Wall clock time and date at job start Wed Apr 1 2020 01:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46844 * 2 1 4 4 C 1.53002 * 109.47142 * 239.99812 * 2 1 3 5 5 C 1.52997 * 109.46797 * 119.99897 * 2 1 3 6 6 H 1.09001 * 109.46899 * 179.97438 * 5 2 1 7 7 C 1.52995 * 109.47395 * 300.00058 * 5 2 1 8 8 N 1.46497 * 109.47405 * 174.99891 * 7 5 2 9 9 C 1.36936 * 120.00161 * 179.97438 * 8 7 5 10 10 H 1.08000 * 119.99816 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00223 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99643 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00148 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47221 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46943 * 120.00031 * 13 11 9 16 16 H 1.48494 * 109.47473 * 240.00172 * 13 11 9 17 17 N 1.46506 * 109.47269 * 60.00208 * 5 2 1 18 18 C 1.34771 * 119.99861 * 84.99835 * 17 5 2 19 19 O 1.21605 * 120.00461 * 359.97438 * 18 17 5 20 20 C 1.47439 * 119.99953 * 180.02562 * 18 17 5 21 21 C 1.38745 * 120.33149 * 359.97438 * 20 18 17 22 22 C 1.38869 * 120.73140 * 179.97438 * 21 20 18 23 23 C 1.36344 * 121.05345 * 0.02562 * 22 21 20 24 24 C 1.40442 * 120.08328 * 359.95958 * 23 22 21 25 25 C 1.40809 * 121.25523 * 180.02562 * 24 23 22 26 26 C 1.36626 * 118.15357 * 180.02562 * 25 24 23 27 27 C 1.39240 * 119.90956 * 359.97438 * 26 25 24 28 28 N 1.31226 * 121.69374 * 0.02740 * 27 26 25 29 29 C 1.33350 * 121.35556 * 359.95043 * 28 27 26 30 30 H 1.08992 * 109.47317 * 300.00607 * 1 2 3 31 31 H 1.09009 * 109.46609 * 60.00518 * 1 2 3 32 32 H 1.09000 * 109.47083 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46683 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47266 * 299.99130 * 3 2 1 35 35 H 1.08996 * 109.47583 * 60.00110 * 3 2 1 36 36 H 1.09000 * 109.47364 * 300.00113 * 4 2 1 37 37 H 1.08999 * 109.46879 * 60.00280 * 4 2 1 38 38 H 1.09001 * 109.47201 * 180.02562 * 4 2 1 39 39 H 1.09001 * 109.46901 * 295.00088 * 7 5 2 40 40 H 1.09000 * 109.47078 * 55.00069 * 7 5 2 41 41 H 0.97001 * 119.99964 * 0.02562 * 8 7 5 42 42 H 0.97003 * 119.99738 * 180.02562 * 12 11 9 43 43 H 0.97000 * 119.99821 * 264.99940 * 17 5 2 44 44 H 1.08006 * 119.63744 * 359.70064 * 21 20 18 45 45 H 1.08000 * 119.47023 * 179.97438 * 22 21 20 46 46 H 1.07999 * 119.96156 * 179.97438 * 23 22 21 47 47 H 1.08004 * 120.92638 * 359.97438 * 25 24 23 48 48 H 1.08005 * 120.04857 * 179.97438 * 26 25 24 49 49 H 1.07993 * 119.15510 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1300 -0.7216 1.2490 7 6 1.5300 0.0000 2.4985 8 7 1.9174 -0.7566 3.6916 9 6 1.5688 -0.3005 4.9348 10 1 1.0078 0.6169 5.0356 11 6 1.9354 -1.0176 6.0653 12 7 2.6187 -2.1359 5.9423 13 14 1.4592 -0.3957 7.7611 14 1 0.6993 0.8731 7.6277 15 1 0.6132 -1.4097 8.4406 16 1 2.6858 -0.1566 8.5632 17 7 1.5516 -2.1025 1.2493 18 6 2.2285 -3.0565 0.5798 19 8 3.2442 -2.7708 -0.0246 20 6 1.7367 -4.4465 0.5794 21 6 0.5783 -4.7801 1.2662 22 6 0.1074 -6.0865 1.2709 23 6 0.7683 -7.0747 0.6033 24 6 1.9447 -6.7807 -0.1051 25 6 2.6466 -7.7819 -0.8034 26 6 3.7842 -7.4255 -1.4709 27 6 4.2175 -6.1024 -1.4471 28 7 3.5596 -5.1731 -0.7947 29 6 2.4423 -5.4553 -0.1238 30 1 -0.3633 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6767 -1.7490 -1.2493 37 1 1.6768 -0.2074 -2.1392 38 1 3.1301 -0.7217 -1.2490 39 1 1.9646 0.9985 2.5444 40 1 0.4437 0.0782 2.4548 41 1 2.4216 -1.5803 3.6010 42 1 2.8746 -2.6372 6.7323 43 1 0.7412 -2.3304 1.7311 44 1 0.0392 -4.0162 1.8069 45 1 -0.7963 -6.3236 1.8126 46 1 0.3865 -8.0848 0.6191 47 1 2.2959 -8.8034 -0.8106 48 1 4.3467 -8.1690 -2.0162 49 1 5.1185 -5.8343 -1.9786 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755827154.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:41 Heat of formation + Delta-G solvation = 12.287296 kcal Electronic energy + Delta-G solvation = -30399.101849 eV Core-core repulsion = 26518.555416 eV Total energy + Delta-G solvation = -3880.546433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.00510 -40.93904 -38.61816 -37.82692 -36.19497 -34.65692 -34.26489 -32.99274 -31.47703 -31.14781 -29.26354 -28.15730 -27.83579 -25.91897 -25.40821 -24.41648 -24.18850 -22.94748 -21.37318 -19.89382 -19.28675 -19.18659 -18.48858 -17.77306 -17.09218 -17.00252 -16.72686 -16.36906 -15.66338 -15.56863 -15.47731 -15.16816 -15.05572 -14.89270 -14.81937 -14.45119 -14.18687 -14.08494 -13.83811 -13.59309 -13.16231 -13.03107 -12.98623 -12.93582 -12.77579 -12.71245 -12.52893 -12.37284 -12.26676 -12.13429 -12.00741 -11.74104 -11.64406 -11.43858 -11.28853 -11.00380 -10.87398 -10.07203 -9.83707 -9.78383 -9.24107 -8.98958 -7.92970 -5.22916 -0.79399 -0.14815 0.80370 1.47781 1.49036 1.58899 1.82223 2.22721 2.34106 2.56548 3.19724 3.36601 3.41116 3.57252 3.67337 3.78029 3.83287 3.90516 4.01072 4.03788 4.07397 4.20040 4.24948 4.34776 4.43203 4.45171 4.54636 4.63971 4.71864 4.80840 4.83430 4.90091 4.93823 4.95837 5.00201 5.06101 5.07795 5.11247 5.16807 5.23216 5.24828 5.30875 5.37082 5.45707 5.51424 5.55805 5.57156 5.70137 5.86415 6.26993 6.66091 7.10598 7.33968 7.41445 8.07735 8.32038 9.30337 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009477 B = 0.003844 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.912874 B = 7281.729882 C = 9116.159332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.070 4.070 3 C -0.138 4.138 4 C -0.116 4.116 5 C 0.161 3.839 6 H 0.049 0.951 7 C 0.146 3.854 8 N -0.743 5.743 9 C -0.240 4.240 10 H 0.080 0.920 11 C -0.074 4.074 12 N -0.970 5.970 13 Si 0.973 3.027 14 H -0.263 1.263 15 H -0.292 1.292 16 H -0.299 1.299 17 N -0.704 5.704 18 C 0.549 3.451 19 O -0.539 6.539 20 C -0.149 4.149 21 C -0.055 4.055 22 C -0.132 4.132 23 C -0.057 4.057 24 C -0.132 4.132 25 C -0.051 4.051 26 C -0.175 4.175 27 C 0.116 3.884 28 N -0.494 5.494 29 C 0.132 3.868 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.034 0.966 37 H 0.061 0.939 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.047 0.953 41 H 0.372 0.628 42 H 0.249 0.751 43 H 0.402 0.598 44 H 0.140 0.860 45 H 0.167 0.833 46 H 0.177 0.823 47 H 0.183 0.817 48 H 0.176 0.824 49 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.116 -11.013 -17.607 21.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.071 4.071 3 C -0.196 4.196 4 C -0.173 4.173 5 C 0.056 3.944 6 H 0.067 0.933 7 C 0.019 3.981 8 N -0.386 5.386 9 C -0.372 4.372 10 H 0.098 0.902 11 C -0.266 4.266 12 N -0.621 5.621 13 Si 0.802 3.198 14 H -0.188 1.188 15 H -0.219 1.219 16 H -0.227 1.227 17 N -0.356 5.356 18 C 0.337 3.663 19 O -0.416 6.416 20 C -0.152 4.152 21 C -0.075 4.075 22 C -0.150 4.150 23 C -0.075 4.075 24 C -0.134 4.134 25 C -0.076 4.076 26 C -0.194 4.194 27 C -0.056 4.056 28 N -0.202 5.202 29 C 0.010 3.990 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.203 0.797 42 H 0.058 0.942 43 H 0.239 0.761 44 H 0.157 0.843 45 H 0.185 0.815 46 H 0.195 0.805 47 H 0.200 0.800 48 H 0.194 0.806 49 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.246 -9.713 -17.860 21.268 hybrid contribution 0.016 -0.711 1.435 1.601 sum -6.231 -10.425 -16.426 20.428 Atomic orbital electron populations 1.21860 0.92984 1.01801 1.02595 1.20856 0.97077 0.95757 0.93452 1.21871 1.00618 0.94182 1.02882 1.21723 1.00004 0.98983 0.96610 1.21054 0.97686 0.80742 0.94904 0.93255 1.21220 0.98132 0.94267 0.84455 1.42570 1.66800 1.27709 1.01509 1.19677 1.27621 1.05267 0.84639 0.90181 1.25550 1.01667 0.97849 1.01514 1.69866 1.45278 1.18066 1.28842 0.85080 0.76881 0.77768 0.80051 1.18767 1.21933 1.22667 1.45788 1.29098 1.08149 1.52539 1.18218 0.83743 0.85178 0.79140 1.90779 1.24842 1.82341 1.43677 1.20019 0.98358 0.93079 1.03787 1.21751 0.93019 0.98905 0.93829 1.21234 1.02034 0.91397 1.00312 1.21651 0.91690 1.01535 0.92673 1.19206 0.98751 0.93543 1.01873 1.21971 0.93402 0.99980 0.92262 1.22301 0.98213 0.97563 1.01354 1.23655 0.98486 0.89954 0.93470 1.68240 1.06766 1.37360 1.07812 1.18901 0.92365 0.92040 0.95715 0.91808 0.91159 0.93171 0.93626 0.90578 0.91837 0.94657 0.91997 0.94446 0.94466 0.93575 0.79660 0.94235 0.76129 0.84269 0.81524 0.80523 0.79965 0.80614 0.81096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 7.97 71.98 0.57 -2.77 16 2 C -0.07 -2.05 0.62 -52.18 -0.03 -2.08 16 3 C -0.14 -3.61 8.12 71.98 0.58 -3.02 16 4 C -0.12 -3.65 7.00 71.98 0.50 -3.14 16 5 C 0.16 5.92 1.69 44.99 0.08 6.00 16 6 H 0.05 2.17 7.57 -2.39 -0.02 2.16 16 7 C 0.15 5.79 5.10 86.38 0.44 6.23 16 8 N -0.74 -37.92 5.43 -343.46 -1.87 -39.79 16 9 C -0.24 -13.28 9.99 84.03 0.84 -12.44 16 10 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 11 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 12 N -0.97 -60.20 13.06 21.65 0.28 -59.92 16 13 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 14 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 15 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 16 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 17 N -0.70 -25.42 3.59 -445.80 -1.60 -27.02 16 18 C 0.55 21.73 6.12 86.67 0.53 22.26 16 19 O -0.54 -24.52 12.30 -4.05 -0.05 -24.57 16 20 C -0.15 -5.15 5.91 -19.86 -0.12 -5.27 16 21 C -0.05 -1.48 9.52 22.54 0.21 -1.27 16 22 C -0.13 -2.62 9.93 21.98 0.22 -2.40 16 23 C -0.06 -1.01 9.75 22.36 0.22 -0.79 16 24 C -0.13 -3.12 5.74 -21.29 -0.12 -3.25 16 25 C -0.05 -0.83 9.89 22.52 0.22 -0.60 16 26 C -0.17 -2.94 10.03 22.13 0.22 -2.71 16 27 C 0.12 2.92 11.15 85.02 0.95 3.86 16 28 N -0.49 -17.50 8.44 -187.97 -1.59 -19.08 16 29 C 0.13 4.42 6.61 40.61 0.27 4.69 16 30 H 0.06 1.56 6.32 -2.39 -0.02 1.54 16 31 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.05 1.26 7.60 -2.39 -0.02 1.24 16 33 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.64 6.54 -2.39 -0.02 1.62 16 36 H 0.03 1.23 5.77 -2.39 -0.01 1.21 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.04 1.34 7.52 -2.39 -0.02 1.32 16 39 H 0.04 1.49 6.71 -2.39 -0.02 1.47 16 40 H 0.05 1.70 6.17 -2.39 -0.01 1.69 16 41 H 0.37 20.97 7.33 -92.71 -0.68 20.29 16 42 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 43 H 0.40 13.55 6.63 -92.71 -0.61 12.93 16 44 H 0.14 3.51 6.37 -2.91 -0.02 3.49 16 45 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 46 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 47 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 48 H 0.18 1.43 8.06 -2.91 -0.02 1.40 16 49 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -80.40 387.88 2.95 -77.45 By element: Atomic # 1 Polarization: 45.60 SS G_CDS: -0.31 Total: 45.29 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 6.06 Total: -0.47 kcal Atomic # 7 Polarization: -141.03 SS G_CDS: -4.77 Total: -145.80 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.05 Total: -24.57 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -80.40 2.95 -77.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755827154.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.735 kcal (2) G-P(sol) polarization free energy of solvation -80.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds