22 26 26 C 1.36640 * 118.14995 * 179.26595 * 25 24 23 27 27 C 1.39237 * 119.90632 * 0.70789 * 26 25 24 28 28 N 1.31231 * 121.69595 * 359.50317 * 27 26 25 29 29 C 1.33346 * 121.35229 * 0.02562 * 28 27 26 30 30 H 1.09002 * 109.47508 * 299.99876 * 1 2 3 31 31 H 1.09000 * 109.47437 * 60.00474 * 1 2 3 32 32 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46986 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47662 * 299.99908 * 3 2 1 35 35 H 1.09002 * 109.47075 * 60.00414 * 3 2 1 36 36 H 1.08992 * 109.47554 * 299.99692 * 4 2 1 37 37 H 1.09004 * 109.47108 * 59.99942 * 4 2 1 38 38 H 1.09000 * 109.46870 * 179.97438 * 4 2 1 39 39 H 1.09004 * 109.47346 * 305.00346 * 7 5 2 40 40 H 1.09002 * 109.47196 * 65.00121 * 7 5 2 41 41 H 0.96995 * 119.99638 * 359.97438 * 8 7 5 42 42 H 0.96992 * 120.00256 * 180.02562 * 12 11 9 43 43 H 0.97004 * 120.00223 * 94.99655 * 17 5 2 44 44 H 1.07999 * 119.63940 * 359.97438 * 21 20 18 45 45 H 1.07998 * 119.47059 * 180.02562 * 22 21 20 46 46 H 1.08008 * 119.95242 * 179.97438 * 23 22 21 47 47 H 1.07991 * 120.92725 * 359.96274 * 25 24 23 48 48 H 1.07994 * 120.04847 * 180.20954 * 26 25 24 49 49 H 1.08002 * 119.15039 * 179.52560 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 1.6765 -0.2074 2.1393 7 6 3.5699 -0.7207 1.2497 8 7 4.0584 -1.5128 2.3811 9 6 5.4047 -1.6563 2.5860 10 1 6.1065 -1.1852 1.9138 11 6 5.8674 -2.4074 3.6578 12 7 5.0122 -2.9821 4.4767 13 14 7.7039 -2.6025 3.9377 14 1 8.4464 -1.8645 2.8845 15 1 8.0621 -2.0566 5.2715 16 1 8.0633 -4.0423 3.8795 17 7 1.5517 -2.1024 1.2493 18 6 0.3297 -2.3852 1.7425 19 8 -0.3677 -1.4938 2.1872 20 6 -0.1619 -3.7752 1.7420 21 6 0.6279 -4.7975 1.2359 22 6 0.1732 -6.1096 1.2318 23 6 -1.0577 -6.4291 1.7239 24 6 -1.8892 -5.4252 2.2466 25 6 -3.1644 -5.7273 2.7616 26 6 -3.9141 -4.7035 3.2684 27 6 -3.4155 -3.4036 3.2515 28 7 -2.2281 -3.1268 2.7662 29 6 -1.4434 -4.0816 2.2654 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6768 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7208 -1.2493 39 1 3.9337 -1.1547 0.3183 40 1 3.9329 0.3032 1.3394 41 1 3.4281 -1.9357 2.9850 42 1 5.3355 -3.5066 5.2258 43 1 2.1079 -2.8135 0.8942 44 1 1.6070 -4.5704 0.8407 45 1 0.8049 -6.8897 0.8333 46 1 -1.3937 -7.4555 1.7116 47 1 -3.5351 -6.7416 2.7662 48 1 -4.8952 -4.9011 3.6742 49 1 -4.0215 -2.6025 3.6483 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755827153.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:36 Heat of formation + Delta-G solvation = 34.139694 kcal Electronic energy + Delta-G solvation = -30398.012396 eV Core-core repulsion = 26518.413554 eV Total energy + Delta-G solvation = -3879.598842 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.00181 -39.67718 -37.39854 -36.76890 -34.37895 -33.46582 -33.07415 -31.12230 -30.55814 -30.08785 -27.64061 -27.05693 -26.58937 -24.66597 -23.92624 -23.48384 -22.95179 -21.37138 -20.16759 -18.59327 -18.25866 -17.73165 -17.02965 -16.76173 -15.96268 -15.59973 -15.37607 -14.78405 -14.68023 -14.36877 -14.07336 -14.01656 -13.84065 -13.62770 -13.23372 -13.12455 -13.07896 -12.99859 -12.63697 -12.18955 -12.05159 -11.88146 -11.75611 -11.71517 -11.44271 -11.27997 -11.14845 -11.03168 -10.81781 -10.66699 -10.55232 -10.37761 -10.16380 -9.86109 -9.71797 -9.71411 -9.00906 -8.87700 -8.86573 -8.46679 -8.26023 -6.91878 -5.75826 -3.05319 0.12251 0.75281 1.72587 2.74754 3.42381 3.47809 3.48934 3.50704 3.56088 4.19326 4.26167 4.48304 4.58102 4.62868 4.73236 4.79014 4.95965 5.03061 5.03734 5.13920 5.20267 5.24762 5.38188 5.56132 5.57148 5.67190 5.78400 5.81500 5.84027 5.86494 5.94446 5.98444 6.00035 6.11829 6.12787 6.16461 6.20653 6.24239 6.26290 6.38704 6.39606 6.54450 6.54806 6.59367 6.70694 6.75470 6.82611 7.09568 7.70167 7.95426 8.06859 8.41892 8.75699 9.53694 10.11060 10.46403 11.46394 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009465 B = 0.003846 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.532523 B = 7277.995213 C = 9111.850150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.076 4.076 3 C -0.140 4.140 4 C -0.141 4.141 5 C 0.152 3.848 6 H 0.087 0.913 7 C 0.142 3.858 8 N -0.731 5.731 9 C -0.240 4.240 10 H 0.071 0.929 11 C -0.012 4.012 12 N -0.930 5.930 13 Si 0.905 3.095 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.292 1.292 17 N -0.708 5.708 18 C 0.553 3.447 19 O -0.501 6.501 20 C -0.101 4.101 21 C -0.060 4.060 22 C -0.120 4.120 23 C -0.079 4.079 24 C -0.112 4.112 25 C -0.061 4.061 26 C -0.178 4.178 27 C 0.126 3.874 28 N -0.432 5.432 29 C 0.162 3.838 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.028 0.972 40 H 0.035 0.965 41 H 0.386 0.614 42 H 0.254 0.746 43 H 0.399 0.601 44 H 0.137 0.863 45 H 0.134 0.866 46 H 0.132 0.868 47 H 0.137 0.863 48 H 0.135 0.865 49 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.722 -5.249 -9.675 20.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.198 4.198 5 C 0.047 3.953 6 H 0.105 0.895 7 C 0.014 3.986 8 N -0.376 5.376 9 C -0.371 4.371 10 H 0.088 0.912 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.736 3.264 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.360 5.360 18 C 0.339 3.661 19 O -0.376 6.376 20 C -0.105 4.105 21 C -0.080 4.080 22 C -0.138 4.138 23 C -0.098 4.098 24 C -0.114 4.114 25 C -0.087 4.087 26 C -0.198 4.198 27 C -0.046 4.046 28 N -0.138 5.138 29 C 0.039 3.961 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.220 0.780 42 H 0.064 0.936 43 H 0.234 0.766 44 H 0.155 0.845 45 H 0.152 0.848 46 H 0.150 0.850 47 H 0.155 0.845 48 H 0.153 0.847 49 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.620 -3.702 -9.412 19.455 hybrid contribution 0.824 -1.675 0.389 1.907 sum -15.796 -5.377 -9.022 18.969 Atomic orbital electron populations 1.21872 0.93955 1.01860 1.00842 1.20902 0.96145 0.95448 0.95281 1.21881 1.01472 0.94995 1.01443 1.21904 1.01399 1.00000 0.96488 1.21233 0.94817 0.81528 0.97686 0.89532 1.21100 0.89419 0.95939 0.92168 1.42382 1.04849 1.60286 1.30103 1.19253 0.83355 1.25887 1.08641 0.91151 1.24738 0.97474 1.00632 0.97973 1.69685 1.32414 1.38019 1.17699 0.86148 0.85312 0.77290 0.77611 1.20575 1.21915 1.21947 1.45860 1.16913 1.10215 1.63044 1.17766 0.81870 0.87582 0.78860 1.90823 1.55758 1.46691 1.44281 1.20032 0.93666 0.94675 1.02104 1.21551 0.98929 0.92316 0.95219 1.20864 0.96312 0.96476 1.00184 1.21117 0.93866 0.98485 0.96297 1.18827 0.96010 0.94379 1.02171 1.21425 0.92474 0.99881 0.94901 1.21931 1.01598 0.94339 1.01919 1.23159 0.92035 0.95565 0.93870 1.68330 1.03836 1.34348 1.07311 1.18619 0.93390 0.88424 0.95676 0.91919 0.94248 0.92887 0.91966 0.92991 0.92571 0.92962 0.93300 0.91963 0.95447 0.94751 0.78005 0.93597 0.76589 0.84482 0.84795 0.85048 0.84476 0.84684 0.82499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 6.99 37.16 0.26 -1.67 16 2 C -0.08 -1.10 0.62 -154.51 -0.10 -1.20 16 3 C -0.14 -1.87 8.12 37.16 0.30 -1.57 16 4 C -0.14 -1.82 7.97 37.16 0.30 -1.53 16 5 C 0.15 2.65 1.69 -67.93 -0.11 2.53 16 6 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 7 C 0.14 2.76 5.10 -4.04 -0.02 2.74 16 8 N -0.73 -18.16 5.43 -59.91 -0.33 -18.49 16 9 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 10 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 11 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 12 N -0.93 -28.09 13.06 55.49 0.72 -27.37 16 13 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 17 N -0.71 -11.94 3.59 -54.88 -0.20 -12.14 16 18 C 0.55 10.02 6.12 -12.51 -0.08 9.94 16 19 O -0.50 -10.30 12.30 5.28 0.06 -10.24 16 20 C -0.10 -1.63 5.91 -104.61 -0.62 -2.25 16 21 C -0.06 -0.79 9.52 -39.16 -0.37 -1.16 16 22 C -0.12 -1.30 9.93 -40.03 -0.40 -1.70 16 23 C -0.08 -0.82 9.75 -39.43 -0.38 -1.20 16 24 C -0.11 -1.40 5.74 -106.82 -0.61 -2.02 16 25 C -0.06 -0.59 9.90 -39.19 -0.39 -0.98 16 26 C -0.18 -1.69 10.03 -39.79 -0.40 -2.09 16 27 C 0.13 1.56 11.15 -17.44 -0.19 1.36 16 28 N -0.43 -7.15 8.44 -10.76 -0.09 -7.24 16 29 C 0.16 2.58 6.61 -84.58 -0.56 2.02 16 30 H 0.06 1.05 7.53 -51.93 -0.39 0.66 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.87 5.78 -51.93 -0.30 0.57 16 33 H 0.06 0.83 6.54 -51.93 -0.34 0.49 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.67 7.60 -51.93 -0.39 0.28 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.82 6.32 -51.93 -0.33 0.49 16 39 H 0.03 0.52 6.18 -51.93 -0.32 0.20 16 40 H 0.03 0.69 6.71 -51.93 -0.35 0.34 16 41 H 0.39 10.37 7.33 -40.82 -0.30 10.07 16 42 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.40 6.33 6.63 -40.82 -0.27 6.06 16 44 H 0.14 1.65 6.37 -52.49 -0.33 1.32 16 45 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 46 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 47 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 48 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 49 H 0.16 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 387.88 15.07 5.85 5.85 Total: -1.00 -34.36 387.88 -9.70 -44.06 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -7.07 Total: 14.29 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -3.62 Total: -5.96 kcal Atomic # 7 Polarization: -65.34 SS G_CDS: 0.11 Total: -65.23 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.06 Total: -10.24 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.36 -9.70 -44.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755827153.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.197 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds