Wall clock time and date at job start Wed Apr 1 2020 00:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46898 * 111.00416 * 2 1 4 4 C 1.52995 * 109.47081 * 66.04808 * 3 2 1 5 5 N 1.46505 * 109.47061 * 180.02562 * 4 3 2 6 6 C 1.34776 * 119.99973 * 179.97438 * 5 4 3 7 7 O 1.21277 * 120.00059 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00026 * 179.97438 * 6 5 4 9 9 N 1.46900 * 109.47511 * 180.02562 * 8 6 5 10 10 C 1.47185 * 110.99887 * 56.83974 * 9 8 6 11 11 C 1.52992 * 108.71825 * 167.62440 * 10 9 8 12 12 N 1.46018 * 110.03907 * 50.30733 * 11 10 9 13 13 C 1.33714 * 122.92358 * 341.83961 * 12 11 10 14 14 O 1.21278 * 118.61847 * 181.68683 * 13 12 11 15 15 C 1.46909 * 110.99602 * 293.95244 * 9 8 6 16 16 C 1.46905 * 111.00052 * 236.04150 * 2 1 3 17 17 C 1.50700 * 109.47318 * 293.95850 * 16 2 1 18 18 O 1.21297 * 119.99744 * 359.97438 * 17 16 2 19 19 N 1.34775 * 119.99896 * 179.97438 * 17 16 2 20 20 C 1.37099 * 119.99978 * 180.02562 * 19 17 16 21 21 H 1.08009 * 119.99699 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00348 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99876 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00199 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47166 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47159 * 120.00239 * 24 22 20 27 27 H 1.48499 * 109.47100 * 239.99836 * 24 22 20 28 28 H 1.09002 * 109.47028 * 59.99830 * 1 2 3 29 29 H 1.09000 * 109.47637 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46765 * 300.00291 * 1 2 3 31 31 H 1.09000 * 109.46915 * 306.04461 * 3 2 1 32 32 H 1.09003 * 109.47369 * 186.04755 * 3 2 1 33 33 H 1.09000 * 109.47529 * 60.00030 * 4 3 2 34 34 H 1.09000 * 109.47102 * 299.99684 * 4 3 2 35 35 H 0.96998 * 119.99759 * 0.02562 * 5 4 3 36 36 H 1.09000 * 109.47110 * 59.99891 * 8 6 5 37 37 H 1.09003 * 109.47140 * 300.00205 * 8 6 5 38 38 H 1.08996 * 109.59827 * 287.41046 * 10 9 8 39 39 H 1.09007 * 109.59444 * 47.86678 * 10 9 8 40 40 H 1.09003 * 109.37746 * 290.13187 * 11 10 9 41 41 H 1.09003 * 109.37887 * 170.47797 * 11 10 9 42 42 H 0.96997 * 118.53285 * 162.12828 * 12 11 10 43 43 H 1.09000 * 109.38197 * 53.50775 * 15 9 8 44 44 H 1.08999 * 109.38491 * 293.82036 * 15 9 8 45 45 H 1.09001 * 109.46663 * 53.95594 * 16 2 1 46 46 H 1.09000 * 109.47472 * 173.95667 * 16 2 1 47 47 H 0.97001 * 120.00169 * 0.02562 * 19 17 16 48 48 H 0.97001 * 120.00398 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 1.3182 5 7 2.1562 3.4253 1.3180 6 6 1.9548 4.2244 2.3844 7 8 1.3398 3.8110 3.3444 8 6 2.4949 5.6313 2.3844 9 7 2.1455 6.2900 3.6500 10 6 2.6524 5.5247 4.8006 11 6 2.5394 6.3924 6.0556 12 7 1.1925 6.9462 6.1614 13 6 0.3477 7.0053 5.1266 14 8 -0.7424 7.5097 5.2947 15 6 0.6924 6.4736 3.7643 16 6 1.9954 -0.7661 -1.1376 17 6 1.6368 -2.2205 -0.9728 18 8 1.0052 -2.5833 -0.0029 19 7 2.0179 -3.1181 -1.9032 20 6 1.6912 -4.4411 -1.7536 21 1 1.1288 -4.7642 -0.8899 22 6 2.0845 -5.3666 -2.7124 23 7 2.7701 -4.9738 -3.7625 24 14 1.6401 -7.1694 -2.5082 25 1 0.8728 -7.3506 -1.2497 26 1 0.8129 -7.6089 -3.6605 27 1 2.8817 -7.9820 -2.4517 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.5612 1.9273 -0.8309 32 1 3.0798 1.3443 -0.1083 33 1 2.0659 1.5015 2.1492 34 1 0.5473 2.0845 1.4265 35 1 2.6478 3.7560 0.5500 36 1 2.0610 6.1870 1.5532 37 1 3.5793 5.6042 2.2766 38 1 2.0592 4.6192 4.9273 39 1 3.6964 5.2600 4.6321 40 1 3.2618 7.2067 5.9986 41 1 2.7507 5.7848 6.9356 42 1 0.8990 7.2901 7.0195 43 1 0.1938 5.5162 3.6128 44 1 0.3560 7.1791 3.0046 45 1 1.5610 -0.3873 -2.0628 46 1 3.0797 -0.6613 -1.1756 47 1 2.5233 -2.8280 -2.6786 48 1 3.0450 -5.6199 -4.4317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663249759.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:36 Heat of formation + Delta-G solvation = -76.870036 kcal Electronic energy + Delta-G solvation = -29164.203702 eV Core-core repulsion = 24868.941854 eV Total energy + Delta-G solvation = -4295.261848 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.15888 -39.83196 -38.73985 -37.44055 -36.71510 -35.01855 -34.71236 -33.85897 -31.29813 -30.46920 -30.14634 -28.69599 -27.71354 -25.64811 -24.92923 -23.94507 -23.19724 -21.37842 -20.79240 -19.69202 -19.22016 -17.99733 -17.88587 -17.36218 -17.27734 -16.49091 -16.21293 -16.00653 -15.93520 -15.29001 -15.15205 -15.09490 -14.72400 -14.57576 -14.32517 -14.13978 -13.73904 -13.59976 -13.42381 -13.28163 -13.04988 -12.91626 -12.24384 -12.18975 -11.97898 -11.94901 -11.76073 -11.55684 -11.43434 -11.33950 -11.11572 -11.00120 -10.88392 -10.36636 -10.25806 -10.25794 -9.52579 -9.48293 -9.36130 -8.79153 -8.53641 -8.03715 -7.94553 -6.45382 -3.86168 2.14696 2.31456 2.70901 2.90645 3.13853 3.19681 3.24911 3.32124 3.85509 3.96513 4.16876 4.21285 4.32853 4.35017 4.46266 4.73721 4.84401 4.87069 4.91030 4.97292 5.01401 5.05618 5.18903 5.20548 5.24061 5.29764 5.55705 5.58180 5.61877 5.73874 5.80258 5.85456 5.92796 6.07440 6.10431 6.14807 6.22531 6.45529 6.49633 6.91371 7.04515 7.14670 7.25045 7.52275 7.78596 7.86136 8.02847 8.57777 9.14759 9.50308 10.01945 10.72370 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.032311 B = 0.001527 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.361504 B =18329.570923 C =18489.226859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.119 3.881 5 N -0.723 5.723 6 C 0.479 3.521 7 O -0.538 6.538 8 C 0.031 3.969 9 N -0.507 5.507 10 C 0.011 3.989 11 C 0.117 3.883 12 N -0.719 5.719 13 C 0.531 3.469 14 O -0.557 6.557 15 C 0.024 3.976 16 C 0.047 3.953 17 C 0.443 3.557 18 O -0.576 6.576 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 H 0.016 0.984 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.401 0.599 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.400 0.600 43 H 0.098 0.902 44 H 0.110 0.890 45 H 0.049 0.951 46 H 0.089 0.911 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.059 25.072 9.795 27.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.085 4.085 4 C -0.005 4.005 5 N -0.376 5.376 6 C 0.264 3.736 7 O -0.416 6.416 8 C -0.100 4.100 9 N -0.230 5.230 10 C -0.117 4.117 11 C -0.007 4.007 12 N -0.372 5.372 13 C 0.318 3.682 14 O -0.434 6.434 15 C -0.106 4.106 16 C -0.084 4.084 17 C 0.228 3.772 18 O -0.460 6.460 19 N -0.200 5.200 20 C -0.428 4.428 21 H 0.122 0.878 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 H 0.034 0.966 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.235 0.765 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.235 0.765 43 H 0.116 0.884 44 H 0.128 0.872 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.141 24.819 11.300 27.583 hybrid contribution -0.113 -0.942 -1.434 1.720 sum 4.028 23.877 9.866 26.147 Atomic orbital electron populations 1.22625 0.86438 1.04817 0.99075 1.61445 1.08973 1.10364 1.43161 1.22250 1.00751 0.89884 0.95570 1.21377 0.99655 0.80656 0.98766 1.46124 1.57326 1.14490 1.19617 1.22032 0.80231 0.88687 0.82654 1.90653 1.41335 1.75927 1.33724 1.22400 1.03373 0.89794 0.94480 1.62990 1.12154 1.46196 1.01684 1.22896 1.02369 0.97072 0.89358 1.21494 0.83382 0.97576 0.98291 1.45521 1.15538 1.63169 1.12933 1.20025 0.83907 0.77840 0.86446 1.90775 1.22781 1.45564 1.84324 1.22484 0.89283 1.03626 0.95240 1.21870 1.00655 0.94275 0.91609 1.19697 0.85590 0.86585 0.85311 1.90498 1.43883 1.80085 1.31581 1.41867 1.49384 1.07397 1.21401 1.19757 1.32881 0.82240 1.07935 0.87820 1.25260 0.96784 1.00603 0.95291 1.69615 1.38043 1.35701 1.10960 0.85799 0.78223 0.81875 0.78448 1.19204 1.20769 1.20741 0.96589 0.88323 0.91927 0.94551 0.90267 0.90198 0.91123 0.76505 0.87051 0.86722 0.89266 0.89009 0.91051 0.90070 0.76465 0.88447 0.87163 0.93325 0.89315 0.77507 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.96 60.06 0.54 0.82 16 2 N -0.52 -7.98 4.50 -244.37 -1.10 -9.08 16 3 C 0.04 0.47 5.07 -3.83 -0.02 0.45 16 4 C 0.12 1.23 5.60 -4.04 -0.02 1.21 16 5 N -0.72 -5.09 5.56 -60.30 -0.33 -5.43 16 6 C 0.48 3.81 7.15 -10.99 -0.08 3.73 16 7 O -0.54 -6.41 11.65 5.56 0.06 -6.34 16 8 C 0.03 0.15 5.84 -4.98 -0.03 0.12 16 9 N -0.51 -3.39 4.95 -237.54 -1.17 -4.57 16 10 C 0.01 0.07 4.91 -3.67 -0.02 0.05 16 11 C 0.12 0.62 7.39 -4.31 -0.03 0.59 16 12 N -0.72 -5.62 5.52 -61.05 -0.34 -5.96 16 13 C 0.53 5.76 7.81 -11.68 -0.09 5.67 16 14 O -0.56 -8.21 17.82 5.56 0.10 -8.11 16 15 C 0.02 0.21 5.35 -5.19 -0.03 0.18 16 16 C 0.05 0.79 5.45 -4.97 -0.03 0.76 16 17 C 0.44 10.13 7.47 -10.99 -0.08 10.04 16 18 O -0.58 -15.19 13.91 5.54 0.08 -15.12 16 19 N -0.56 -13.92 5.29 -10.96 -0.06 -13.98 16 20 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 21 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.09 13.05 55.50 0.72 -23.37 16 24 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.10 1.91 5.83 -51.93 -0.30 1.60 16 30 H 0.06 0.88 6.47 -51.93 -0.34 0.55 16 31 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 32 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.83 6.55 -51.93 -0.34 0.49 16 35 H 0.40 1.58 8.47 -40.82 -0.35 1.23 16 36 H 0.11 0.32 8.12 -51.93 -0.42 -0.10 16 37 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.09 0.84 5.51 -51.93 -0.29 0.55 16 39 H 0.09 0.44 8.06 -51.93 -0.42 0.02 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.40 2.66 8.84 -40.82 -0.36 2.30 16 43 H 0.10 1.04 5.79 -51.93 -0.30 0.74 16 44 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 46 H 0.09 1.31 7.93 -51.93 -0.41 0.90 16 47 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 48 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 387.28 15.07 5.84 5.84 Total: -1.00 -35.98 387.28 -8.51 -44.49 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -7.15 Total: 10.07 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: -0.13 Total: 15.80 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -2.28 Total: -62.38 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: 0.24 Total: -29.57 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.98 -8.51 -44.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663249759.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.383 kcal (2) G-P(sol) polarization free energy of solvation -35.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds