Wall clock time and date at job start Wed Apr 1 2020 00:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99873 * 2 1 4 4 C 1.53000 * 109.47404 * 270.00317 * 3 2 1 5 5 C 1.52994 * 109.47034 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.47301 * 180.02562 * 5 4 3 7 7 C 1.46896 * 111.00245 * 180.02562 * 6 5 4 8 8 C 1.50709 * 109.47029 * 179.97438 * 7 6 5 9 9 O 1.21292 * 120.00146 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00002 * 179.97438 * 8 7 6 11 11 C 1.37087 * 120.00064 * 179.97438 * 10 8 7 12 12 H 1.07999 * 120.00111 * 0.02562 * 11 10 8 13 13 C 1.38953 * 120.00294 * 179.97438 * 11 10 8 14 14 N 1.31407 * 120.00282 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99762 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47333 * 89.99392 * 15 13 11 17 17 H 1.48499 * 109.46939 * 209.99686 * 15 13 11 18 18 H 1.48508 * 109.47048 * 329.99283 * 15 13 11 19 19 C 1.34770 * 120.00062 * 180.02562 * 2 1 3 20 20 O 1.21604 * 120.00013 * 176.52065 * 19 2 1 21 21 C 1.47297 * 120.00066 * 356.52423 * 19 2 1 22 22 F 1.35101 * 120.00306 * 6.40739 * 21 19 2 23 23 C 1.33117 * 120.00282 * 186.40503 * 21 19 2 24 24 C 1.51443 * 126.33919 * 359.68767 * 23 21 19 25 25 C 1.54283 * 106.85355 * 180.24140 * 24 23 21 26 26 C 1.54984 * 103.65611 * 23.48327 * 25 24 23 27 27 C 1.51837 * 126.34212 * 179.97438 * 23 21 19 28 28 H 1.09002 * 109.47667 * 95.91588 * 1 2 3 29 29 H 1.09005 * 109.47122 * 215.91581 * 1 2 3 30 30 H 1.09004 * 109.47197 * 335.91490 * 1 2 3 31 31 H 1.09004 * 109.46959 * 30.00408 * 3 2 1 32 32 H 1.09004 * 109.46598 * 150.00175 * 3 2 1 33 33 H 1.08997 * 109.47315 * 300.00279 * 4 3 2 34 34 H 1.09003 * 109.46665 * 60.00049 * 4 3 2 35 35 H 1.09004 * 109.47062 * 299.99927 * 5 4 3 36 36 H 1.08998 * 109.47513 * 59.99676 * 5 4 3 37 37 H 1.00906 * 111.00320 * 56.03799 * 6 5 4 38 38 H 1.08999 * 109.47182 * 299.99393 * 7 6 5 39 39 H 1.08997 * 109.47468 * 59.99874 * 7 6 5 40 40 H 0.97000 * 119.99559 * 0.02562 * 10 8 7 41 41 H 0.97005 * 120.00013 * 180.02562 * 14 13 11 42 42 H 1.08996 * 109.98619 * 299.72829 * 24 23 21 43 43 H 1.09003 * 109.98741 * 61.02712 * 24 23 21 44 44 H 1.09003 * 110.79279 * 264.86114 * 25 24 23 45 45 H 1.08998 * 110.42845 * 141.93691 * 25 24 23 46 46 H 1.09002 * 110.82881 * 204.49200 * 26 25 24 47 47 H 1.08993 * 110.83525 * 80.91505 * 26 25 24 48 48 H 1.09007 * 110.43977 * 274.92565 * 27 23 21 49 49 H 1.08993 * 110.44774 * 37.32411 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2180 3.0352 -1.4424 6 7 3.4622 3.4597 -2.8273 7 6 4.1975 4.7309 -2.8664 8 6 4.4295 5.1330 -4.3002 9 8 4.0229 4.4297 -5.2008 10 7 5.0889 6.2743 -4.5817 11 6 5.3005 6.6398 -5.8859 12 1 4.9384 6.0136 -6.6878 13 6 5.9798 7.8167 -6.1761 14 7 6.1822 8.1674 -7.4263 15 14 6.6055 8.9003 -4.7891 16 1 7.9838 8.4874 -4.4216 17 1 6.6152 10.3171 -5.2338 18 1 5.7149 8.7579 -3.6093 19 6 2.1389 -1.1671 -0.0005 20 8 3.3532 -1.1681 -0.0644 21 6 1.4045 -2.4416 0.0762 22 9 0.0548 -2.4483 0.0166 23 6 2.0705 -3.5870 0.2043 24 6 3.5747 -3.7470 0.2784 25 6 3.8576 -5.2573 0.4173 26 6 2.5920 -5.9231 -0.1802 27 6 1.4632 -4.9756 0.2971 28 1 -0.3634 -0.1059 -1.0222 29 1 -0.3633 -0.8323 0.6028 30 1 -0.3634 0.9382 0.4194 31 1 1.6084 2.0284 0.5139 32 1 3.1499 1.1383 0.5138 33 1 3.0415 0.9510 -1.9564 34 1 1.5000 1.8409 -1.9562 35 1 2.6292 3.7950 -0.9283 36 1 4.1704 2.9045 -0.9287 37 1 2.5976 3.5257 -3.3432 38 1 3.6161 5.5025 -2.3618 39 1 5.1569 4.6113 -2.3631 40 1 5.4145 6.8365 -3.8614 41 1 6.6568 8.9888 -7.6289 42 1 4.0355 -3.3617 -0.6311 43 1 3.9635 -3.2158 1.1472 44 1 3.9775 -5.5338 1.4649 45 1 4.7425 -5.5329 -0.1563 46 1 2.4535 -6.9256 0.2248 47 1 2.6439 -5.9474 -1.2686 48 1 1.1859 -5.2018 1.3268 49 1 0.5947 -5.0557 -0.3565 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754364967.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:19 Heat of formation + Delta-G solvation = -95.948053 kcal Electronic energy + Delta-G solvation = -28800.547448 eV Core-core repulsion = 24484.538354 eV Total energy + Delta-G solvation = -4316.009094 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.44723 -40.25784 -38.52813 -38.38339 -36.63142 -35.47654 -33.91124 -32.19881 -31.66159 -31.43024 -29.29681 -27.87780 -27.18210 -25.90772 -24.47301 -23.23277 -21.77892 -21.36530 -20.66326 -19.34138 -19.11483 -18.30314 -17.66382 -17.01784 -16.70530 -16.30449 -16.09482 -15.82283 -15.65208 -15.14753 -15.10455 -14.85949 -14.35935 -14.14145 -13.90881 -13.78930 -13.61574 -13.46528 -13.13652 -12.99447 -12.75170 -12.68279 -12.35305 -12.17982 -12.11354 -11.89185 -11.76032 -11.74098 -11.60507 -11.53353 -11.41237 -11.14534 -11.07313 -10.79134 -10.57916 -10.13380 -9.95601 -9.55209 -9.41860 -8.91841 -8.55996 -8.16964 -8.09915 -6.29059 -3.80355 0.73939 2.48986 2.68378 3.03893 3.08703 3.16361 3.65694 3.76366 3.76974 4.11135 4.14920 4.16235 4.53012 4.56230 4.69531 4.78836 4.79795 4.85018 4.94005 5.03067 5.07616 5.13361 5.22626 5.24016 5.26324 5.31160 5.37462 5.41164 5.44139 5.49880 5.54895 5.61052 5.64583 5.65256 5.69921 5.83623 5.84633 5.94637 5.95694 6.02833 6.11098 6.28038 6.93726 7.14178 7.60052 7.62107 7.67918 8.16903 8.62275 8.97263 9.44733 9.85503 10.84122 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.021033 B = 0.001608 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.920957 B =17405.060653 C =17918.275938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.607 5.607 3 C 0.118 3.882 4 C -0.132 4.132 5 C 0.064 3.936 6 N -0.669 5.669 7 C 0.049 3.951 8 C 0.450 3.550 9 O -0.564 6.564 10 N -0.591 5.591 11 C -0.305 4.305 12 H 0.119 0.881 13 C 0.041 3.959 14 N -0.882 5.882 15 Si 0.880 3.120 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.270 1.270 19 C 0.549 3.451 20 O -0.514 6.514 21 C -0.014 4.014 22 F -0.132 7.132 23 C -0.070 4.070 24 C -0.082 4.082 25 C -0.129 4.129 26 C -0.123 4.123 27 C -0.097 4.097 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.026 0.974 36 H 0.073 0.927 37 H 0.350 0.650 38 H 0.044 0.956 39 H 0.087 0.913 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.090 0.910 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.612 -23.531 23.870 35.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.339 5.339 3 C -0.004 4.004 4 C -0.171 4.171 5 C -0.066 4.066 6 N -0.302 5.302 7 C -0.084 4.084 8 C 0.236 3.764 9 O -0.446 6.446 10 N -0.231 5.231 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.522 5.522 15 Si 0.707 3.293 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.195 1.195 19 C 0.337 3.663 20 O -0.392 6.392 21 C -0.036 4.036 22 F -0.110 7.110 23 C -0.073 4.073 24 C -0.118 4.118 25 C -0.166 4.166 26 C -0.161 4.161 27 C -0.133 4.133 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.169 0.831 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.113 0.887 43 H 0.106 0.894 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.093 0.907 47 H 0.092 0.908 48 H 0.109 0.891 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.648 -24.197 22.984 35.030 hybrid contribution -0.596 1.856 1.146 2.262 sum -11.244 -22.340 24.130 34.753 Atomic orbital electron populations 1.22456 0.78730 1.04438 1.03110 1.47742 1.07530 1.05852 1.72812 1.21547 0.97728 0.83598 0.97570 1.21894 1.00856 0.98057 0.96322 1.21852 0.99570 0.94984 0.90209 1.60005 1.27505 1.30691 1.11985 1.21702 0.99575 0.90649 0.96491 1.19734 0.83848 0.82955 0.89900 1.90565 1.53619 1.52880 1.47537 1.42201 1.51835 1.20912 1.08126 1.19439 1.34302 1.06867 0.82767 0.86297 1.25038 0.97500 0.97156 0.96492 1.69623 1.41055 1.24476 1.17040 0.86661 0.79766 0.81069 0.81817 1.19587 1.20207 1.19549 1.18150 0.87253 0.83247 0.77632 1.90848 1.12425 1.86393 1.49497 1.18794 0.76923 0.93870 1.14005 1.91353 1.28679 1.96571 1.94444 1.23081 0.98391 0.93460 0.92349 1.21195 0.89859 0.96398 1.04395 1.22482 0.98236 0.94495 1.01395 1.22539 0.94044 0.98313 1.01189 1.21527 0.98845 0.90308 1.02664 0.92187 0.88709 0.90976 0.90294 0.89503 0.90255 0.91822 0.95561 0.90866 0.83078 0.93812 0.89442 0.79690 0.91639 0.88651 0.89414 0.91143 0.90709 0.90670 0.90797 0.89137 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.39 9.58 59.85 0.57 0.96 16 2 N -0.61 -5.80 2.87 -182.89 -0.53 -6.33 16 3 C 0.12 1.09 5.42 -4.04 -0.02 1.07 16 4 C -0.13 -1.48 5.80 -26.73 -0.16 -1.63 16 5 C 0.06 0.77 5.68 -3.83 -0.02 0.75 16 6 N -0.67 -10.89 6.12 -115.06 -0.70 -11.59 16 7 C 0.05 0.83 6.17 -4.97 -0.03 0.80 16 8 C 0.45 10.52 7.82 -10.98 -0.09 10.44 16 9 O -0.56 -15.62 15.78 5.55 0.09 -15.53 16 10 N -0.59 -14.40 5.09 -10.96 -0.06 -14.45 16 11 C -0.31 -8.79 10.16 -14.94 -0.15 -8.95 16 12 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16 13 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 14 N -0.88 -26.07 13.96 55.50 0.77 -25.29 16 15 Si 0.88 19.60 27.74 -169.99 -4.71 14.89 16 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 19 C 0.55 6.15 7.61 -12.58 -0.10 6.06 16 20 O -0.51 -7.00 13.77 5.27 0.07 -6.92 16 21 C -0.01 -0.13 7.17 -37.68 -0.27 -0.40 16 22 F -0.13 -1.14 13.23 2.25 0.03 -1.11 16 23 C -0.07 -0.58 6.16 -100.20 -0.62 -1.20 16 24 C -0.08 -0.66 4.83 -26.85 -0.13 -0.79 16 25 C -0.13 -0.73 6.88 -25.01 -0.17 -0.90 16 26 C -0.12 -0.63 6.95 -24.67 -0.17 -0.80 16 27 C -0.10 -0.57 6.45 -26.31 -0.17 -0.74 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.62 5.32 -51.93 -0.28 0.35 16 30 H 0.07 0.38 7.83 -51.93 -0.41 -0.03 16 31 H 0.08 0.55 7.86 -51.93 -0.41 0.14 16 32 H 0.09 0.87 7.47 -51.93 -0.39 0.49 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.35 5.84 8.43 -39.29 -0.33 5.51 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.37 7.89 5.76 -40.82 -0.24 7.66 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.10 0.93 7.54 -51.93 -0.39 0.53 16 43 H 0.09 0.76 7.83 -51.93 -0.41 0.36 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 401.04 15.07 6.04 6.04 Total: -1.00 -34.65 401.04 -8.50 -43.15 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -7.89 Total: 11.43 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -1.62 Total: 5.71 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.51 Total: -57.67 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: 0.16 Total: -22.46 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.03 Total: -1.11 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.89 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.65 -8.50 -43.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754364967.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.793 kcal (2) G-P(sol) polarization free energy of solvation -34.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds