Wall clock time and date at job start Wed Apr 1 2020 00:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46898 * 111.00416 * 2 1 4 4 C 1.52995 * 109.47081 * 66.04808 * 3 2 1 5 5 N 1.46505 * 109.47061 * 180.02562 * 4 3 2 6 6 C 1.34776 * 119.99973 * 179.97438 * 5 4 3 7 7 O 1.21277 * 120.00059 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00026 * 179.97438 * 6 5 4 9 9 N 1.46900 * 109.47511 * 180.02562 * 8 6 5 10 10 C 1.47185 * 110.99887 * 56.83974 * 9 8 6 11 11 C 1.52992 * 108.71825 * 167.62440 * 10 9 8 12 12 N 1.46018 * 110.03907 * 50.30733 * 11 10 9 13 13 C 1.33714 * 122.92358 * 341.83961 * 12 11 10 14 14 O 1.21278 * 118.61847 * 181.68683 * 13 12 11 15 15 C 1.46909 * 110.99602 * 293.95244 * 9 8 6 16 16 C 1.46905 * 111.00052 * 236.04150 * 2 1 3 17 17 C 1.50700 * 109.47318 * 293.95850 * 16 2 1 18 18 O 1.21297 * 119.99744 * 359.97438 * 17 16 2 19 19 N 1.34775 * 119.99896 * 179.97438 * 17 16 2 20 20 C 1.37099 * 119.99978 * 180.02562 * 19 17 16 21 21 H 1.08009 * 119.99699 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00348 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99876 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00199 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47166 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47159 * 120.00239 * 24 22 20 27 27 H 1.48499 * 109.47100 * 239.99836 * 24 22 20 28 28 H 1.09002 * 109.47028 * 59.99830 * 1 2 3 29 29 H 1.09000 * 109.47637 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46765 * 300.00291 * 1 2 3 31 31 H 1.09000 * 109.46915 * 306.04461 * 3 2 1 32 32 H 1.09003 * 109.47369 * 186.04755 * 3 2 1 33 33 H 1.09000 * 109.47529 * 60.00030 * 4 3 2 34 34 H 1.09000 * 109.47102 * 299.99684 * 4 3 2 35 35 H 0.96998 * 119.99759 * 0.02562 * 5 4 3 36 36 H 1.09000 * 109.47110 * 59.99891 * 8 6 5 37 37 H 1.09003 * 109.47140 * 300.00205 * 8 6 5 38 38 H 1.08996 * 109.59827 * 287.41046 * 10 9 8 39 39 H 1.09007 * 109.59444 * 47.86678 * 10 9 8 40 40 H 1.09003 * 109.37746 * 290.13187 * 11 10 9 41 41 H 1.09003 * 109.37887 * 170.47797 * 11 10 9 42 42 H 0.96997 * 118.53285 * 162.12828 * 12 11 10 43 43 H 1.09000 * 109.38197 * 53.50775 * 15 9 8 44 44 H 1.08999 * 109.38491 * 293.82036 * 15 9 8 45 45 H 1.09001 * 109.46663 * 53.95594 * 16 2 1 46 46 H 1.09000 * 109.47472 * 173.95667 * 16 2 1 47 47 H 0.97001 * 120.00169 * 0.02562 * 19 17 16 48 48 H 0.97001 * 120.00398 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 1.3182 5 7 2.1562 3.4253 1.3180 6 6 1.9548 4.2244 2.3844 7 8 1.3398 3.8110 3.3444 8 6 2.4949 5.6313 2.3844 9 7 2.1455 6.2900 3.6500 10 6 2.6524 5.5247 4.8006 11 6 2.5394 6.3924 6.0556 12 7 1.1925 6.9462 6.1614 13 6 0.3477 7.0053 5.1266 14 8 -0.7424 7.5097 5.2947 15 6 0.6924 6.4736 3.7643 16 6 1.9954 -0.7661 -1.1376 17 6 1.6368 -2.2205 -0.9728 18 8 1.0052 -2.5833 -0.0029 19 7 2.0179 -3.1181 -1.9032 20 6 1.6912 -4.4411 -1.7536 21 1 1.1288 -4.7642 -0.8899 22 6 2.0845 -5.3666 -2.7124 23 7 2.7701 -4.9738 -3.7625 24 14 1.6401 -7.1694 -2.5082 25 1 0.8728 -7.3506 -1.2497 26 1 0.8129 -7.6089 -3.6605 27 1 2.8817 -7.9820 -2.4517 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.5612 1.9273 -0.8309 32 1 3.0798 1.3443 -0.1083 33 1 2.0659 1.5015 2.1492 34 1 0.5473 2.0845 1.4265 35 1 2.6478 3.7560 0.5500 36 1 2.0610 6.1870 1.5532 37 1 3.5793 5.6042 2.2766 38 1 2.0592 4.6192 4.9273 39 1 3.6964 5.2600 4.6321 40 1 3.2618 7.2067 5.9986 41 1 2.7507 5.7848 6.9356 42 1 0.8990 7.2901 7.0195 43 1 0.1938 5.5162 3.6128 44 1 0.3560 7.1791 3.0046 45 1 1.5610 -0.3873 -2.0628 46 1 3.0797 -0.6613 -1.1756 47 1 2.5233 -2.8280 -2.6786 48 1 3.0450 -5.6199 -4.4317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663249759.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:35 Heat of formation + Delta-G solvation = -111.178256 kcal Electronic energy + Delta-G solvation = -29165.691418 eV Core-core repulsion = 24868.941854 eV Total energy + Delta-G solvation = -4296.749564 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.80264 -40.62473 -40.32183 -38.42663 -37.74165 -36.03477 -35.61803 -35.36873 -33.27516 -31.29223 -30.77846 -29.62365 -28.87916 -27.03925 -25.95484 -24.97256 -23.96511 -22.32226 -21.51829 -20.95744 -20.33489 -19.85387 -18.66332 -18.07800 -17.90121 -17.66538 -17.30397 -16.88937 -16.75681 -16.54864 -16.29247 -16.12017 -15.79895 -15.64030 -15.39046 -15.28906 -14.98710 -14.71729 -14.55888 -14.31289 -13.78663 -13.73855 -13.55905 -13.44717 -13.04526 -12.95770 -12.75860 -12.58164 -12.55917 -12.43840 -12.39478 -12.31269 -12.12698 -12.03165 -11.55889 -11.46259 -11.09447 -10.29356 -10.15164 -10.06093 -9.98844 -9.39044 -9.24434 -8.46294 -5.94366 1.36397 1.42028 1.48690 1.55597 1.57789 2.02865 2.06948 2.28643 2.31089 2.67057 2.91690 3.20931 3.42562 3.54923 3.78638 3.88018 3.91777 4.03190 4.08166 4.25477 4.35796 4.41859 4.44551 4.47260 4.48563 4.53192 4.57052 4.62510 4.63284 4.65981 4.79761 4.86893 4.95506 5.09217 5.19861 5.41682 5.42695 5.56092 5.61758 5.85003 5.85882 6.04542 6.17399 6.22011 6.54520 6.62138 7.11069 7.14594 7.24985 7.58199 8.14707 8.71203 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.032311 B = 0.001527 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.361504 B =18329.570923 C =18489.226859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.540 5.540 3 C 0.052 3.948 4 C 0.130 3.870 5 N -0.710 5.710 6 C 0.475 3.525 7 O -0.582 6.582 8 C 0.037 3.963 9 N -0.500 5.500 10 C 0.010 3.990 11 C 0.114 3.886 12 N -0.712 5.712 13 C 0.521 3.479 14 O -0.608 6.608 15 C 0.031 3.969 16 C 0.061 3.939 17 C 0.439 3.561 18 O -0.617 6.617 19 N -0.574 5.574 20 C -0.332 4.332 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.990 3.010 25 H -0.276 1.276 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.035 0.965 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.420 0.580 36 H 0.137 0.863 37 H 0.149 0.851 38 H 0.058 0.942 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.404 0.596 43 H 0.076 0.924 44 H 0.120 0.880 45 H 0.073 0.927 46 H 0.116 0.884 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.365 26.744 8.686 29.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.265 5.265 3 C -0.076 4.076 4 C 0.005 3.995 5 N -0.363 5.363 6 C 0.262 3.738 7 O -0.463 6.463 8 C -0.094 4.094 9 N -0.224 5.224 10 C -0.118 4.118 11 C -0.009 4.009 12 N -0.362 5.362 13 C 0.309 3.691 14 O -0.490 6.490 15 C -0.100 4.100 16 C -0.070 4.070 17 C 0.226 3.774 18 O -0.503 6.503 19 N -0.212 5.212 20 C -0.461 4.461 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.196 1.196 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.258 0.742 36 H 0.154 0.846 37 H 0.166 0.834 38 H 0.077 0.923 39 H 0.133 0.867 40 H 0.110 0.890 41 H 0.118 0.882 42 H 0.240 0.760 43 H 0.094 0.906 44 H 0.138 0.862 45 H 0.090 0.910 46 H 0.134 0.866 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.524 26.521 10.162 29.141 hybrid contribution -0.794 -1.421 -1.013 1.917 sum 5.730 25.100 9.149 27.323 Atomic orbital electron populations 1.22441 0.87073 1.02277 1.00459 1.61333 1.08731 1.13401 1.43027 1.22269 1.01906 0.87217 0.96180 1.21031 0.98412 0.82200 0.97864 1.45932 1.57075 1.12988 1.20318 1.22722 0.79384 0.89825 0.81881 1.90667 1.43238 1.76929 1.35435 1.22641 1.05278 0.87296 0.94204 1.63057 1.10303 1.46301 1.02709 1.22918 1.03025 0.95993 0.89885 1.21743 0.82100 0.98337 0.98715 1.45591 1.16197 1.61946 1.12482 1.20436 0.83554 0.77433 0.87705 1.90739 1.24870 1.48091 1.85262 1.22351 0.90733 1.02538 0.94358 1.21737 1.02401 0.89810 0.93060 1.20867 0.83690 0.88979 0.83838 1.90481 1.45223 1.81522 1.33096 1.41926 1.50087 1.06981 1.22193 1.19669 1.34312 0.84178 1.07976 0.90525 1.25979 0.96312 1.04128 0.94728 1.69664 1.38110 1.37037 1.11224 0.84906 0.78243 0.77227 0.78170 1.20040 1.19635 1.19608 0.94695 0.92702 0.91055 0.92129 0.88124 0.92836 0.93033 0.74236 0.84557 0.83377 0.92348 0.86685 0.88994 0.88156 0.75954 0.90584 0.86190 0.90965 0.86561 0.76920 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 8.96 127.69 1.14 1.94 16 2 N -0.54 -16.00 4.50 -927.06 -4.17 -20.17 16 3 C 0.05 0.95 5.07 86.30 0.44 1.39 16 4 C 0.13 2.52 5.60 86.38 0.48 3.01 16 5 N -0.71 -8.19 5.56 -463.07 -2.57 -10.77 16 6 C 0.47 6.71 7.15 87.66 0.63 7.34 16 7 O -0.58 -13.90 11.65 -3.02 -0.04 -13.93 16 8 C 0.04 0.22 5.84 85.56 0.50 0.72 16 9 N -0.50 -5.60 4.95 -905.45 -4.48 -10.07 16 10 C 0.01 0.11 4.91 86.25 0.42 0.53 16 11 C 0.11 0.98 7.39 86.47 0.64 1.62 16 12 N -0.71 -10.69 5.52 -466.06 -2.57 -13.26 16 13 C 0.52 11.47 7.81 87.68 0.69 12.15 16 14 O -0.61 -18.71 17.82 -3.02 -0.05 -18.76 16 15 C 0.03 0.53 5.35 85.41 0.46 0.99 16 16 C 0.06 1.93 5.45 85.56 0.47 2.39 16 17 C 0.44 20.29 7.47 87.66 0.66 20.94 16 18 O -0.62 -33.74 13.91 -3.08 -0.04 -33.78 16 19 N -0.57 -28.75 5.29 -306.98 -1.62 -30.37 16 20 C -0.33 -18.64 9.68 84.04 0.81 -17.83 16 21 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 22 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 23 N -0.92 -48.69 13.05 21.66 0.28 -48.40 16 24 Si 0.99 42.65 29.55 68.60 2.03 44.67 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 28 H 0.03 0.92 8.14 -2.39 -0.02 0.91 16 29 H 0.05 2.20 5.83 -2.39 -0.01 2.19 16 30 H 0.07 2.04 6.47 -2.39 -0.02 2.02 16 31 H 0.06 0.88 8.12 -2.39 -0.02 0.86 16 32 H 0.10 1.46 7.93 -2.39 -0.02 1.44 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.20 6.55 -2.39 -0.02 1.19 16 35 H 0.42 1.61 8.47 -92.71 -0.79 0.83 16 36 H 0.14 0.22 8.12 -2.39 -0.02 0.20 16 37 H 0.15 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.06 1.09 5.51 -2.39 -0.01 1.07 16 39 H 0.12 0.74 8.06 -2.38 -0.02 0.73 16 40 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.10 0.50 8.14 -2.39 -0.02 0.49 16 42 H 0.40 5.24 8.84 -92.71 -0.82 4.42 16 43 H 0.08 1.69 5.79 -2.39 -0.01 1.67 16 44 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.07 1.98 8.12 -2.39 -0.02 1.96 16 46 H 0.12 3.07 7.93 -2.39 -0.02 3.05 16 47 H 0.40 18.65 7.90 -92.71 -0.73 17.91 16 48 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -83.37 387.28 -6.75 -90.13 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: -1.31 Total: 29.69 kcal Atomic # 6 Polarization: 27.23 SS G_CDS: 7.80 Total: 35.03 kcal Atomic # 7 Polarization: -117.91 SS G_CDS: -15.13 Total: -133.05 kcal Atomic # 8 Polarization: -66.34 SS G_CDS: -0.13 Total: -66.48 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -83.37 -6.75 -90.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663249759.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.052 kcal (2) G-P(sol) polarization free energy of solvation -83.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds