Wall clock time and date at job start Wed Apr 1 2020 01:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46637 * 2 1 4 4 C 1.52996 * 109.47302 * 239.99912 * 2 1 3 5 5 C 1.53000 * 109.46886 * 119.99695 * 2 1 3 6 6 H 1.09002 * 109.47398 * 300.00496 * 5 2 1 7 7 C 1.52997 * 109.47060 * 180.02562 * 5 2 1 8 8 N 1.46500 * 109.47520 * 185.00200 * 7 5 2 9 9 C 1.36935 * 120.00067 * 179.97438 * 8 7 5 10 10 H 1.07995 * 120.00414 * 0.02562 * 9 8 7 11 11 C 1.38818 * 119.99870 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99958 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 119.99988 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47275 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47167 * 120.00212 * 13 11 9 16 16 H 1.48504 * 109.46839 * 239.99626 * 13 11 9 17 17 N 1.46500 * 109.47023 * 60.00568 * 5 2 1 18 18 C 1.34779 * 119.99793 * 274.99565 * 17 5 2 19 19 O 1.21600 * 120.00336 * 0.02562 * 18 17 5 20 20 C 1.47440 * 119.99710 * 179.97438 * 18 17 5 21 21 C 1.38744 * 120.33198 * 0.02562 * 20 18 17 22 22 C 1.38866 * 120.72289 * 179.97438 * 21 20 18 23 23 C 1.36355 * 121.05594 * 359.97438 * 22 21 20 24 24 C 1.40435 * 120.08717 * 359.97438 * 23 22 21 25 25 C 1.40809 * 121.26299 * 180.02562 * 24 23 22 26 26 C 1.36640 * 118.14995 * 179.26595 * 25 24 23 27 27 C 1.39237 * 119.90632 * 0.70789 * 26 25 24 28 28 N 1.31231 * 121.69595 * 359.50317 * 27 26 25 29 29 C 1.33346 * 121.35229 * 0.02562 * 28 27 26 30 30 H 1.09002 * 109.47508 * 299.99876 * 1 2 3 31 31 H 1.09000 * 109.47437 * 60.00474 * 1 2 3 32 32 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46986 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47662 * 299.99908 * 3 2 1 35 35 H 1.09002 * 109.47075 * 60.00414 * 3 2 1 36 36 H 1.08992 * 109.47554 * 299.99692 * 4 2 1 37 37 H 1.09004 * 109.47108 * 59.99942 * 4 2 1 38 38 H 1.09000 * 109.46870 * 179.97438 * 4 2 1 39 39 H 1.09004 * 109.47346 * 305.00346 * 7 5 2 40 40 H 1.09002 * 109.47196 * 65.00121 * 7 5 2 41 41 H 0.96995 * 119.99638 * 359.97438 * 8 7 5 42 42 H 0.96992 * 120.00256 * 180.02562 * 12 11 9 43 43 H 0.97004 * 120.00223 * 94.99655 * 17 5 2 44 44 H 1.07999 * 119.63940 * 359.97438 * 21 20 18 45 45 H 1.07998 * 119.47059 * 180.02562 * 22 21 20 46 46 H 1.08008 * 119.95242 * 179.97438 * 23 22 21 47 47 H 1.07991 * 120.92725 * 359.96274 * 25 24 23 48 48 H 1.07994 * 120.04847 * 180.20954 * 26 25 24 49 49 H 1.08002 * 119.15039 * 179.52560 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 1.6765 -0.2074 2.1393 7 6 3.5699 -0.7207 1.2497 8 7 4.0584 -1.5128 2.3811 9 6 5.4047 -1.6563 2.5860 10 1 6.1065 -1.1852 1.9138 11 6 5.8674 -2.4074 3.6578 12 7 5.0122 -2.9821 4.4767 13 14 7.7039 -2.6025 3.9377 14 1 8.4464 -1.8645 2.8845 15 1 8.0621 -2.0566 5.2715 16 1 8.0633 -4.0423 3.8795 17 7 1.5517 -2.1024 1.2493 18 6 0.3297 -2.3852 1.7425 19 8 -0.3677 -1.4938 2.1872 20 6 -0.1619 -3.7752 1.7420 21 6 0.6279 -4.7975 1.2359 22 6 0.1732 -6.1096 1.2318 23 6 -1.0577 -6.4291 1.7239 24 6 -1.8892 -5.4252 2.2466 25 6 -3.1644 -5.7273 2.7616 26 6 -3.9141 -4.7035 3.2684 27 6 -3.4155 -3.4036 3.2515 28 7 -2.2281 -3.1268 2.7662 29 6 -1.4434 -4.0816 2.2654 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6768 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7208 -1.2493 39 1 3.9337 -1.1547 0.3183 40 1 3.9329 0.3032 1.3394 41 1 3.4281 -1.9357 2.9850 42 1 5.3355 -3.5066 5.2258 43 1 2.1079 -2.8135 0.8942 44 1 1.6070 -4.5704 0.8407 45 1 0.8049 -6.8897 0.8333 46 1 -1.3937 -7.4555 1.7116 47 1 -3.5351 -6.7416 2.7662 48 1 -4.8952 -4.9011 3.6742 49 1 -4.0215 -2.6025 3.6483 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755827153.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:35 Heat of formation + Delta-G solvation = 12.292422 kcal Electronic energy + Delta-G solvation = -30398.959764 eV Core-core repulsion = 26518.413554 eV Total energy + Delta-G solvation = -3880.546211 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.00500 -40.93853 -38.61831 -37.82678 -36.19507 -34.65670 -34.26472 -32.99283 -31.47750 -31.14700 -29.26375 -28.15770 -27.83523 -25.91914 -25.40862 -24.41648 -24.18859 -22.94716 -21.37285 -19.89397 -19.28665 -19.18695 -18.48880 -17.77315 -17.09264 -17.00187 -16.72665 -16.36923 -15.66327 -15.56919 -15.47703 -15.16832 -15.05586 -14.89261 -14.81915 -14.45159 -14.18688 -14.08551 -13.83805 -13.59390 -13.16158 -13.03069 -12.98650 -12.93596 -12.77609 -12.71221 -12.52804 -12.37202 -12.26729 -12.13460 -12.00769 -11.74102 -11.64425 -11.43841 -11.28826 -11.00378 -10.87410 -10.07235 -9.83669 -9.78368 -9.24059 -8.98969 -7.92957 -5.22918 -0.79436 -0.14790 0.80345 1.47762 1.48999 1.58898 1.82231 2.22595 2.34234 2.56551 3.19695 3.36656 3.41095 3.57231 3.67323 3.78028 3.83280 3.90539 4.01107 4.03812 4.07401 4.20008 4.24958 4.34777 4.43229 4.45191 4.54628 4.63988 4.71880 4.80814 4.83457 4.90103 4.93799 4.95846 5.00204 5.06126 5.07818 5.11257 5.16815 5.23192 5.24799 5.30903 5.37076 5.45720 5.51434 5.55782 5.57146 5.70184 5.86410 6.26992 6.66085 7.10590 7.33965 7.41463 8.07738 8.32055 9.30360 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009465 B = 0.003846 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.532523 B = 7277.995213 C = 9111.850150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.070 4.070 3 C -0.138 4.138 4 C -0.135 4.135 5 C 0.161 3.839 6 H 0.049 0.951 7 C 0.146 3.854 8 N -0.743 5.743 9 C -0.240 4.240 10 H 0.080 0.920 11 C -0.074 4.074 12 N -0.970 5.970 13 Si 0.973 3.027 14 H -0.263 1.263 15 H -0.299 1.299 16 H -0.292 1.292 17 N -0.704 5.704 18 C 0.549 3.451 19 O -0.539 6.539 20 C -0.149 4.149 21 C -0.054 4.054 22 C -0.132 4.132 23 C -0.057 4.057 24 C -0.132 4.132 25 C -0.050 4.050 26 C -0.175 4.175 27 C 0.116 3.884 28 N -0.494 5.494 29 C 0.132 3.868 30 H 0.036 0.964 31 H 0.061 0.939 32 H 0.034 0.966 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.038 0.962 41 H 0.372 0.628 42 H 0.249 0.751 43 H 0.402 0.598 44 H 0.140 0.860 45 H 0.167 0.833 46 H 0.177 0.823 47 H 0.183 0.817 48 H 0.176 0.824 49 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.187 -7.453 -11.417 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.071 4.071 3 C -0.196 4.196 4 C -0.192 4.192 5 C 0.056 3.944 6 H 0.067 0.933 7 C 0.019 3.981 8 N -0.386 5.386 9 C -0.372 4.372 10 H 0.098 0.902 11 C -0.266 4.266 12 N -0.621 5.621 13 Si 0.802 3.198 14 H -0.188 1.188 15 H -0.227 1.227 16 H -0.219 1.219 17 N -0.356 5.356 18 C 0.337 3.663 19 O -0.416 6.416 20 C -0.152 4.152 21 C -0.075 4.075 22 C -0.150 4.150 23 C -0.075 4.075 24 C -0.134 4.134 25 C -0.076 4.076 26 C -0.194 4.194 27 C -0.056 4.056 28 N -0.202 5.202 29 C 0.010 3.990 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.203 0.797 42 H 0.058 0.942 43 H 0.239 0.761 44 H 0.157 0.843 45 H 0.185 0.815 46 H 0.195 0.805 47 H 0.200 0.800 48 H 0.194 0.806 49 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -17.071 -5.887 -11.208 21.253 hybrid contribution 0.830 -0.999 0.936 1.601 sum -16.241 -6.885 -10.273 20.413 Atomic orbital electron populations 1.21723 0.94386 1.00636 1.00576 1.20855 0.95596 0.96166 0.94522 1.21872 1.01479 0.94052 1.02151 1.21857 1.01361 0.99912 0.96110 1.21052 0.93370 0.82079 0.97883 0.93258 1.21222 0.90665 0.95219 0.90973 1.42568 1.04018 1.60784 1.31217 1.19677 0.84569 1.24701 1.08254 0.90178 1.25550 1.01729 1.01134 0.98169 1.69862 1.34364 1.39419 1.18412 0.85081 0.80350 0.77073 0.77280 1.18763 1.22669 1.21935 1.45788 1.16804 1.10015 1.62970 1.18219 0.81595 0.88558 0.77904 1.90777 1.56742 1.48047 1.46063 1.20019 0.95354 0.93932 1.05945 1.21750 0.98562 0.93160 0.94022 1.21236 0.97325 0.95838 1.00584 1.21653 0.92789 0.99924 0.93180 1.19203 0.97828 0.93377 1.02963 1.21972 0.90898 1.01970 0.92766 1.22302 1.03115 0.92829 1.01185 1.23657 0.91157 0.97854 0.92902 1.68242 1.05878 1.36168 1.09892 1.18902 0.93447 0.90156 0.96519 0.94444 0.92002 0.94656 0.91836 0.90577 0.93628 0.93165 0.91157 0.91813 0.93578 0.94464 0.79661 0.94233 0.76129 0.84262 0.81524 0.80521 0.79965 0.80616 0.81097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.65 6.99 71.98 0.50 -3.14 16 2 C -0.07 -2.05 0.62 -52.18 -0.03 -2.08 16 3 C -0.14 -3.61 8.12 71.98 0.58 -3.02 16 4 C -0.14 -3.34 7.97 71.98 0.57 -2.77 16 5 C 0.16 5.92 1.69 44.99 0.08 6.00 16 6 H 0.05 2.17 7.58 -2.39 -0.02 2.16 16 7 C 0.15 5.79 5.10 86.38 0.44 6.23 16 8 N -0.74 -37.92 5.43 -343.45 -1.87 -39.79 16 9 C -0.24 -13.28 9.99 84.04 0.84 -12.44 16 10 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 11 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 12 N -0.97 -60.21 13.06 21.65 0.28 -59.93 16 13 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 14 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 15 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 16 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 17 N -0.70 -25.42 3.59 -445.79 -1.60 -27.02 16 18 C 0.55 21.73 6.12 86.67 0.53 22.26 16 19 O -0.54 -24.51 12.30 -4.03 -0.05 -24.56 16 20 C -0.15 -5.15 5.91 -19.86 -0.12 -5.27 16 21 C -0.05 -1.48 9.52 22.54 0.21 -1.27 16 22 C -0.13 -2.62 9.93 21.98 0.22 -2.40 16 23 C -0.06 -1.01 9.75 22.37 0.22 -0.79 16 24 C -0.13 -3.12 5.74 -21.29 -0.12 -3.25 16 25 C -0.05 -0.83 9.90 22.52 0.22 -0.60 16 26 C -0.17 -2.94 10.03 22.14 0.22 -2.72 16 27 C 0.12 2.92 11.15 85.02 0.95 3.87 16 28 N -0.49 -17.51 8.44 -187.96 -1.59 -19.09 16 29 C 0.13 4.42 6.61 40.61 0.27 4.69 16 30 H 0.04 1.34 7.53 -2.39 -0.02 1.33 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.03 1.23 5.78 -2.39 -0.01 1.21 16 33 H 0.06 1.64 6.54 -2.39 -0.02 1.62 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.05 1.26 7.60 -2.39 -0.02 1.24 16 37 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.06 1.56 6.32 -2.39 -0.02 1.54 16 39 H 0.05 1.70 6.18 -2.39 -0.01 1.69 16 40 H 0.04 1.49 6.71 -2.39 -0.02 1.47 16 41 H 0.37 20.97 7.33 -92.71 -0.68 20.29 16 42 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 43 H 0.40 13.55 6.63 -92.71 -0.61 12.93 16 44 H 0.14 3.50 6.37 -2.91 -0.02 3.48 16 45 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 46 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 47 H 0.18 1.27 8.06 -2.92 -0.02 1.25 16 48 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 49 H 0.17 3.41 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -80.42 387.88 2.95 -77.46 By element: Atomic # 1 Polarization: 45.60 SS G_CDS: -0.31 Total: 45.29 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 6.06 Total: -0.46 kcal Atomic # 7 Polarization: -141.06 SS G_CDS: -4.77 Total: -145.83 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.05 Total: -24.56 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -80.42 2.95 -77.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755827153.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.757 kcal (2) G-P(sol) polarization free energy of solvation -80.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds