Wall clock time and date at job start Wed Apr 1 2020 00:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46502 * 120.00330 * 2 1 4 4 C 1.52998 * 109.46894 * 269.99819 * 3 2 1 5 5 H 1.09001 * 112.95610 * 285.32763 * 4 3 2 6 6 C 1.53936 * 113.75553 * 153.68736 * 4 3 2 7 7 C 1.53940 * 86.33775 * 221.95830 * 6 4 3 8 8 N 1.47957 * 113.75909 * 56.97894 * 4 3 2 9 9 C 1.46904 * 110.99980 * 251.89516 * 8 4 3 10 10 C 1.50695 * 109.47167 * 170.00041 * 9 8 4 11 11 O 1.21296 * 120.00143 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99957 * 180.02562 * 10 9 8 13 13 C 1.37103 * 119.99879 * 180.02562 * 12 10 9 14 14 H 1.07998 * 119.99854 * 0.02562 * 13 12 10 15 15 C 1.38942 * 119.99939 * 180.02562 * 13 12 10 16 16 N 1.31416 * 120.00350 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00236 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46770 * 89.99733 * 17 15 13 19 19 H 1.48499 * 109.47406 * 209.99835 * 17 15 13 20 20 H 1.48500 * 109.46882 * 330.00288 * 17 15 13 21 21 C 1.34775 * 119.99983 * 179.97438 * 2 1 3 22 22 O 1.21288 * 120.00399 * 174.13866 * 21 2 1 23 23 C 1.50702 * 120.00072 * 354.13717 * 21 2 1 24 24 C 1.53002 * 115.54932 * 76.84370 * 23 21 2 25 25 C 1.52998 * 109.47157 * 40.33873 * 24 23 21 26 26 F 1.39899 * 109.47008 * 185.54146 * 25 24 23 27 27 C 1.52996 * 117.52039 * 222.54238 * 23 21 2 28 28 C 1.52996 * 60.00043 * 107.48277 * 27 23 21 29 29 H 1.09000 * 109.47695 * 272.06707 * 1 2 3 30 30 H 1.09003 * 109.47085 * 32.07063 * 1 2 3 31 31 H 1.08999 * 109.47301 * 152.06392 * 1 2 3 32 32 H 1.08999 * 109.46822 * 29.99825 * 3 2 1 33 33 H 1.09000 * 109.46967 * 149.99382 * 3 2 1 34 34 H 1.09000 * 113.73573 * 336.31775 * 6 4 3 35 35 H 1.09001 * 113.73879 * 107.60446 * 6 4 3 36 36 H 1.09001 * 113.75836 * 138.03591 * 7 6 4 37 37 H 1.09000 * 113.76226 * 269.39963 * 7 6 4 38 38 H 1.08998 * 109.47305 * 290.00391 * 9 8 4 39 39 H 1.09004 * 109.46576 * 50.00114 * 9 8 4 40 40 H 0.96995 * 119.99944 * 359.97438 * 12 10 9 41 41 H 0.96996 * 120.00688 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.47232 * 160.34447 * 24 23 21 43 43 H 1.09009 * 109.46874 * 280.34096 * 24 23 21 44 44 H 1.09002 * 109.47244 * 305.53699 * 25 24 23 45 45 H 1.08989 * 109.47260 * 65.53895 * 25 24 23 46 46 H 1.09008 * 117.50225 * 214.96994 * 27 23 21 47 47 H 1.09000 * 117.49955 * 359.97438 * 27 23 21 48 48 H 1.08999 * 117.49881 * 252.51424 * 28 27 23 49 49 H 1.08998 * 117.50430 * 107.49200 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 1 3.2366 1.1323 -1.9317 6 6 2.6105 3.2327 -1.6062 7 6 1.7449 3.0871 -2.8709 8 7 1.2207 1.8476 -2.2505 9 6 1.1161 0.7658 -3.2389 10 6 -0.2520 0.7927 -3.8702 11 8 -1.0602 1.6309 -3.5306 12 7 -0.5774 -0.1146 -4.8122 13 6 -1.8219 -0.0898 -5.3869 14 1 -2.5412 0.6571 -5.0851 15 6 -2.1576 -1.0255 -6.3576 16 7 -1.2821 -1.9340 -6.7252 17 14 -3.8534 -0.9922 -7.1403 18 1 -3.8264 -0.1215 -8.3430 19 1 -4.2437 -2.3695 -7.5349 20 1 -4.8382 -0.4587 -6.1651 21 6 2.1388 -1.1672 0.0005 22 8 3.3469 -1.1701 -0.1067 23 6 1.3912 -2.4688 0.1344 24 6 0.6736 -2.9505 -1.1281 25 6 1.5589 -2.6907 -2.3485 26 9 0.8542 -3.0137 -3.5131 27 6 1.9852 -3.5333 1.0590 28 6 0.7293 -2.7681 1.4809 29 1 -0.3634 0.0371 1.0270 30 1 -0.3633 0.8709 -0.5457 31 1 -0.3634 -0.9079 -0.4814 32 1 1.6084 2.0283 0.5138 33 1 3.1498 1.1383 0.5139 34 1 2.1355 3.8109 -0.8136 35 1 3.6338 3.5484 -1.8091 36 1 0.9977 3.8725 -2.9844 37 1 2.3208 2.9118 -3.7795 38 1 1.8747 0.9030 -4.0095 39 1 1.2695 -0.1937 -2.7448 40 1 0.0691 -0.7847 -5.0840 41 1 -1.5163 -2.5870 -7.4032 42 1 0.4718 -4.0186 -1.0463 43 1 -0.2668 -2.4106 -1.2398 44 1 1.8415 -1.6383 -2.3750 45 1 2.4560 -3.3063 -2.2843 46 1 1.8646 -4.5769 0.7679 47 1 2.9172 -3.2925 1.5703 48 1 0.8349 -2.0237 2.2701 49 1 -0.2175 -3.3081 1.4675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691648607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:13 Heat of formation + Delta-G solvation = -49.913311 kcal Electronic energy + Delta-G solvation = -32633.605907 eV Core-core repulsion = 28319.593029 eV Total energy + Delta-G solvation = -4314.012878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -47.21091 -40.72999 -39.65376 -37.67117 -36.95660 -35.36664 -33.80848 -31.58270 -31.18261 -30.54294 -29.03922 -26.53385 -25.68861 -24.55254 -23.71124 -23.43566 -22.66275 -21.77145 -19.59745 -19.19572 -18.59812 -17.79965 -16.74699 -16.56856 -16.43096 -16.01458 -15.70089 -15.63167 -15.28111 -14.91188 -14.53614 -14.37565 -14.28416 -14.02841 -13.76412 -13.68267 -13.34060 -13.13352 -12.70934 -12.57409 -12.31884 -12.30476 -12.05895 -11.75950 -11.58916 -11.56878 -11.49873 -11.30831 -11.25741 -11.01281 -10.83587 -10.76929 -10.60719 -10.37936 -10.33012 -10.13535 -10.06535 -9.68016 -9.41976 -8.91499 -8.41517 -8.08516 -7.86863 -6.31828 -3.73216 2.50885 2.88889 3.21659 3.30018 3.35499 3.45336 3.94427 3.99563 4.21207 4.27464 4.38002 4.57618 4.60272 4.65518 4.83999 4.89619 5.06454 5.08040 5.13367 5.15280 5.29547 5.32250 5.33348 5.38710 5.41932 5.50505 5.53399 5.62472 5.65262 5.70638 5.72708 5.76005 5.82242 5.82777 5.86468 5.88693 5.99860 6.10364 6.25112 6.29308 6.37259 6.49880 6.66573 7.23486 7.39284 7.62284 8.12557 8.14118 8.70856 9.26420 9.64330 10.15945 10.85005 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.010417 B = 0.004625 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.159647 B = 6053.139944 C = 7792.071684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.597 5.597 3 C 0.139 3.861 4 C 0.006 3.994 5 H 0.079 0.921 6 C -0.136 4.136 7 C 0.010 3.990 8 N -0.438 5.438 9 C 0.007 3.993 10 C 0.445 3.555 11 O -0.579 6.579 12 N -0.561 5.561 13 C -0.299 4.299 14 H 0.101 0.899 15 C 0.024 3.976 16 N -0.894 5.894 17 Si 0.926 3.074 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.547 3.453 22 O -0.541 6.541 23 C -0.155 4.155 24 C -0.111 4.111 25 C 0.058 3.942 26 F -0.198 7.198 27 C -0.144 4.144 28 C -0.155 4.155 29 H 0.050 0.950 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.082 0.918 40 H 0.392 0.608 41 H 0.270 0.730 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.104 0.896 47 H 0.101 0.899 48 H 0.098 0.902 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.448 0.130 15.516 17.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.328 5.328 3 C 0.016 3.984 4 C -0.105 4.105 5 H 0.097 0.903 6 C -0.174 4.174 7 C -0.119 4.119 8 N -0.161 5.161 9 C -0.124 4.124 10 C 0.230 3.770 11 O -0.463 6.463 12 N -0.198 5.198 13 C -0.429 4.429 14 H 0.119 0.881 15 C -0.178 4.178 16 N -0.535 5.535 17 Si 0.754 3.246 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.195 1.195 21 C 0.335 3.665 22 O -0.419 6.419 23 C -0.158 4.158 24 C -0.149 4.149 25 C 0.003 3.997 26 F -0.179 7.179 27 C -0.181 4.181 28 C -0.193 4.193 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.226 0.774 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.123 0.877 47 H 0.119 0.881 48 H 0.117 0.883 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.832 0.521 15.823 17.663 hybrid contribution 0.211 -0.681 -1.335 1.514 sum 8.043 -0.161 14.488 16.571 Atomic orbital electron populations 1.22093 0.78196 1.05428 1.01419 1.47686 1.07758 1.05174 1.72187 1.21410 0.97205 0.84673 0.95106 1.23950 0.93597 0.96664 0.96315 0.90348 1.23353 1.00133 0.94956 0.99000 1.23878 0.97278 0.95122 0.95618 1.68346 1.30276 1.02045 1.15386 1.22614 0.97823 0.96638 0.95368 1.19594 0.88661 0.85019 0.83726 1.90505 1.51402 1.39522 1.64824 1.41884 1.15015 1.28545 1.34379 1.19636 0.90893 1.14568 1.17785 0.88105 1.25236 0.99374 0.95718 0.97463 1.69639 1.34947 1.17365 1.31544 0.85925 0.82117 0.77269 0.79336 1.20543 1.20993 1.19497 1.19552 0.87013 0.84142 0.75838 1.90684 1.14097 1.87193 1.49912 1.21287 1.04919 0.95804 0.93809 1.21780 0.99162 1.02926 0.91039 1.22016 0.94411 1.01726 0.81566 1.92924 1.80724 1.94381 1.49836 1.23074 0.97804 0.96476 1.00780 1.23077 0.97823 1.03148 0.95216 0.93160 0.88424 0.90835 0.89747 0.89880 0.89068 0.91126 0.89003 0.91657 0.93020 0.89965 0.77418 0.91988 0.89514 0.89138 0.91348 0.90773 0.87749 0.88063 0.88309 0.87601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.90 9.65 59.84 0.58 1.47 16 2 N -0.60 -7.58 2.80 -181.58 -0.51 -8.09 16 3 C 0.14 1.64 5.53 -4.04 -0.02 1.62 16 4 C 0.01 0.07 3.55 -66.66 -0.24 -0.16 16 5 H 0.08 1.10 7.92 -51.93 -0.41 0.69 16 6 C -0.14 -1.49 7.84 -25.79 -0.20 -1.70 16 7 C 0.01 0.14 7.96 -2.64 -0.02 0.12 16 8 N -0.44 -7.04 4.27 -231.12 -0.99 -8.03 16 9 C 0.01 0.14 5.28 -4.98 -0.03 0.11 16 10 C 0.45 10.63 7.83 -10.99 -0.09 10.55 16 11 O -0.58 -15.59 16.01 5.54 0.09 -15.50 16 12 N -0.56 -14.56 5.29 -10.97 -0.06 -14.62 16 13 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 14 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 15 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 16 N -0.89 -24.89 13.05 55.50 0.72 -24.16 16 17 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 C 0.55 7.44 5.11 -10.99 -0.06 7.38 16 22 O -0.54 -8.78 16.60 5.55 0.09 -8.69 16 23 C -0.15 -1.77 1.12 -155.66 -0.17 -1.95 16 24 C -0.11 -1.41 5.41 -26.73 -0.14 -1.55 16 25 C 0.06 0.87 7.18 37.16 0.27 1.13 16 26 F -0.20 -3.79 17.36 2.25 0.04 -3.75 16 27 C -0.14 -1.37 9.77 -26.74 -0.26 -1.63 16 28 C -0.16 -1.38 9.52 -26.73 -0.25 -1.63 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.10 1.48 7.19 -51.93 -0.37 1.11 16 31 H 0.07 0.97 4.61 -51.93 -0.24 0.73 16 32 H 0.08 0.88 7.80 -51.93 -0.41 0.47 16 33 H 0.08 0.96 7.51 -51.93 -0.39 0.57 16 34 H 0.09 0.91 7.92 -51.93 -0.41 0.49 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.07 0.92 7.48 -51.93 -0.39 0.53 16 38 H 0.05 0.93 7.38 -51.93 -0.38 0.55 16 39 H 0.08 1.49 5.04 -51.93 -0.26 1.22 16 40 H 0.39 10.10 7.90 -40.82 -0.32 9.78 16 41 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.09 0.96 7.95 -51.93 -0.41 0.54 16 43 H 0.09 1.24 6.09 -51.92 -0.32 0.92 16 44 H 0.07 1.10 3.93 -51.93 -0.20 0.90 16 45 H 0.07 1.00 8.14 -51.94 -0.42 0.58 16 46 H 0.10 0.85 8.09 -51.92 -0.42 0.43 16 47 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 396.46 15.07 5.97 5.97 Total: -1.00 -33.04 396.46 -7.95 -40.99 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -7.41 Total: 13.82 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -0.88 Total: 5.76 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.83 Total: -54.90 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: 0.18 Total: -24.19 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.04 Total: -3.75 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.04 -7.95 -40.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691648607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.928 kcal (2) G-P(sol) polarization free energy of solvation -33.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds