Wall clock time and date at job start Wed Apr 1 2020 01:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 111.00149 * 2 1 4 4 C 1.50700 * 109.47155 * 293.95721 * 3 2 1 5 5 O 1.21294 * 119.99720 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99980 * 179.97438 * 4 3 2 7 7 C 1.37104 * 120.00016 * 179.97438 * 6 4 3 8 8 H 1.08004 * 119.99481 * 0.02562 * 7 6 4 9 9 C 1.38946 * 119.99868 * 179.97438 * 7 6 4 10 10 N 1.31416 * 119.99769 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00288 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.46981 * 89.99878 * 11 9 7 13 13 H 1.48496 * 109.47084 * 209.99663 * 11 9 7 14 14 H 1.48496 * 109.47002 * 329.99865 * 11 9 7 15 15 C 1.46905 * 111.00214 * 123.95428 * 2 1 3 16 16 C 1.52997 * 109.47030 * 164.01391 * 15 2 1 17 17 H 1.09000 * 109.47116 * 58.52423 * 16 15 2 18 18 O 1.42901 * 109.47273 * 298.51681 * 16 15 2 19 19 C 1.53005 * 109.46899 * 178.52027 * 16 15 2 20 20 N 1.46498 * 109.46987 * 184.99990 * 19 16 15 21 21 C 1.46502 * 119.99928 * 89.99951 * 20 19 16 22 22 C 1.34775 * 119.99871 * 269.99760 * 20 19 16 23 23 O 1.21279 * 120.00037 * 0.02562 * 22 20 19 24 24 C 1.50704 * 119.99761 * 180.02562 * 22 20 19 25 25 H 1.09000 * 115.54948 * 325.72346 * 24 22 20 26 26 C 1.53000 * 117.49810 * 111.39214 * 24 22 20 27 27 C 1.52998 * 60.00063 * 107.48593 * 26 24 22 28 28 C 1.52994 * 117.50301 * 252.50783 * 27 26 24 29 29 C 1.53006 * 117.49366 * 107.48663 * 27 26 24 30 30 H 1.09003 * 109.47127 * 302.03027 * 1 2 3 31 31 H 1.09003 * 109.46838 * 62.03383 * 1 2 3 32 32 H 1.08999 * 109.46698 * 182.03166 * 1 2 3 33 33 H 1.09006 * 109.46860 * 53.95535 * 3 2 1 34 34 H 1.08997 * 109.46983 * 173.95274 * 3 2 1 35 35 H 0.96998 * 120.00135 * 359.97438 * 6 4 3 36 36 H 0.96999 * 120.00179 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.46650 * 44.00993 * 15 2 1 38 38 H 1.09001 * 109.46828 * 284.01488 * 15 2 1 39 39 H 0.96695 * 113.99741 * 300.00278 * 18 16 15 40 40 H 1.08997 * 109.47211 * 64.99615 * 19 16 15 41 41 H 1.09001 * 109.47043 * 305.00254 * 19 16 15 42 42 H 1.09005 * 109.46740 * 90.00097 * 21 20 19 43 43 H 1.08997 * 109.47128 * 209.99554 * 21 20 19 44 44 H 1.08996 * 109.47127 * 329.99780 * 21 20 19 45 45 H 1.09001 * 117.50458 * 214.98050 * 26 24 22 46 46 H 1.09006 * 117.49609 * 359.97438 * 26 24 22 47 47 H 1.09010 * 109.47117 * 128.62253 * 28 27 26 48 48 H 1.08997 * 109.47409 * 248.62167 * 28 27 26 49 49 H 1.09000 * 109.47012 * 8.62377 * 28 27 26 50 50 H 1.08992 * 109.47129 * 351.38229 * 29 27 26 51 51 H 1.08996 * 109.46748 * 111.38279 * 29 27 26 52 52 H 1.09001 * 109.47118 * 231.37944 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 8 1.0054 1.4453 -2.1411 6 7 2.0180 3.3202 -1.5232 7 6 1.6923 3.9348 -2.7047 8 1 1.1299 3.3989 -3.4550 9 6 2.0847 5.2475 -2.9363 10 7 1.7720 5.8367 -4.0685 11 14 3.0567 6.1746 -1.6382 12 1 4.5094 5.9627 -1.8624 13 1 2.7480 7.6242 -1.7300 14 1 2.6856 5.6738 -0.2904 15 6 1.9955 -0.7660 1.1376 16 6 3.4729 -1.0838 0.8984 17 1 4.0282 -0.1548 0.7700 18 8 3.6035 -1.8836 -0.2787 19 6 4.0308 -1.8497 2.0998 20 7 5.4715 -2.0497 1.9251 21 6 6.4164 -1.0521 2.4331 22 6 5.9275 -3.1515 1.2970 23 8 5.1452 -3.9772 0.8761 24 6 7.4096 -3.3576 1.1179 25 1 7.9944 -2.4515 0.9589 26 6 8.0656 -4.4923 1.9071 27 6 7.8641 -4.6280 0.3965 28 6 6.7792 -5.5920 -0.0877 29 6 9.1049 -4.5297 -0.4933 30 1 -0.3633 0.5451 0.8712 31 1 -0.3633 0.4819 -0.9077 32 1 -0.3633 -1.0270 0.0364 33 1 1.5611 1.9274 0.8310 34 1 3.0797 1.3444 0.1083 35 1 2.5228 3.8016 -0.8492 36 1 2.0463 6.7529 -4.2304 37 1 1.4357 -1.6956 1.2398 38 1 1.8934 -0.1782 2.0498 39 1 3.1335 -2.7275 -0.2349 40 1 3.5359 -2.8179 2.1751 41 1 3.8510 -1.2781 3.0103 42 1 6.6909 -1.3007 3.4583 43 1 7.3099 -1.0470 1.8089 44 1 5.9515 -0.0665 2.4102 45 1 9.0821 -4.3331 2.2671 46 1 7.4252 -5.0896 2.5563 47 1 6.1254 -5.0786 -0.7929 48 1 7.2450 -6.4458 -0.5796 49 1 6.1941 -5.9382 0.7643 50 1 9.9592 -4.2185 0.1077 51 1 9.3098 -5.5027 -0.9397 52 1 8.9294 -3.7978 -1.2818 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278855152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:21 Heat of formation + Delta-G solvation = -74.086181 kcal Electronic energy + Delta-G solvation = -30830.839634 eV Core-core repulsion = 26639.238847 eV Total energy + Delta-G solvation = -4191.600787 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.64473 -39.02385 -38.16241 -37.10312 -35.77568 -35.15732 -33.83476 -31.63821 -30.90791 -29.61975 -28.22980 -27.69337 -27.51354 -26.43142 -24.70649 -23.94081 -22.28904 -21.17781 -20.07348 -19.31384 -18.77578 -18.25230 -17.59228 -16.79099 -16.24160 -15.96858 -15.58981 -15.41005 -15.10331 -14.86274 -14.66555 -14.31739 -14.17561 -13.89785 -13.76860 -13.66834 -13.36329 -13.11261 -13.08821 -12.97094 -12.80381 -12.57727 -12.42538 -12.15924 -12.08184 -11.98153 -11.88228 -11.73222 -11.47837 -11.45097 -11.37681 -11.09376 -10.83700 -10.58337 -10.49839 -10.18951 -10.04160 -9.94675 -9.59228 -9.50609 -8.76598 -8.49307 -8.14390 -7.87679 -6.27752 -3.78774 2.33522 2.70232 3.02837 3.07674 3.15530 3.46029 3.77914 3.91058 4.12374 4.16008 4.34318 4.44515 4.53223 4.59529 4.68789 4.83175 4.84380 4.88198 4.92947 5.07597 5.13293 5.18201 5.25467 5.25657 5.33676 5.36938 5.39778 5.43431 5.48229 5.55501 5.61170 5.67098 5.69158 5.77468 5.82977 5.83367 5.88708 5.96928 5.99153 6.01591 6.20972 6.35475 6.52731 7.14392 7.18557 7.32912 7.62242 7.92220 8.06460 8.18722 8.64334 8.99313 9.46184 9.88358 10.85623 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012991 B = 0.002437 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.766920 B =11484.805074 C =12293.360084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.507 5.507 3 C 0.043 3.957 4 C 0.456 3.544 5 O -0.556 6.556 6 N -0.594 5.594 7 C -0.302 4.302 8 H 0.120 0.880 9 C 0.040 3.960 10 N -0.883 5.883 11 Si 0.879 3.121 12 H -0.271 1.271 13 H -0.277 1.277 14 H -0.271 1.271 15 C 0.024 3.976 16 C 0.097 3.903 17 H 0.094 0.906 18 O -0.532 6.532 19 C 0.084 3.916 20 N -0.610 5.610 21 C 0.078 3.922 22 C 0.551 3.449 23 O -0.527 6.527 24 C -0.188 4.188 25 H 0.122 0.878 26 C -0.149 4.149 27 C -0.092 4.092 28 C -0.103 4.103 29 C -0.118 4.118 30 H 0.013 0.987 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.369 0.631 36 H 0.273 0.727 37 H 0.078 0.922 38 H 0.038 0.962 39 H 0.372 0.628 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.071 0.929 48 H 0.047 0.953 49 H 0.062 0.938 50 H 0.057 0.943 51 H 0.065 0.935 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.446 -17.698 19.548 29.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.230 5.230 3 C -0.089 4.089 4 C 0.241 3.759 5 O -0.437 6.437 6 N -0.234 5.234 7 C -0.431 4.431 8 H 0.137 0.863 9 C -0.162 4.162 10 N -0.523 5.523 11 Si 0.706 3.294 12 H -0.196 1.196 13 H -0.202 1.202 14 H -0.196 1.196 15 C -0.105 4.105 16 C 0.035 3.965 17 H 0.112 0.888 18 O -0.336 6.336 19 C -0.040 4.040 20 N -0.343 5.343 21 C -0.065 4.065 22 C 0.340 3.660 23 O -0.403 6.403 24 C -0.209 4.209 25 H 0.140 0.860 26 C -0.186 4.186 27 C -0.092 4.092 28 C -0.160 4.160 29 C -0.175 4.175 30 H 0.032 0.968 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.201 0.799 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.219 0.781 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.120 0.880 46 H 0.115 0.885 47 H 0.090 0.910 48 H 0.066 0.934 49 H 0.081 0.919 50 H 0.076 0.924 51 H 0.084 0.916 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.104 -18.076 17.974 28.663 hybrid contribution 0.255 1.334 2.123 2.520 sum 13.359 -16.742 20.097 29.371 Atomic orbital electron populations 1.22567 0.86403 1.01286 1.02233 1.61443 1.08409 1.12299 1.40860 1.21946 1.00699 0.89336 0.96893 1.19611 0.84969 0.82350 0.88938 1.90527 1.42445 1.64007 1.46701 1.42207 1.51318 1.11967 1.17858 1.19430 1.33695 0.96231 0.93714 0.86282 1.25029 0.97971 0.96497 0.96752 1.69624 1.45870 1.13577 1.23258 0.86675 0.80934 0.80447 0.81333 1.19635 1.20238 1.19618 1.22814 0.96430 0.98950 0.92332 1.22276 0.94127 0.94565 0.85488 0.88781 1.86649 1.75812 1.33804 1.37359 1.22220 0.80922 1.02149 0.98689 1.47626 1.06456 1.21950 1.58283 1.21828 0.93510 0.92055 0.99126 1.19542 0.89202 0.80621 0.76646 1.90658 1.57919 1.43553 1.48156 1.22400 0.93805 0.95536 1.09200 0.86041 1.23196 1.01353 0.99387 0.94664 1.21587 0.98202 0.96257 0.93191 1.21355 0.96037 0.96602 1.01993 1.21408 0.94570 1.02557 0.98947 0.96813 0.88393 0.92175 0.93602 0.89564 0.79854 0.91682 0.90354 0.94380 0.78060 0.89443 0.89948 0.92561 0.90802 0.90991 0.88021 0.88465 0.91009 0.93383 0.91863 0.92398 0.91603 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.19 60.07 0.55 0.92 16 2 N -0.51 -8.32 4.35 -244.36 -1.06 -9.39 16 3 C 0.04 0.74 5.30 -4.97 -0.03 0.71 16 4 C 0.46 10.67 7.52 -10.99 -0.08 10.58 16 5 O -0.56 -15.26 13.88 5.55 0.08 -15.18 16 6 N -0.59 -14.45 5.09 -10.96 -0.06 -14.50 16 7 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 8 H 0.12 3.91 7.39 -52.48 -0.39 3.53 16 9 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 10 N -0.88 -26.12 13.96 55.50 0.77 -25.34 16 11 Si 0.88 19.53 27.74 -169.99 -4.71 14.81 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 13 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 15 C 0.02 0.29 4.63 -3.82 -0.02 0.27 16 16 C 0.10 1.14 3.23 -26.73 -0.09 1.05 16 17 H 0.09 1.19 6.55 -51.93 -0.34 0.85 16 18 O -0.53 -8.04 12.10 -43.01 -0.52 -8.56 16 19 C 0.08 0.76 5.11 -4.04 -0.02 0.74 16 20 N -0.61 -5.72 2.86 -181.57 -0.52 -6.24 16 21 C 0.08 0.50 10.27 59.85 0.61 1.11 16 22 C 0.55 6.13 7.06 -10.98 -0.08 6.05 16 23 O -0.53 -7.14 11.66 -2.22 -0.03 -7.17 16 24 C -0.19 -1.66 5.01 -91.77 -0.46 -2.12 16 25 H 0.12 0.91 6.44 -51.93 -0.33 0.57 16 26 C -0.15 -1.07 9.52 -26.73 -0.25 -1.32 16 27 C -0.09 -0.80 2.70 -154.51 -0.42 -1.21 16 28 C -0.10 -1.04 8.09 37.15 0.30 -0.74 16 29 C -0.12 -0.83 9.85 37.16 0.37 -0.47 16 30 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 31 H 0.10 1.95 5.92 -51.93 -0.31 1.64 16 32 H 0.06 0.83 7.95 -51.93 -0.41 0.42 16 33 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 34 H 0.09 1.35 6.38 -51.93 -0.33 1.01 16 35 H 0.37 7.86 5.76 -40.82 -0.24 7.62 16 36 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.08 0.83 7.87 -51.93 -0.41 0.42 16 38 H 0.04 0.38 8.05 -51.93 -0.42 -0.03 16 39 H 0.37 5.00 8.75 45.56 0.40 5.40 16 40 H 0.09 0.84 7.42 -51.93 -0.39 0.46 16 41 H 0.08 0.55 8.07 -51.93 -0.42 0.14 16 42 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.07 0.43 5.99 -51.93 -0.31 0.11 16 44 H 0.07 0.41 8.07 -51.93 -0.42 0.00 16 45 H 0.10 0.54 8.05 -51.93 -0.42 0.12 16 46 H 0.10 0.74 8.05 -51.93 -0.42 0.33 16 47 H 0.07 0.88 7.26 -51.92 -0.38 0.51 16 48 H 0.05 0.41 7.92 -51.93 -0.41 0.00 16 49 H 0.06 0.69 7.01 -51.93 -0.36 0.33 16 50 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 51 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 52 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 411.07 15.07 6.19 6.19 Total: -1.00 -35.83 411.07 -7.69 -43.52 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -7.98 Total: 14.09 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 0.14 Total: 7.76 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.86 Total: -55.47 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.47 Total: -30.91 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.71 Total: 14.81 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.83 -7.69 -43.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278855152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.564 kcal (2) G-P(sol) polarization free energy of solvation -35.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds