Wall clock time and date at job start Wed Apr 1 2020 00:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34221 * 116.99935 * 2 1 4 4 O 1.20830 * 120.00349 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00007 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47175 * 185.80376 * 5 3 2 7 7 C 1.52998 * 109.61808 * 298.26528 * 6 5 3 8 8 N 1.46496 * 109.47176 * 305.58532 * 7 6 5 9 9 C 1.34782 * 120.00111 * 174.79091 * 8 7 6 10 10 O 1.21287 * 119.99644 * 359.97438 * 9 8 7 11 11 C 1.50695 * 120.00186 * 179.97438 * 9 8 7 12 12 C 1.52995 * 109.47179 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47153 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47477 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47340 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00389 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99886 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00124 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99943 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47182 * 60.00268 * 19 17 15 21 21 H 1.48505 * 109.47270 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47352 * 300.00165 * 19 17 15 23 23 C 1.53182 * 109.54392 * 178.04527 * 6 5 3 24 24 C 1.53097 * 109.16086 * 297.11476 * 23 6 5 25 25 O 1.42909 * 109.41268 * 302.39184 * 24 23 6 26 26 C 1.42900 * 114.09874 * 61.16259 * 25 24 23 27 27 C 1.53090 * 109.41255 * 298.83730 * 26 25 24 28 28 H 1.08997 * 109.47401 * 59.99853 * 1 2 3 29 29 H 1.09002 * 109.46927 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46993 * 299.99537 * 1 2 3 31 31 H 1.09002 * 109.46754 * 65.81069 * 5 3 2 32 32 H 1.08996 * 109.47524 * 305.80800 * 5 3 2 33 33 H 1.09003 * 109.47058 * 65.58387 * 7 6 5 34 34 H 1.09002 * 109.47317 * 185.58007 * 7 6 5 35 35 H 0.96996 * 120.00176 * 354.77974 * 8 7 6 36 36 H 1.09004 * 109.46971 * 299.99738 * 11 9 8 37 37 H 1.09005 * 109.46979 * 59.99082 * 11 9 8 38 38 H 1.09000 * 109.47590 * 299.99545 * 12 11 9 39 39 H 1.08997 * 109.47200 * 59.99922 * 12 11 9 40 40 H 1.08995 * 109.47518 * 300.00449 * 13 12 11 41 41 H 1.09006 * 109.47239 * 60.00511 * 13 12 11 42 42 H 1.08995 * 109.47385 * 300.00863 * 14 13 12 43 43 H 1.09006 * 109.46197 * 60.00206 * 14 13 12 44 44 H 0.97003 * 119.99675 * 179.97438 * 18 17 15 45 45 H 1.08996 * 109.52122 * 57.01655 * 23 6 5 46 46 H 1.09000 * 109.52178 * 177.20988 * 23 6 5 47 47 H 1.08999 * 109.47661 * 182.40881 * 24 23 6 48 48 H 1.08999 * 109.49086 * 62.37774 * 24 23 6 49 49 H 1.09001 * 109.47925 * 178.85727 * 26 25 24 50 50 H 1.08996 * 109.49185 * 58.82586 * 26 25 24 51 51 H 1.09004 * 109.52778 * 297.70337 * 27 26 25 52 52 H 1.09002 * 109.52434 * 177.51323 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0005 2.7347 0.1463 7 6 3.4856 3.5451 -1.0449 8 7 3.9288 2.9161 -2.2915 9 6 3.5052 3.3977 -3.4770 10 8 2.7567 4.3514 -3.5116 11 6 3.9615 2.7511 -4.7594 12 6 3.3398 3.4842 -5.9496 13 6 3.8036 2.8281 -7.2517 14 6 3.1813 3.5609 -8.4420 15 6 3.6377 2.9143 -9.7243 16 1 4.3045 2.0653 -9.6936 17 6 3.2039 3.4065 -10.9370 18 7 2.3923 4.4407 -10.9746 19 14 3.7690 2.6045 -12.5266 20 1 3.3413 1.1826 -12.5430 21 1 3.1661 3.3166 -13.6820 22 1 5.2493 2.6772 -12.6188 23 6 5.5295 2.8121 0.1961 24 6 6.0304 2.0646 1.4348 25 8 5.4365 2.6319 2.6043 26 6 4.0104 2.5455 2.6351 27 6 3.4284 3.3122 1.4447 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.9515 0.8731 -0.9367 32 1 3.9604 0.6936 0.8342 33 1 2.3962 3.5751 -1.0203 34 1 3.8783 4.5605 -0.9905 35 1 4.5272 2.1533 -2.2639 36 1 5.0482 2.8045 -4.8266 37 1 3.6477 1.7072 -4.7717 38 1 2.2532 3.4304 -5.8823 39 1 3.6533 4.5281 -5.9374 40 1 4.8901 2.8822 -7.3189 41 1 3.4903 1.7841 -7.2642 42 1 2.0948 3.5065 -8.3746 43 1 3.4942 4.6050 -8.4296 44 1 2.0875 4.7872 -11.8278 45 1 5.9468 2.3528 -0.6999 46 1 5.8399 3.8556 0.2501 47 1 7.1150 2.1527 1.4986 48 1 5.7548 1.0127 1.3610 49 1 3.6399 2.9799 3.5636 50 1 3.7081 1.4999 2.5769 51 1 3.6963 4.3658 1.5238 52 1 2.3432 3.2106 1.4414 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588166315.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:47 Heat of formation + Delta-G solvation = -219.584757 kcal Electronic energy + Delta-G solvation = -30610.795096 eV Core-core repulsion = 26380.592265 eV Total energy + Delta-G solvation = -4230.202830 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.208 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.33125 -40.80832 -40.25062 -37.88000 -36.93532 -36.53173 -34.63204 -34.41516 -32.08130 -31.56507 -30.69368 -28.81458 -27.99724 -27.05080 -24.71701 -24.41668 -23.31626 -22.51584 -21.78950 -21.31770 -19.84022 -18.72217 -18.42113 -18.21592 -17.65830 -17.51549 -17.02301 -16.97868 -16.83624 -16.60469 -16.43849 -15.94939 -15.73117 -15.34849 -14.99717 -14.91218 -14.53315 -14.38762 -14.15672 -13.92623 -13.76627 -13.59408 -13.43228 -13.25955 -13.08127 -13.00485 -12.77826 -12.56141 -12.37740 -12.29357 -12.26317 -12.16330 -12.12634 -11.84407 -11.73973 -11.39666 -11.37694 -11.34859 -11.17516 -11.04517 -10.78458 -10.54525 -10.36809 -10.04869 -8.18411 -6.30954 1.13923 1.40311 1.44654 1.52458 1.66025 1.72018 2.18197 2.42272 3.00211 3.14050 3.32830 3.48594 3.56873 3.83741 3.92519 4.01596 4.03882 4.07608 4.14282 4.16203 4.26460 4.27251 4.29610 4.45738 4.53058 4.61080 4.64746 4.67582 4.69776 4.69962 4.76583 4.83455 4.84072 4.86089 4.88119 5.00608 5.12107 5.16872 5.18565 5.26069 5.33507 5.35276 5.44546 5.50993 5.57103 5.77717 5.87834 6.24929 6.29743 6.53962 6.71574 6.87496 7.28848 7.38679 8.93673 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016771 B = 0.001931 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.194447 B =14496.886828 C =15273.512240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.363 6.363 3 C 0.455 3.545 4 O -0.525 6.525 5 C -0.112 4.112 6 C -0.046 4.046 7 C 0.120 3.880 8 N -0.715 5.715 9 C 0.508 3.492 10 O -0.591 6.591 11 C -0.127 4.127 12 C -0.097 4.097 13 C -0.094 4.094 14 C 0.018 3.982 15 C -0.541 4.541 16 H 0.068 0.932 17 C -0.009 4.009 18 N -0.939 5.939 19 Si 0.971 3.029 20 H -0.264 1.264 21 H -0.286 1.286 22 H -0.263 1.263 23 C -0.142 4.142 24 C 0.053 3.947 25 O -0.400 6.400 26 C 0.063 3.937 27 C -0.154 4.154 28 H 0.050 0.950 29 H 0.129 0.871 30 H 0.064 0.936 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.415 0.585 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.038 0.962 39 H 0.041 0.959 40 H 0.063 0.937 41 H 0.062 0.938 42 H -0.018 1.018 43 H -0.017 1.017 44 H 0.263 0.737 45 H 0.101 0.899 46 H 0.071 0.929 47 H 0.109 0.891 48 H 0.074 0.926 49 H 0.099 0.901 50 H 0.062 0.938 51 H 0.067 0.933 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.965 -13.820 32.969 36.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.280 6.280 3 C 0.300 3.700 4 O -0.414 6.414 5 C -0.148 4.148 6 C -0.046 4.046 7 C -0.004 4.004 8 N -0.369 5.369 9 C 0.296 3.704 10 O -0.471 6.471 11 C -0.166 4.166 12 C -0.135 4.135 13 C -0.132 4.132 14 C -0.019 4.019 15 C -0.579 4.579 16 H 0.086 0.914 17 C -0.206 4.206 18 N -0.579 5.579 19 Si 0.795 3.205 20 H -0.188 1.188 21 H -0.212 1.212 22 H -0.188 1.188 23 C -0.179 4.179 24 C -0.023 4.023 25 O -0.319 6.319 26 C -0.014 4.014 27 C -0.192 4.192 28 H 0.069 0.931 29 H 0.148 0.852 30 H 0.083 0.917 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.254 0.746 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.001 0.999 43 H 0.002 0.998 44 H 0.071 0.929 45 H 0.119 0.881 46 H 0.089 0.911 47 H 0.127 0.873 48 H 0.092 0.908 49 H 0.117 0.883 50 H 0.080 0.920 51 H 0.086 0.914 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.225 -12.674 33.001 35.895 hybrid contribution -0.696 0.258 -1.318 1.513 sum 5.530 -12.415 31.682 34.475 Atomic orbital electron populations 1.23468 0.75271 1.05485 1.02144 1.86491 1.24524 1.33160 1.83780 1.24230 0.93116 0.81097 0.71585 1.90630 1.68144 1.36786 1.45866 1.21769 0.86403 0.98436 1.08233 1.20582 0.96859 0.92841 0.94331 1.21573 1.00525 0.95912 0.82365 1.45892 1.50727 1.35514 1.04783 1.21275 0.79468 0.83093 0.86554 1.90710 1.38009 1.30127 1.88244 1.21681 1.03981 1.01605 0.89373 1.21246 0.99461 0.98933 0.93885 1.21439 1.00085 0.99066 0.92572 1.19063 0.94352 0.94623 0.93898 1.21724 1.28738 1.15303 0.92154 0.91403 1.26130 0.95157 0.95634 1.03671 1.70137 1.35057 1.25903 1.26825 0.85414 0.78922 0.78675 0.77503 1.18826 1.21185 1.18806 1.22293 0.91988 1.02978 1.00674 1.22857 0.99164 0.96863 0.83458 1.87951 1.19994 1.81846 1.42151 1.22640 0.80700 0.99716 0.98312 1.22382 1.02113 1.00917 0.93832 0.93101 0.85242 0.91712 0.85085 0.84656 0.91413 0.93149 0.74635 0.85835 0.86261 0.94320 0.94034 0.91808 0.91970 0.99941 0.99843 0.92882 0.88089 0.91059 0.87308 0.90753 0.88273 0.91951 0.91410 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.36 -5.36 10.57 -51.33 -0.54 -5.90 16 3 C 0.45 7.27 7.34 71.24 0.52 7.79 16 4 O -0.52 -12.03 11.21 21.95 0.25 -11.78 16 5 C -0.11 -0.94 4.12 29.85 0.12 -0.82 16 6 C -0.05 -0.53 0.27 -52.06 -0.01 -0.55 16 7 C 0.12 2.40 4.23 86.38 0.37 2.76 16 8 N -0.71 -12.85 4.97 -463.06 -2.30 -15.15 16 9 C 0.51 14.07 7.83 87.65 0.69 14.75 16 10 O -0.59 -23.47 15.98 -3.05 -0.05 -23.52 16 11 C -0.13 -3.08 5.70 29.84 0.17 -2.91 16 12 C -0.10 -3.58 4.50 30.59 0.14 -3.44 16 13 C -0.09 -3.85 5.15 30.59 0.16 -3.70 16 14 C 0.02 0.99 4.97 29.85 0.15 1.14 16 15 C -0.54 -31.53 9.11 25.60 0.23 -31.30 16 16 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 17 C -0.01 -0.53 5.46 84.65 0.46 -0.06 16 18 N -0.94 -59.69 13.29 21.45 0.28 -59.41 16 19 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 22 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 23 C -0.14 -1.10 4.76 30.69 0.15 -0.96 16 24 C 0.05 0.35 6.57 72.01 0.47 0.82 16 25 O -0.40 -5.07 10.77 -148.98 -1.60 -6.68 16 26 C 0.06 0.67 6.57 72.01 0.47 1.14 16 27 C -0.15 -2.14 4.64 30.68 0.14 -2.00 16 28 H 0.05 0.78 8.13 -2.39 -0.02 0.76 16 29 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 31 H 0.13 0.56 6.60 -2.39 -0.02 0.54 16 32 H 0.14 0.49 5.01 -2.39 -0.01 0.48 16 33 H 0.07 1.87 5.62 -2.39 -0.01 1.85 16 34 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.42 3.81 6.23 -92.71 -0.58 3.23 16 36 H 0.12 2.25 8.14 -2.38 -0.02 2.23 16 37 H 0.12 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 39 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 40 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 42 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 43 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 44 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 45 H 0.10 0.35 7.22 -2.39 -0.02 0.33 16 46 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.07 0.19 6.56 -2.39 -0.02 0.17 16 49 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.06 0.48 6.64 -2.39 -0.02 0.46 16 51 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 52 H 0.08 1.44 5.55 -2.39 -0.01 1.42 16 Total: -1.00 -85.13 405.06 3.82 -81.31 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.34 Total: 9.96 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 5.42 Total: -15.76 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -2.02 Total: -74.56 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -1.95 Total: -47.89 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -85.13 3.82 -81.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588166315.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.272 kcal (2) G-P(sol) polarization free energy of solvation -85.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds