Wall clock time and date at job start Wed Apr 1 2020 00:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34221 * 116.99935 * 2 1 4 4 O 1.20830 * 120.00349 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00007 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47175 * 185.80376 * 5 3 2 7 7 C 1.52998 * 109.61808 * 298.26528 * 6 5 3 8 8 N 1.46496 * 109.47176 * 305.58532 * 7 6 5 9 9 C 1.34782 * 120.00111 * 174.79091 * 8 7 6 10 10 O 1.21287 * 119.99644 * 359.97438 * 9 8 7 11 11 C 1.50695 * 120.00186 * 179.97438 * 9 8 7 12 12 C 1.52995 * 109.47179 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47153 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47477 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47340 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00389 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99886 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00124 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99943 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47182 * 60.00268 * 19 17 15 21 21 H 1.48505 * 109.47270 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47352 * 300.00165 * 19 17 15 23 23 C 1.53182 * 109.54392 * 178.04527 * 6 5 3 24 24 C 1.53097 * 109.16086 * 297.11476 * 23 6 5 25 25 O 1.42909 * 109.41268 * 302.39184 * 24 23 6 26 26 C 1.42900 * 114.09874 * 61.16259 * 25 24 23 27 27 C 1.53090 * 109.41255 * 298.83730 * 26 25 24 28 28 H 1.08997 * 109.47401 * 59.99853 * 1 2 3 29 29 H 1.09002 * 109.46927 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46993 * 299.99537 * 1 2 3 31 31 H 1.09002 * 109.46754 * 65.81069 * 5 3 2 32 32 H 1.08996 * 109.47524 * 305.80800 * 5 3 2 33 33 H 1.09003 * 109.47058 * 65.58387 * 7 6 5 34 34 H 1.09002 * 109.47317 * 185.58007 * 7 6 5 35 35 H 0.96996 * 120.00176 * 354.77974 * 8 7 6 36 36 H 1.09004 * 109.46971 * 299.99738 * 11 9 8 37 37 H 1.09005 * 109.46979 * 59.99082 * 11 9 8 38 38 H 1.09000 * 109.47590 * 299.99545 * 12 11 9 39 39 H 1.08997 * 109.47200 * 59.99922 * 12 11 9 40 40 H 1.08995 * 109.47518 * 300.00449 * 13 12 11 41 41 H 1.09006 * 109.47239 * 60.00511 * 13 12 11 42 42 H 1.08995 * 109.47385 * 300.00863 * 14 13 12 43 43 H 1.09006 * 109.46197 * 60.00206 * 14 13 12 44 44 H 0.97003 * 119.99675 * 179.97438 * 18 17 15 45 45 H 1.08996 * 109.52122 * 57.01655 * 23 6 5 46 46 H 1.09000 * 109.52178 * 177.20988 * 23 6 5 47 47 H 1.08999 * 109.47661 * 182.40881 * 24 23 6 48 48 H 1.08999 * 109.49086 * 62.37774 * 24 23 6 49 49 H 1.09001 * 109.47925 * 178.85727 * 26 25 24 50 50 H 1.08996 * 109.49185 * 58.82586 * 26 25 24 51 51 H 1.09004 * 109.52778 * 297.70337 * 27 26 25 52 52 H 1.09002 * 109.52434 * 177.51323 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0005 2.7347 0.1463 7 6 3.4856 3.5451 -1.0449 8 7 3.9288 2.9161 -2.2915 9 6 3.5052 3.3977 -3.4770 10 8 2.7567 4.3514 -3.5116 11 6 3.9615 2.7511 -4.7594 12 6 3.3398 3.4842 -5.9496 13 6 3.8036 2.8281 -7.2517 14 6 3.1813 3.5609 -8.4420 15 6 3.6377 2.9143 -9.7243 16 1 4.3045 2.0653 -9.6936 17 6 3.2039 3.4065 -10.9370 18 7 2.3923 4.4407 -10.9746 19 14 3.7690 2.6045 -12.5266 20 1 3.3413 1.1826 -12.5430 21 1 3.1661 3.3166 -13.6820 22 1 5.2493 2.6772 -12.6188 23 6 5.5295 2.8121 0.1961 24 6 6.0304 2.0646 1.4348 25 8 5.4365 2.6319 2.6043 26 6 4.0104 2.5455 2.6351 27 6 3.4284 3.3122 1.4447 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.9515 0.8731 -0.9367 32 1 3.9604 0.6936 0.8342 33 1 2.3962 3.5751 -1.0203 34 1 3.8783 4.5605 -0.9905 35 1 4.5272 2.1533 -2.2639 36 1 5.0482 2.8045 -4.8266 37 1 3.6477 1.7072 -4.7717 38 1 2.2532 3.4304 -5.8823 39 1 3.6533 4.5281 -5.9374 40 1 4.8901 2.8822 -7.3189 41 1 3.4903 1.7841 -7.2642 42 1 2.0948 3.5065 -8.3746 43 1 3.4942 4.6050 -8.4296 44 1 2.0875 4.7872 -11.8278 45 1 5.9468 2.3528 -0.6999 46 1 5.8399 3.8556 0.2501 47 1 7.1150 2.1527 1.4986 48 1 5.7548 1.0127 1.3610 49 1 3.6399 2.9799 3.5636 50 1 3.7081 1.4999 2.5769 51 1 3.6963 4.3658 1.5238 52 1 2.3432 3.2106 1.4414 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588166315.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:49 Heat of formation + Delta-G solvation = -194.566443 kcal Electronic energy + Delta-G solvation = -30609.710220 eV Core-core repulsion = 26380.592265 eV Total energy + Delta-G solvation = -4229.117955 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.208 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.70464 -40.02329 -39.37037 -37.23696 -36.11303 -34.85578 -33.57094 -32.58098 -31.63443 -30.18352 -29.87405 -27.89337 -27.32326 -25.45368 -24.20711 -23.29141 -22.03746 -21.91368 -20.29862 -19.95116 -19.29304 -18.10119 -17.35038 -16.99947 -16.80891 -16.51602 -16.25507 -16.12393 -15.91340 -15.61588 -15.34110 -14.95708 -14.53418 -14.45009 -14.16086 -13.91632 -13.55028 -13.49856 -13.20700 -12.95434 -12.61413 -12.56340 -12.47593 -12.15521 -11.92114 -11.82322 -11.71436 -11.65427 -11.56901 -11.31517 -11.10738 -10.95593 -10.85324 -10.52587 -10.50672 -10.48184 -10.38968 -9.91139 -9.75435 -9.59269 -9.20063 -9.06865 -8.97210 -8.28864 -5.93622 -3.96263 1.76201 2.25494 2.78040 3.12126 3.35981 3.40332 3.41027 3.42535 3.86709 4.05827 4.08052 4.42803 4.49373 4.50096 4.54891 4.60061 4.66805 4.72665 4.81584 4.84091 4.92411 4.98977 5.09698 5.17286 5.21009 5.24985 5.33656 5.35522 5.37631 5.41527 5.47725 5.55640 5.67301 5.75678 5.78150 5.88918 6.14023 6.15978 6.32004 6.34620 6.56947 6.70821 6.86158 7.04356 7.21799 7.32963 7.44031 7.75485 7.92030 8.07852 8.31060 8.49431 9.11259 9.67131 11.17645 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016771 B = 0.001931 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.194447 B =14496.886828 C =15273.512240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.461 3.539 4 O -0.491 6.491 5 C -0.114 4.114 6 C -0.055 4.055 7 C 0.116 3.884 8 N -0.741 5.741 9 C 0.510 3.490 10 O -0.531 6.531 11 C -0.139 4.139 12 C -0.103 4.103 13 C -0.110 4.110 14 C 0.020 3.980 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.147 4.147 24 C 0.057 3.943 25 O -0.380 6.380 26 C 0.059 3.941 27 C -0.156 4.156 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.394 0.606 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.015 0.985 43 H 0.016 0.984 44 H 0.260 0.740 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.097 0.903 48 H 0.052 0.948 49 H 0.096 0.904 50 H 0.048 0.952 51 H 0.080 0.920 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.274 -10.314 32.453 34.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.304 3.696 4 O -0.379 6.379 5 C -0.152 4.152 6 C -0.056 4.056 7 C -0.007 4.007 8 N -0.395 5.395 9 C 0.298 3.702 10 O -0.407 6.407 11 C -0.179 4.179 12 C -0.141 4.141 13 C -0.147 4.147 14 C -0.017 4.017 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.184 4.184 24 C -0.020 4.020 25 O -0.299 6.299 26 C -0.017 4.017 27 C -0.194 4.194 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.228 0.772 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.097 0.903 46 H 0.103 0.897 47 H 0.116 0.884 48 H 0.071 0.929 49 H 0.114 0.886 50 H 0.066 0.934 51 H 0.099 0.901 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.487 -9.104 32.443 33.876 hybrid contribution 0.210 -0.883 -1.202 1.506 sum 3.697 -9.987 31.241 33.006 Atomic orbital electron populations 1.23305 0.75848 1.03882 1.02830 1.86491 1.23840 1.33388 1.84033 1.23604 0.91969 0.81499 0.72569 1.90614 1.67184 1.35719 1.44342 1.21638 0.88447 0.99100 1.05999 1.20683 0.95749 0.92666 0.96495 1.21670 1.02271 0.95675 0.81081 1.46169 1.51666 1.35650 1.06013 1.21077 0.80165 0.83812 0.85177 1.90719 1.35155 1.27359 1.87421 1.21794 1.02482 1.01154 0.92435 1.21445 1.00641 0.99559 0.92482 1.21647 0.99687 0.99143 0.94263 1.19092 0.96030 0.95561 0.91045 1.21243 1.28550 1.14846 0.91248 0.92824 1.25048 0.95243 0.95118 0.99204 1.69969 1.33646 1.24145 1.25689 0.86667 0.78891 0.79443 0.83016 1.20300 1.21331 1.20294 1.22306 0.93633 1.03270 0.99215 1.22659 0.98589 0.96007 0.84725 1.87968 1.19647 1.81328 1.40949 1.22639 0.81055 0.99153 0.98897 1.22446 1.02997 1.01247 0.92728 0.91540 0.87984 0.91814 0.87272 0.87338 0.88336 0.91623 0.77189 0.89178 0.89342 0.91863 0.91794 0.93490 0.93539 0.96619 0.96591 0.92994 0.90296 0.89716 0.88446 0.92941 0.88556 0.93417 0.90124 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -2.94 10.57 -39.23 -0.41 -3.36 16 3 C 0.46 3.93 7.34 36.01 0.26 4.19 16 4 O -0.49 -5.46 11.21 -18.75 -0.21 -5.67 16 5 C -0.11 -0.65 4.12 -27.88 -0.11 -0.76 16 6 C -0.06 -0.36 0.27 -154.32 -0.04 -0.41 16 7 C 0.12 1.16 4.23 -4.04 -0.02 1.14 16 8 N -0.74 -7.30 4.97 -60.29 -0.30 -7.60 16 9 C 0.51 7.25 7.83 -10.99 -0.09 7.17 16 10 O -0.53 -10.12 15.98 5.55 0.09 -10.03 16 11 C -0.14 -1.85 5.70 -27.89 -0.16 -2.01 16 12 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 13 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 16 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 17 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.76 13.29 55.43 0.74 -27.02 16 19 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.15 -0.77 4.76 -26.59 -0.13 -0.89 16 24 C 0.06 0.28 6.57 37.21 0.24 0.53 16 25 O -0.38 -2.81 10.77 -35.23 -0.38 -3.19 16 26 C 0.06 0.36 6.57 37.20 0.24 0.60 16 27 C -0.16 -1.09 4.64 -26.59 -0.12 -1.22 16 28 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 31 H 0.11 0.47 6.60 -51.93 -0.34 0.13 16 32 H 0.11 0.43 5.01 -51.93 -0.26 0.17 16 33 H 0.10 1.28 5.62 -51.93 -0.29 0.99 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.39 2.57 6.23 -40.82 -0.25 2.32 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 1.25 8.10 -51.93 -0.42 0.82 16 39 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.08 0.31 7.22 -51.93 -0.37 -0.07 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.05 0.19 6.56 -51.93 -0.34 -0.15 16 49 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.05 0.25 6.64 -51.93 -0.34 -0.10 16 51 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.10 0.81 5.55 -51.93 -0.29 0.53 16 LS Contribution 405.06 15.07 6.10 6.10 Total: -1.00 -36.70 405.06 -7.85 -44.55 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -8.80 Total: -2.48 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 0.34 Total: -8.33 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.44 Total: -34.62 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.92 Total: -22.25 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.70 -7.85 -44.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588166315.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.012 kcal (2) G-P(sol) polarization free energy of solvation -36.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds