Wall clock time and date at job start Wed Apr 1 2020 01:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46844 * 2 1 4 4 C 1.53002 * 109.47142 * 239.99812 * 2 1 3 5 5 C 1.52997 * 109.46797 * 119.99897 * 2 1 3 6 6 H 1.09001 * 109.46899 * 179.97438 * 5 2 1 7 7 C 1.52995 * 109.47395 * 300.00058 * 5 2 1 8 8 N 1.46497 * 109.47405 * 174.99891 * 7 5 2 9 9 C 1.36936 * 120.00161 * 179.97438 * 8 7 5 10 10 H 1.08000 * 119.99816 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00223 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99643 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00148 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47221 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46943 * 120.00031 * 13 11 9 16 16 H 1.48494 * 109.47473 * 240.00172 * 13 11 9 17 17 N 1.46506 * 109.47269 * 60.00208 * 5 2 1 18 18 C 1.34771 * 119.99861 * 84.99835 * 17 5 2 19 19 O 1.21605 * 120.00461 * 359.97438 * 18 17 5 20 20 C 1.47439 * 119.99953 * 180.02562 * 18 17 5 21 21 C 1.38745 * 120.33149 * 359.97438 * 20 18 17 22 22 C 1.38869 * 120.73140 * 179.97438 * 21 20 18 23 23 C 1.36344 * 121.05345 * 0.02562 * 22 21 20 24 24 C 1.40442 * 120.08328 * 359.95958 * 23 22 21 25 25 C 1.40809 * 121.25523 * 180.02562 * 24 23 22 26 26 C 1.36626 * 118.15357 * 180.02562 * 25 24 23 27 27 C 1.39240 * 119.90956 * 359.97438 * 26 25 24 28 28 N 1.31226 * 121.69374 * 0.02740 * 27 26 25 29 29 C 1.33350 * 121.35556 * 359.95043 * 28 27 26 30 30 H 1.08992 * 109.47317 * 300.00607 * 1 2 3 31 31 H 1.09009 * 109.46609 * 60.00518 * 1 2 3 32 32 H 1.09000 * 109.47083 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46683 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47266 * 299.99130 * 3 2 1 35 35 H 1.08996 * 109.47583 * 60.00110 * 3 2 1 36 36 H 1.09000 * 109.47364 * 300.00113 * 4 2 1 37 37 H 1.08999 * 109.46879 * 60.00280 * 4 2 1 38 38 H 1.09001 * 109.47201 * 180.02562 * 4 2 1 39 39 H 1.09001 * 109.46901 * 295.00088 * 7 5 2 40 40 H 1.09000 * 109.47078 * 55.00069 * 7 5 2 41 41 H 0.97001 * 119.99964 * 0.02562 * 8 7 5 42 42 H 0.97003 * 119.99738 * 180.02562 * 12 11 9 43 43 H 0.97000 * 119.99821 * 264.99940 * 17 5 2 44 44 H 1.08006 * 119.63744 * 359.70064 * 21 20 18 45 45 H 1.08000 * 119.47023 * 179.97438 * 22 21 20 46 46 H 1.07999 * 119.96156 * 179.97438 * 23 22 21 47 47 H 1.08004 * 120.92638 * 359.97438 * 25 24 23 48 48 H 1.08005 * 120.04857 * 179.97438 * 26 25 24 49 49 H 1.07993 * 119.15510 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1300 -0.7216 1.2490 7 6 1.5300 0.0000 2.4985 8 7 1.9174 -0.7566 3.6916 9 6 1.5688 -0.3005 4.9348 10 1 1.0078 0.6169 5.0356 11 6 1.9354 -1.0176 6.0653 12 7 2.6187 -2.1359 5.9423 13 14 1.4592 -0.3957 7.7611 14 1 0.6993 0.8731 7.6277 15 1 0.6132 -1.4097 8.4406 16 1 2.6858 -0.1566 8.5632 17 7 1.5516 -2.1025 1.2493 18 6 2.2285 -3.0565 0.5798 19 8 3.2442 -2.7708 -0.0246 20 6 1.7367 -4.4465 0.5794 21 6 0.5783 -4.7801 1.2662 22 6 0.1074 -6.0865 1.2709 23 6 0.7683 -7.0747 0.6033 24 6 1.9447 -6.7807 -0.1051 25 6 2.6466 -7.7819 -0.8034 26 6 3.7842 -7.4255 -1.4709 27 6 4.2175 -6.1024 -1.4471 28 7 3.5596 -5.1731 -0.7947 29 6 2.4423 -5.4553 -0.1238 30 1 -0.3633 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6767 -1.7490 -1.2493 37 1 1.6768 -0.2074 -2.1392 38 1 3.1301 -0.7217 -1.2490 39 1 1.9646 0.9985 2.5444 40 1 0.4437 0.0782 2.4548 41 1 2.4216 -1.5803 3.6010 42 1 2.8746 -2.6372 6.7323 43 1 0.7412 -2.3304 1.7311 44 1 0.0392 -4.0162 1.8069 45 1 -0.7963 -6.3236 1.8126 46 1 0.3865 -8.0848 0.6191 47 1 2.2959 -8.8034 -0.8106 48 1 4.3467 -8.1690 -2.0162 49 1 5.1185 -5.8343 -1.9786 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755827154.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:42 Heat of formation + Delta-G solvation = 34.128169 kcal Electronic energy + Delta-G solvation = -30398.154758 eV Core-core repulsion = 26518.555416 eV Total energy + Delta-G solvation = -3879.599341 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.00208 -39.67780 -37.39871 -36.76889 -34.37909 -33.46601 -33.07454 -31.12239 -30.55814 -30.08865 -27.64040 -27.05637 -26.58986 -24.66577 -23.92614 -23.48425 -22.95188 -21.37168 -20.16795 -18.59318 -18.25880 -17.73181 -17.02970 -16.76164 -15.96255 -15.59988 -15.37694 -14.78345 -14.68059 -14.36908 -14.07330 -14.01659 -13.84068 -13.62784 -13.23330 -13.12515 -13.07855 -12.99836 -12.63738 -12.18952 -12.05089 -11.88210 -11.75594 -11.71494 -11.44334 -11.27986 -11.14915 -11.03136 -10.81815 -10.66691 -10.55281 -10.37729 -10.16389 -9.86124 -9.71815 -9.71403 -9.00916 -8.87732 -8.86586 -8.46738 -8.26066 -6.91892 -5.75863 -3.05340 0.12281 0.75229 1.72590 2.74732 3.42386 3.47876 3.48993 3.50690 3.55939 4.19417 4.25993 4.48303 4.58080 4.62844 4.73190 4.78971 4.95935 5.03064 5.03753 5.13926 5.20252 5.24750 5.38180 5.56127 5.57134 5.67178 5.78412 5.81495 5.84017 5.86494 5.94425 5.98447 6.00025 6.11828 6.12777 6.16449 6.20641 6.24227 6.26285 6.38697 6.39632 6.54440 6.54792 6.59352 6.70679 6.75524 6.82637 7.09514 7.70138 7.95412 8.06846 8.41869 8.75683 9.53673 10.11035 10.46360 11.46346 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009477 B = 0.003844 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.912874 B = 7281.729882 C = 9116.159332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.076 4.076 3 C -0.140 4.140 4 C -0.128 4.128 5 C 0.152 3.848 6 H 0.087 0.913 7 C 0.142 3.858 8 N -0.731 5.731 9 C -0.240 4.240 10 H 0.070 0.930 11 C -0.012 4.012 12 N -0.930 5.930 13 Si 0.905 3.095 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.292 1.292 17 N -0.708 5.708 18 C 0.553 3.447 19 O -0.501 6.501 20 C -0.101 4.101 21 C -0.060 4.060 22 C -0.120 4.120 23 C -0.079 4.079 24 C -0.112 4.112 25 C -0.061 4.061 26 C -0.178 4.178 27 C 0.127 3.873 28 N -0.432 5.432 29 C 0.162 3.838 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.039 0.961 38 H 0.062 0.938 39 H 0.035 0.965 40 H 0.028 0.972 41 H 0.386 0.614 42 H 0.254 0.746 43 H 0.399 0.601 44 H 0.138 0.862 45 H 0.134 0.866 46 H 0.132 0.868 47 H 0.137 0.863 48 H 0.135 0.865 49 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.811 -9.459 -16.990 20.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.185 4.185 5 C 0.047 3.953 6 H 0.105 0.895 7 C 0.014 3.986 8 N -0.376 5.376 9 C -0.371 4.371 10 H 0.088 0.912 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.736 3.264 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.360 5.360 18 C 0.339 3.661 19 O -0.376 6.376 20 C -0.105 4.105 21 C -0.080 4.080 22 C -0.138 4.138 23 C -0.098 4.098 24 C -0.114 4.114 25 C -0.087 4.087 26 C -0.198 4.198 27 C -0.046 4.046 28 N -0.138 5.138 29 C 0.039 3.961 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.046 0.954 41 H 0.220 0.780 42 H 0.064 0.936 43 H 0.234 0.766 44 H 0.155 0.845 45 H 0.152 0.848 46 H 0.150 0.850 47 H 0.155 0.845 48 H 0.153 0.847 49 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.901 -8.198 -17.221 19.468 hybrid contribution -0.746 -1.121 1.351 1.907 sum -4.648 -9.319 -15.870 18.982 Atomic orbital electron populations 1.21907 0.94850 1.01533 1.01501 1.20903 0.95719 0.95555 0.95601 1.21880 1.01205 0.95052 1.01652 1.21872 1.01717 0.99624 0.95319 1.21235 0.99827 0.80006 0.94196 0.89531 1.21097 0.97313 0.94703 0.85509 1.42384 1.66948 1.27793 1.00497 1.19253 1.28816 1.05433 0.83635 0.91153 1.24738 1.00922 0.97405 0.97752 1.69690 1.43327 1.16496 1.28300 0.86147 0.77579 0.77788 0.84843 1.20577 1.21947 1.21915 1.45860 1.29138 1.08415 1.52616 1.17765 0.84280 0.84078 0.79959 1.90824 1.23223 1.81561 1.41953 1.20031 0.96061 0.94041 1.00331 1.21555 0.94162 0.97272 0.95041 1.20863 1.00746 0.92566 0.99655 1.21114 0.93466 0.99729 0.95458 1.18830 0.97478 0.94289 1.00789 1.21424 0.94234 0.98764 0.94258 1.21930 0.97980 0.98283 1.01600 1.23157 0.98363 0.88757 0.94351 1.68328 1.05154 1.34902 1.05444 1.18620 0.91970 0.90443 0.95081 0.91958 0.93301 0.92965 0.92569 0.92991 0.91967 0.92885 0.94243 0.91919 0.94751 0.95444 0.78004 0.93601 0.76589 0.84478 0.84794 0.85049 0.84475 0.84683 0.82500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 7.97 37.16 0.30 -1.53 16 2 C -0.08 -1.10 0.62 -154.51 -0.10 -1.20 16 3 C -0.14 -1.87 8.12 37.16 0.30 -1.57 16 4 C -0.13 -1.93 7.00 37.16 0.26 -1.67 16 5 C 0.15 2.65 1.69 -67.93 -0.11 2.53 16 6 H 0.09 1.74 7.57 -51.93 -0.39 1.35 16 7 C 0.14 2.77 5.10 -4.05 -0.02 2.74 16 8 N -0.73 -18.16 5.43 -59.91 -0.33 -18.48 16 9 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 10 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 11 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 12 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 13 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 16 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 17 N -0.71 -11.94 3.59 -54.88 -0.20 -12.14 16 18 C 0.55 10.02 6.12 -12.52 -0.08 9.94 16 19 O -0.50 -10.31 12.30 5.27 0.06 -10.24 16 20 C -0.10 -1.63 5.91 -104.61 -0.62 -2.25 16 21 C -0.06 -0.79 9.52 -39.16 -0.37 -1.16 16 22 C -0.12 -1.30 9.93 -40.03 -0.40 -1.70 16 23 C -0.08 -0.82 9.75 -39.43 -0.38 -1.20 16 24 C -0.11 -1.40 5.74 -106.82 -0.61 -2.02 16 25 C -0.06 -0.59 9.89 -39.19 -0.39 -0.98 16 26 C -0.18 -1.69 10.03 -39.79 -0.40 -2.09 16 27 C 0.13 1.56 11.15 -17.44 -0.19 1.36 16 28 N -0.43 -7.15 8.44 -10.76 -0.09 -7.24 16 29 C 0.16 2.58 6.61 -84.58 -0.56 2.02 16 30 H 0.06 0.82 6.32 -51.93 -0.33 0.49 16 31 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 32 H 0.05 0.67 7.60 -51.93 -0.39 0.28 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.83 6.54 -51.93 -0.34 0.49 16 36 H 0.05 0.87 5.77 -51.93 -0.30 0.57 16 37 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 1.05 7.52 -51.93 -0.39 0.66 16 39 H 0.03 0.68 6.71 -51.93 -0.35 0.34 16 40 H 0.03 0.52 6.17 -51.93 -0.32 0.20 16 41 H 0.39 10.36 7.33 -40.82 -0.30 10.07 16 42 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.40 6.33 6.63 -40.82 -0.27 6.06 16 44 H 0.14 1.65 6.37 -52.48 -0.33 1.32 16 45 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 46 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 47 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 48 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 49 H 0.16 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 387.88 15.07 5.85 5.85 Total: -1.00 -34.36 387.88 -9.70 -44.05 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -7.07 Total: 14.29 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -3.62 Total: -5.96 kcal Atomic # 7 Polarization: -65.33 SS G_CDS: 0.11 Total: -65.22 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.06 Total: -10.24 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.36 -9.70 -44.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755827154.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.180 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds