Wall clock time and date at job start Wed Apr 1 2020 00:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46889 * 1 3 3 C 1.46894 * 111.00303 * 2 1 4 4 C 1.46903 * 110.99959 * 123.95352 * 2 1 3 5 5 C 1.53002 * 109.47189 * 66.04589 * 4 2 1 6 6 N 1.46498 * 109.47165 * 180.02562 * 5 4 2 7 7 C 1.34774 * 120.00322 * 179.97438 * 6 5 4 8 8 O 1.21783 * 119.99554 * 0.02562 * 7 6 5 9 9 C 1.41493 * 120.00461 * 179.97438 * 7 6 5 10 10 C 1.35452 * 120.00190 * 179.97438 * 9 7 6 11 11 C 1.46381 * 120.00064 * 180.02562 * 10 9 7 12 12 C 1.36664 * 126.78113 * 0.02990 * 11 10 9 13 13 N 1.35623 * 109.69336 * 179.46382 * 12 11 10 14 14 C 1.46495 * 124.78393 * 179.91447 * 13 12 11 15 15 C 1.50705 * 109.46952 * 265.81272 * 14 13 12 16 16 H 1.08000 * 120.00140 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99863 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99981 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00083 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47115 * 89.99625 * 19 17 15 21 21 H 1.48502 * 109.47227 * 209.99928 * 19 17 15 22 22 H 1.48507 * 109.46983 * 330.00101 * 19 17 15 23 23 C 1.38000 * 110.43164 * 0.62714 * 13 12 11 24 24 C 1.39125 * 133.12635 * 179.27057 * 23 13 12 25 25 C 1.37772 * 119.92722 * 179.97438 * 24 23 13 26 26 C 1.38741 * 120.63495 * 0.02612 * 25 24 23 27 27 C 1.37779 * 120.29457 * 359.97438 * 26 25 24 28 28 C 1.39246 * 119.67602 * 0.25914 * 27 26 25 29 29 H 1.08998 * 109.47482 * 296.05096 * 1 2 3 30 30 H 1.08999 * 109.47184 * 56.05044 * 1 2 3 31 31 H 1.09005 * 109.47421 * 176.04454 * 1 2 3 32 32 H 1.09000 * 109.47172 * 183.95439 * 3 2 1 33 33 H 1.09001 * 109.46714 * 303.94883 * 3 2 1 34 34 H 1.08992 * 109.47378 * 63.95243 * 3 2 1 35 35 H 1.09005 * 109.47133 * 306.04506 * 4 2 1 36 36 H 1.09004 * 109.47291 * 186.04303 * 4 2 1 37 37 H 1.08992 * 109.47382 * 60.00136 * 5 4 2 38 38 H 1.09004 * 109.46771 * 300.00032 * 5 4 2 39 39 H 0.97004 * 120.00100 * 359.97438 * 6 5 4 40 40 H 1.08002 * 119.99836 * 0.02562 * 9 7 6 41 41 H 1.08002 * 119.99973 * 0.02562 * 10 9 7 42 42 H 1.07992 * 125.15548 * 359.97438 * 12 11 10 43 43 H 1.08998 * 109.46787 * 25.80840 * 14 13 12 44 44 H 1.08991 * 109.47656 * 145.81141 * 14 13 12 45 45 H 0.97001 * 120.00190 * 180.02562 * 18 17 15 46 46 H 1.08001 * 120.03435 * 0.02562 * 24 23 13 47 47 H 1.08005 * 119.68182 * 179.97438 * 25 24 23 48 48 H 1.07998 * 119.85479 * 179.97438 * 26 25 24 49 49 H 1.08002 * 120.15875 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9953 -0.7660 1.1376 5 6 1.6313 -2.2426 0.9704 6 7 2.1558 -3.0064 2.1052 7 6 1.9544 -4.3373 2.1725 8 8 1.3368 -4.9051 1.2897 9 6 2.4614 -5.0751 3.2683 10 6 2.2585 -6.4126 3.3362 11 6 2.7825 -7.1758 4.4700 12 6 3.4906 -6.6838 5.5304 13 7 3.7934 -7.6922 6.3852 14 6 4.5474 -7.5336 7.6311 15 6 6.0059 -7.8131 7.3746 16 1 6.3379 -8.0824 6.3828 17 6 6.9165 -7.7251 8.4061 18 7 8.1892 -7.9695 8.1824 19 14 6.3423 -7.2600 10.1218 20 1 5.9837 -8.4892 10.8740 21 1 7.4332 -6.5454 10.8322 22 1 5.1533 -6.3756 10.0231 23 6 3.3048 -8.8913 5.9080 24 6 3.3549 -10.1967 6.3865 25 6 2.7597 -11.2138 5.6728 26 6 2.1081 -10.9506 4.4765 27 6 2.0478 -9.6644 3.9862 28 6 2.6493 -8.6276 4.6949 29 1 -0.3634 0.4513 0.9232 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3634 -1.0252 -0.0709 32 1 3.0827 1.3431 -0.0709 33 1 1.5898 1.9162 -0.8525 34 1 1.7044 1.8723 0.9232 35 1 1.5610 -0.3872 2.0629 36 1 3.0797 -0.6612 1.1756 37 1 2.0657 -2.6214 0.0453 38 1 0.5470 -2.3475 0.9324 39 1 2.6481 -2.5542 2.8082 40 1 3.0095 -4.5717 4.0509 41 1 1.7100 -6.9160 2.5537 42 1 3.7604 -5.6476 5.6708 43 1 4.4320 -6.5138 7.9983 44 1 4.1691 -8.2331 8.3764 45 1 8.8298 -7.9079 8.9082 46 1 3.8592 -10.4124 7.3169 47 1 2.8014 -12.2258 6.0477 48 1 1.6462 -11.7575 3.9270 49 1 1.5404 -9.4621 3.0545 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120326607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:26 Heat of formation + Delta-G solvation = 43.578196 kcal Electronic energy + Delta-G solvation = -27768.990398 eV Core-core repulsion = 23889.800840 eV Total energy + Delta-G solvation = -3879.189558 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.92220 -39.68200 -37.95794 -36.71280 -34.75087 -34.27659 -32.97746 -31.32649 -29.96178 -29.73241 -28.43735 -27.99122 -27.15147 -24.88397 -23.39777 -22.77197 -21.91869 -21.49163 -20.70709 -20.09172 -18.48251 -17.33098 -17.26738 -16.51397 -16.15059 -16.08102 -15.78190 -15.18741 -15.10874 -14.92622 -14.70973 -14.64494 -13.96232 -13.72280 -13.62056 -13.54779 -13.42110 -13.10623 -12.77713 -12.66009 -12.46539 -12.26646 -12.14133 -12.03643 -11.80976 -11.75400 -11.48606 -11.45250 -11.16117 -11.04836 -10.87817 -10.56028 -10.41931 -9.99420 -9.78722 -9.62392 -9.08151 -8.93662 -8.82032 -8.71495 -7.78539 -6.91639 -6.40828 -4.46613 1.04539 1.69055 2.12130 3.02856 3.08597 3.08855 3.11919 3.16650 3.48017 3.82873 3.83708 4.07417 4.35515 4.50674 4.68872 4.80157 4.86535 4.95007 4.99227 5.08782 5.11312 5.15059 5.19487 5.22286 5.34828 5.42043 5.46511 5.49513 5.54093 5.63042 5.66875 5.74066 5.84006 5.96676 6.04723 6.14232 6.24105 6.28076 6.34099 6.37862 6.54598 6.55550 6.61719 6.72172 6.90639 6.97723 7.10805 7.12234 7.23632 7.60298 7.69775 7.72461 8.13813 8.41778 8.63599 9.13548 10.71148 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010031 B = 0.002252 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.546261 B =12430.950377 C =14782.113977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.544 5.544 3 C 0.025 3.975 4 C 0.043 3.957 5 C 0.124 3.876 6 N -0.737 5.737 7 C 0.563 3.437 8 O -0.563 6.563 9 C -0.295 4.295 10 C 0.083 3.917 11 C -0.220 4.220 12 C 0.130 3.870 13 N -0.434 5.434 14 C 0.203 3.797 15 C -0.551 4.551 16 H 0.083 0.917 17 C 0.081 3.919 18 N -0.881 5.881 19 Si 0.873 3.127 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.265 1.265 23 C 0.097 3.903 24 C -0.103 4.103 25 C -0.117 4.117 26 C -0.144 4.144 27 C -0.087 4.087 28 C -0.084 4.084 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.026 0.974 35 H 0.041 0.959 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.399 0.601 40 H 0.120 0.880 41 H 0.128 0.872 42 H 0.170 0.830 43 H 0.048 0.952 44 H 0.041 0.959 45 H 0.270 0.730 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.117 0.883 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.461 11.226 -8.938 19.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.268 5.268 3 C -0.123 4.123 4 C -0.086 4.086 5 C 0.000 4.000 6 N -0.389 5.389 7 C 0.356 3.644 8 O -0.444 6.444 9 C -0.317 4.317 10 C 0.062 3.938 11 C -0.227 4.227 12 C -0.006 4.006 13 N -0.108 5.108 14 C 0.083 3.917 15 C -0.589 4.589 16 H 0.101 0.899 17 C -0.124 4.124 18 N -0.517 5.517 19 Si 0.699 3.301 20 H -0.196 1.196 21 H -0.204 1.204 22 H -0.189 1.189 23 C -0.008 4.008 24 C -0.123 4.123 25 C -0.137 4.137 26 C -0.163 4.163 27 C -0.105 4.105 28 C -0.088 4.088 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.233 0.767 40 H 0.137 0.863 41 H 0.146 0.854 42 H 0.187 0.813 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.080 0.920 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.135 0.865 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.343 10.621 -9.554 19.548 hybrid contribution 0.143 1.006 2.174 2.399 sum -13.200 11.627 -7.380 19.076 Atomic orbital electron populations 1.22505 0.87033 1.02886 1.00614 1.61850 1.08352 1.14033 1.42607 1.22394 1.00964 0.88338 1.00643 1.22301 1.00928 0.93379 0.91956 1.21178 0.99291 0.89466 0.90088 1.45804 1.59019 1.08381 1.25744 1.17011 0.79384 0.81428 0.86547 1.90800 1.42623 1.69766 1.41212 1.21392 1.12813 0.95510 1.01950 1.21603 0.87697 0.92371 0.92155 1.18874 1.13046 0.91819 0.98995 1.22221 0.95159 0.93966 0.89286 1.44309 1.41850 1.04773 1.19872 1.20195 0.92835 0.98657 0.79979 1.21171 0.88677 1.50124 0.98885 0.89928 1.24836 0.94672 0.94105 0.98811 1.69868 1.01681 1.46998 1.33158 0.86903 0.79108 0.79515 0.84561 1.19596 1.20419 1.18938 1.18261 0.99713 0.87805 0.95059 1.20189 1.01456 0.89522 1.01178 1.20709 0.99278 0.98102 0.95570 1.20801 1.02308 0.96102 0.97104 1.20338 0.99557 0.91497 0.99116 1.19000 1.01745 0.92721 0.95293 0.95469 0.91182 0.90718 0.91125 0.91118 0.95542 0.94115 0.89977 0.90755 0.91708 0.76733 0.86253 0.85386 0.81253 0.93402 0.94088 0.91951 0.85883 0.86195 0.86479 0.86438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.32 60.06 0.56 0.68 16 2 N -0.54 -4.31 5.02 -251.27 -1.26 -5.57 16 3 C 0.02 0.15 9.57 60.06 0.57 0.73 16 4 C 0.04 0.33 5.07 -3.82 -0.02 0.31 16 5 C 0.12 1.25 5.60 -4.04 -0.02 1.23 16 6 N -0.74 -7.94 5.54 -63.26 -0.35 -8.29 16 7 C 0.56 8.07 7.56 -15.02 -0.11 7.96 16 8 O -0.56 -10.06 16.11 5.11 0.08 -9.98 16 9 C -0.29 -4.03 9.32 -39.34 -0.37 -4.40 16 10 C 0.08 1.26 9.68 -37.30 -0.36 0.90 16 11 C -0.22 -3.73 6.24 -103.41 -0.65 -4.38 16 12 C 0.13 2.25 10.66 -16.44 -0.18 2.08 16 13 N -0.43 -8.64 2.73 -115.37 -0.32 -8.95 16 14 C 0.20 4.34 4.77 -5.19 -0.02 4.31 16 15 C -0.55 -14.28 9.94 -34.44 -0.34 -14.62 16 16 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 17 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 18 N -0.88 -25.03 13.96 55.43 0.77 -24.25 16 19 Si 0.87 19.01 27.47 -169.99 -4.67 14.34 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 22 H -0.26 -5.39 6.54 56.52 0.37 -5.02 16 23 C 0.10 1.90 6.79 -83.95 -0.57 1.33 16 24 C -0.10 -1.87 9.97 -39.42 -0.39 -2.26 16 25 C -0.12 -1.79 10.01 -39.57 -0.40 -2.19 16 26 C -0.14 -2.09 10.03 -39.56 -0.40 -2.49 16 27 C -0.09 -1.36 10.09 -39.37 -0.40 -1.76 16 28 C -0.08 -1.51 6.36 -104.93 -0.67 -2.18 16 29 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.42 8.12 -51.93 -0.42 -0.01 16 31 H 0.07 0.56 6.47 -51.93 -0.34 0.22 16 32 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 33 H 0.07 0.38 8.12 -51.93 -0.42 -0.05 16 34 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 36 H 0.08 0.59 8.06 -51.93 -0.42 0.17 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.70 6.55 -51.93 -0.34 0.36 16 39 H 0.40 3.22 8.43 -40.82 -0.34 2.88 16 40 H 0.12 1.38 6.88 -52.49 -0.36 1.02 16 41 H 0.13 1.96 7.45 -52.49 -0.39 1.57 16 42 H 0.17 2.41 7.19 -52.49 -0.38 2.03 16 43 H 0.05 0.97 7.17 -51.93 -0.37 0.59 16 44 H 0.04 0.86 7.57 -51.93 -0.39 0.46 16 45 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 47 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 48 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 49 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 409.29 15.07 6.17 6.17 Total: -1.00 -31.57 409.29 -11.00 -42.56 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -7.57 Total: 6.69 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -3.85 Total: -12.71 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: -1.15 Total: -47.07 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.67 Total: 14.34 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.57 -11.00 -42.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120326607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.141 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds