Wall clock time and date at job start Wed Apr 1 2020 01:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 111.00149 * 2 1 4 4 C 1.50700 * 109.47155 * 293.95721 * 3 2 1 5 5 O 1.21294 * 119.99720 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99980 * 179.97438 * 4 3 2 7 7 C 1.37104 * 120.00016 * 179.97438 * 6 4 3 8 8 H 1.08004 * 119.99481 * 0.02562 * 7 6 4 9 9 C 1.38946 * 119.99868 * 179.97438 * 7 6 4 10 10 N 1.31416 * 119.99769 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00288 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.46981 * 89.99878 * 11 9 7 13 13 H 1.48496 * 109.47084 * 209.99663 * 11 9 7 14 14 H 1.48496 * 109.47002 * 329.99865 * 11 9 7 15 15 C 1.46905 * 111.00214 * 123.95428 * 2 1 3 16 16 C 1.52997 * 109.47030 * 164.01391 * 15 2 1 17 17 H 1.09000 * 109.47116 * 58.52423 * 16 15 2 18 18 O 1.42901 * 109.47273 * 298.51681 * 16 15 2 19 19 C 1.53005 * 109.46899 * 178.52027 * 16 15 2 20 20 N 1.46498 * 109.46987 * 184.99990 * 19 16 15 21 21 C 1.46502 * 119.99928 * 89.99951 * 20 19 16 22 22 C 1.34775 * 119.99871 * 269.99760 * 20 19 16 23 23 O 1.21279 * 120.00037 * 0.02562 * 22 20 19 24 24 C 1.50704 * 119.99761 * 180.02562 * 22 20 19 25 25 H 1.09000 * 115.54948 * 325.72346 * 24 22 20 26 26 C 1.53000 * 117.49810 * 111.39214 * 24 22 20 27 27 C 1.52998 * 60.00063 * 107.48593 * 26 24 22 28 28 C 1.52994 * 117.50301 * 252.50783 * 27 26 24 29 29 C 1.53006 * 117.49366 * 107.48663 * 27 26 24 30 30 H 1.09003 * 109.47127 * 302.03027 * 1 2 3 31 31 H 1.09003 * 109.46838 * 62.03383 * 1 2 3 32 32 H 1.08999 * 109.46698 * 182.03166 * 1 2 3 33 33 H 1.09006 * 109.46860 * 53.95535 * 3 2 1 34 34 H 1.08997 * 109.46983 * 173.95274 * 3 2 1 35 35 H 0.96998 * 120.00135 * 359.97438 * 6 4 3 36 36 H 0.96999 * 120.00179 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.46650 * 44.00993 * 15 2 1 38 38 H 1.09001 * 109.46828 * 284.01488 * 15 2 1 39 39 H 0.96695 * 113.99741 * 300.00278 * 18 16 15 40 40 H 1.08997 * 109.47211 * 64.99615 * 19 16 15 41 41 H 1.09001 * 109.47043 * 305.00254 * 19 16 15 42 42 H 1.09005 * 109.46740 * 90.00097 * 21 20 19 43 43 H 1.08997 * 109.47128 * 209.99554 * 21 20 19 44 44 H 1.08996 * 109.47127 * 329.99780 * 21 20 19 45 45 H 1.09001 * 117.50458 * 214.98050 * 26 24 22 46 46 H 1.09006 * 117.49609 * 359.97438 * 26 24 22 47 47 H 1.09010 * 109.47117 * 128.62253 * 28 27 26 48 48 H 1.08997 * 109.47409 * 248.62167 * 28 27 26 49 49 H 1.09000 * 109.47012 * 8.62377 * 28 27 26 50 50 H 1.08992 * 109.47129 * 351.38229 * 29 27 26 51 51 H 1.08996 * 109.46748 * 111.38279 * 29 27 26 52 52 H 1.09001 * 109.47118 * 231.37944 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 8 1.0054 1.4453 -2.1411 6 7 2.0180 3.3202 -1.5232 7 6 1.6923 3.9348 -2.7047 8 1 1.1299 3.3989 -3.4550 9 6 2.0847 5.2475 -2.9363 10 7 1.7720 5.8367 -4.0685 11 14 3.0567 6.1746 -1.6382 12 1 4.5094 5.9627 -1.8624 13 1 2.7480 7.6242 -1.7300 14 1 2.6856 5.6738 -0.2904 15 6 1.9955 -0.7660 1.1376 16 6 3.4729 -1.0838 0.8984 17 1 4.0282 -0.1548 0.7700 18 8 3.6035 -1.8836 -0.2787 19 6 4.0308 -1.8497 2.0998 20 7 5.4715 -2.0497 1.9251 21 6 6.4164 -1.0521 2.4331 22 6 5.9275 -3.1515 1.2970 23 8 5.1452 -3.9772 0.8761 24 6 7.4096 -3.3576 1.1179 25 1 7.9944 -2.4515 0.9589 26 6 8.0656 -4.4923 1.9071 27 6 7.8641 -4.6280 0.3965 28 6 6.7792 -5.5920 -0.0877 29 6 9.1049 -4.5297 -0.4933 30 1 -0.3633 0.5451 0.8712 31 1 -0.3633 0.4819 -0.9077 32 1 -0.3633 -1.0270 0.0364 33 1 1.5611 1.9274 0.8310 34 1 3.0797 1.3444 0.1083 35 1 2.5228 3.8016 -0.8492 36 1 2.0463 6.7529 -4.2304 37 1 1.4357 -1.6956 1.2398 38 1 1.8934 -0.1782 2.0498 39 1 3.1335 -2.7275 -0.2349 40 1 3.5359 -2.8179 2.1751 41 1 3.8510 -1.2781 3.0103 42 1 6.6909 -1.3007 3.4583 43 1 7.3099 -1.0470 1.8089 44 1 5.9515 -0.0665 2.4102 45 1 9.0821 -4.3331 2.2671 46 1 7.4252 -5.0896 2.5563 47 1 6.1254 -5.0786 -0.7929 48 1 7.2450 -6.4458 -0.5796 49 1 6.1941 -5.9382 0.7643 50 1 9.9592 -4.2185 0.1077 51 1 9.3098 -5.5027 -0.9397 52 1 8.9294 -3.7978 -1.2818 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278855152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:19 Heat of formation + Delta-G solvation = -102.940545 kcal Electronic energy + Delta-G solvation = -30832.090853 eV Core-core repulsion = 26639.238847 eV Total energy + Delta-G solvation = -4192.852007 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.38168 -40.56363 -39.25938 -38.06479 -36.88095 -36.11647 -35.81654 -33.75655 -31.79864 -30.32972 -29.72729 -28.40170 -28.23868 -27.17457 -26.51456 -24.90505 -23.25072 -22.29047 -21.23467 -20.73343 -20.17593 -19.46889 -18.37351 -17.92442 -17.49945 -16.97347 -16.84814 -16.69315 -16.34283 -16.04745 -15.56088 -15.52560 -15.26550 -15.04273 -14.84504 -14.81068 -14.57070 -14.34182 -14.01187 -13.97875 -13.72544 -13.66168 -13.55963 -13.22066 -13.10959 -12.86814 -12.77685 -12.70793 -12.63472 -12.58361 -12.47564 -12.41371 -12.10556 -11.97708 -11.85188 -11.47882 -11.17547 -11.10913 -10.73863 -10.38887 -10.32627 -10.23520 -9.48379 -9.10897 -8.40987 -6.01975 1.28682 1.35556 1.44202 1.58919 1.96146 2.05119 2.23246 2.63117 2.82359 3.13950 3.19709 3.53205 3.68337 3.72679 3.78927 3.86745 4.01210 4.08034 4.15863 4.21236 4.24942 4.29956 4.37908 4.40955 4.45957 4.55526 4.61566 4.65407 4.67932 4.74048 4.79912 4.81962 4.84606 4.94976 5.01480 5.07716 5.09461 5.12752 5.13649 5.18718 5.32673 5.51901 5.53296 5.59680 5.89945 6.02190 6.21490 6.45041 6.60409 6.88998 6.93021 7.30993 7.39942 7.98594 8.77000 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012991 B = 0.002437 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.766920 B =11484.805074 C =12293.360084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.537 5.537 3 C 0.056 3.944 4 C 0.450 3.550 5 O -0.606 6.606 6 N -0.593 5.593 7 C -0.327 4.327 8 H 0.052 0.948 9 C -0.018 4.018 10 N -0.936 5.936 11 Si 0.967 3.033 12 H -0.257 1.257 13 H -0.274 1.274 14 H -0.230 1.230 15 C 0.030 3.970 16 C 0.097 3.903 17 H 0.089 0.911 18 O -0.563 6.563 19 C 0.091 3.909 20 N -0.612 5.612 21 C 0.071 3.929 22 C 0.537 3.463 23 O -0.563 6.563 24 C -0.196 4.196 25 H 0.137 0.863 26 C -0.126 4.126 27 C -0.110 4.110 28 C -0.096 4.096 29 C -0.114 4.114 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.389 0.611 36 H 0.279 0.721 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.374 0.626 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.129 0.871 46 H 0.090 0.910 47 H 0.041 0.959 48 H 0.058 0.942 49 H 0.049 0.951 50 H 0.077 0.923 51 H 0.069 0.931 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.204 -16.990 24.314 33.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.262 5.262 3 C -0.075 4.075 4 C 0.238 3.762 5 O -0.490 6.490 6 N -0.235 5.235 7 C -0.457 4.457 8 H 0.070 0.930 9 C -0.216 4.216 10 N -0.577 5.577 11 Si 0.786 3.214 12 H -0.181 1.181 13 H -0.199 1.199 14 H -0.153 1.153 15 C -0.098 4.098 16 C 0.036 3.964 17 H 0.106 0.894 18 O -0.368 6.368 19 C -0.033 4.033 20 N -0.343 5.343 21 C -0.071 4.071 22 C 0.327 3.673 23 O -0.442 6.442 24 C -0.216 4.216 25 H 0.155 0.845 26 C -0.163 4.163 27 C -0.110 4.110 28 C -0.153 4.153 29 C -0.171 4.171 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.129 0.871 35 H 0.224 0.776 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.222 0.778 40 H 0.096 0.904 41 H 0.134 0.866 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.147 0.853 46 H 0.109 0.891 47 H 0.060 0.940 48 H 0.077 0.923 49 H 0.068 0.932 50 H 0.095 0.905 51 H 0.088 0.912 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.874 -17.371 22.787 32.757 hybrid contribution -0.698 1.013 0.536 1.342 sum 15.176 -16.358 23.323 32.277 Atomic orbital electron populations 1.22405 0.86677 1.02161 1.00699 1.61327 1.08525 1.12170 1.44136 1.21845 1.02342 0.89797 0.93499 1.20939 0.82895 0.81751 0.90596 1.90519 1.44188 1.65123 1.49148 1.42025 1.52008 1.12570 1.16906 1.18985 1.34866 0.97072 0.94738 0.92979 1.26155 0.98697 0.96932 0.99804 1.69815 1.47292 1.14378 1.26228 0.85342 0.78964 0.78080 0.78982 1.18111 1.19931 1.15271 1.22849 0.96109 0.99128 0.91713 1.22401 0.94302 0.94189 0.85513 0.89367 1.86609 1.76235 1.34316 1.39643 1.22151 0.80786 1.01768 0.98591 1.47772 1.07062 1.21950 1.57566 1.22061 0.93164 0.91688 1.00171 1.20050 0.90075 0.80795 0.76397 1.90645 1.58919 1.44940 1.49689 1.22467 0.92727 0.96370 1.10085 0.84515 1.23245 1.02310 0.97600 0.93194 1.21672 0.98379 0.96159 0.94816 1.21223 0.96123 0.97158 1.00801 1.21394 0.94387 1.02610 0.98685 0.94599 0.93222 0.90454 0.90101 0.87146 0.77554 0.91163 0.89243 0.91088 0.77817 0.90355 0.86583 0.90605 0.90332 0.89941 0.85313 0.89125 0.94044 0.92295 0.93190 0.90455 0.91202 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 9.19 127.69 1.17 2.06 16 2 N -0.54 -16.71 4.35 -927.01 -4.03 -20.74 16 3 C 0.06 1.80 5.30 85.56 0.45 2.25 16 4 C 0.45 21.23 7.52 87.66 0.66 21.89 16 5 O -0.61 -35.09 13.88 -3.07 -0.04 -35.13 16 6 N -0.59 -28.77 5.09 -306.98 -1.56 -30.33 16 7 C -0.33 -19.67 10.16 84.04 0.85 -18.82 16 8 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 9 C -0.02 -1.00 5.50 84.92 0.47 -0.53 16 10 N -0.94 -57.43 13.96 21.66 0.30 -57.13 16 11 Si 0.97 39.01 27.74 68.60 1.90 40.91 16 12 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 13 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 14 H -0.23 -7.68 6.52 99.48 0.65 -7.04 16 15 C 0.03 0.61 4.63 86.30 0.40 1.01 16 16 C 0.10 2.04 3.23 30.59 0.10 2.14 16 17 H 0.09 1.96 6.55 -2.39 -0.02 1.94 16 18 O -0.56 -16.95 12.10 -141.54 -1.71 -18.66 16 19 C 0.09 1.39 5.11 86.38 0.44 1.83 16 20 N -0.61 -10.04 2.86 -846.75 -2.42 -12.46 16 21 C 0.07 0.65 10.27 127.77 1.31 1.97 16 22 C 0.54 11.47 7.06 87.66 0.62 12.09 16 23 O -0.56 -15.62 11.66 4.41 0.05 -15.57 16 24 C -0.20 -3.12 5.01 -11.54 -0.06 -3.18 16 25 H 0.14 1.71 6.44 -2.39 -0.02 1.69 16 26 C -0.13 -1.53 9.52 30.59 0.29 -1.24 16 27 C -0.11 -1.80 2.70 -52.18 -0.14 -1.94 16 28 C -0.10 -2.01 8.09 71.98 0.58 -1.43 16 29 C -0.11 -1.43 9.85 71.98 0.71 -0.72 16 30 H 0.04 0.94 8.13 -2.39 -0.02 0.92 16 31 H 0.05 2.04 5.92 -2.39 -0.01 2.03 16 32 H 0.08 2.07 7.95 -2.39 -0.02 2.05 16 33 H 0.08 2.07 8.11 -2.38 -0.02 2.05 16 34 H 0.11 3.03 6.38 -2.39 -0.02 3.02 16 35 H 0.39 15.47 5.76 -92.71 -0.53 14.94 16 36 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.09 1.64 7.87 -2.39 -0.02 1.62 16 38 H 0.07 1.03 8.05 -2.39 -0.02 1.01 16 39 H 0.37 10.39 8.75 -74.06 -0.65 9.74 16 40 H 0.08 1.38 7.42 -2.39 -0.02 1.36 16 41 H 0.12 1.01 8.07 -2.39 -0.02 0.99 16 42 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 43 H 0.08 0.65 5.99 -2.39 -0.01 0.64 16 44 H 0.08 0.60 8.07 -2.39 -0.02 0.58 16 45 H 0.13 0.87 8.05 -2.39 -0.02 0.85 16 46 H 0.09 1.24 8.05 -2.38 -0.02 1.22 16 47 H 0.04 1.10 7.26 -2.38 -0.02 1.08 16 48 H 0.06 1.03 7.92 -2.39 -0.02 1.01 16 49 H 0.05 1.14 7.01 -2.39 -0.02 1.13 16 50 H 0.08 0.66 7.90 -2.39 -0.02 0.64 16 51 H 0.07 0.80 7.92 -2.39 -0.02 0.78 16 52 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -87.12 411.07 0.04 -87.08 By element: Atomic # 1 Polarization: 44.94 SS G_CDS: -0.31 Total: 44.63 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 7.86 Total: 17.40 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -7.71 Total: -120.65 kcal Atomic # 8 Polarization: -67.66 SS G_CDS: -1.70 Total: -69.36 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 1.90 Total: 40.91 kcal Total: -87.12 0.04 -87.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278855152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.862 kcal (2) G-P(sol) polarization free energy of solvation -87.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds