Wall clock time and date at job start Wed Apr 1 2020 01:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53039 * 109.45947 * 2 1 4 4 C 1.53192 * 109.31387 * 181.37324 * 3 2 1 5 5 N 1.46928 * 108.77548 * 305.36272 * 4 3 2 6 6 C 1.34774 * 120.63110 * 233.58200 * 5 4 3 7 7 O 1.21343 * 119.99971 * 354.96272 * 6 5 4 8 8 C 1.49450 * 119.99606 * 174.95281 * 6 5 4 9 9 O 1.21351 * 120.00109 * 275.22180 * 8 6 5 10 10 N 1.34780 * 119.99808 * 95.23467 * 8 6 5 11 11 C 1.46498 * 119.99945 * 4.99002 * 10 8 6 12 12 C 1.46497 * 120.00039 * 184.99993 * 10 8 6 13 13 C 1.52999 * 109.47475 * 89.99387 * 12 10 8 14 14 O 1.42900 * 109.46936 * 65.00069 * 13 12 10 15 15 C 1.42905 * 113.99678 * 180.02562 * 14 13 12 16 16 C 1.53004 * 109.46741 * 180.02562 * 15 14 13 17 17 N 1.46496 * 109.47265 * 64.99637 * 16 15 14 18 18 C 1.36942 * 120.00180 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99255 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99995 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99792 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00383 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47460 * 89.99582 * 22 20 18 24 24 H 1.48503 * 109.47264 * 209.99935 * 22 20 18 25 25 H 1.48506 * 109.47024 * 329.99635 * 22 20 18 26 26 C 1.46929 * 118.73450 * 53.86071 * 5 4 3 27 27 C 1.53041 * 109.45245 * 120.06032 * 2 1 3 28 28 H 1.08997 * 109.47134 * 60.00332 * 1 2 3 29 29 H 1.09000 * 109.46757 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47096 * 299.99813 * 1 2 3 31 31 H 1.09003 * 109.46230 * 240.02872 * 2 1 3 32 32 H 1.08997 * 109.49873 * 61.41590 * 3 2 1 33 33 H 1.09005 * 109.49638 * 301.32400 * 3 2 1 34 34 H 1.09000 * 109.58678 * 185.57427 * 4 3 2 35 35 H 1.08999 * 109.70208 * 65.22160 * 4 3 2 36 36 H 1.09005 * 109.47005 * 84.79392 * 11 10 8 37 37 H 1.08997 * 109.47573 * 204.79488 * 11 10 8 38 38 H 1.09004 * 109.47423 * 324.79527 * 11 10 8 39 39 H 1.09004 * 109.47166 * 209.99550 * 12 10 8 40 40 H 1.09003 * 109.47132 * 329.99347 * 12 10 8 41 41 H 1.08997 * 109.47284 * 185.00379 * 13 12 10 42 42 H 1.09002 * 109.47061 * 304.99983 * 13 12 10 43 43 H 1.09007 * 109.46956 * 299.99230 * 15 14 13 44 44 H 1.08996 * 109.47692 * 59.99523 * 15 14 13 45 45 H 1.09000 * 109.46984 * 184.99605 * 16 15 14 46 46 H 1.08999 * 109.47135 * 304.99470 * 16 15 14 47 47 H 0.97001 * 119.99973 * 0.02562 * 17 16 15 48 48 H 0.96996 * 120.00268 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.58773 * 65.92996 * 26 5 4 50 50 H 1.08997 * 109.58116 * 186.34961 * 26 5 4 51 51 H 1.08998 * 109.49763 * 298.57578 * 27 2 1 52 52 H 1.08998 * 109.49558 * 58.67034 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4430 0.0000 4 6 3.5714 1.4392 -0.0346 5 7 4.0677 0.6239 1.0824 6 6 4.9617 1.1277 1.9560 7 8 5.4335 2.2306 1.7732 8 6 5.3719 0.3279 3.1501 9 8 4.7002 0.3579 4.1603 10 7 6.4879 -0.4264 3.1049 11 6 7.3573 -0.3783 1.9268 12 6 6.8313 -1.2946 4.2338 13 6 6.1994 -2.6727 4.0282 14 8 6.7800 -3.2966 2.8812 15 6 6.2562 -4.5959 2.5987 16 6 6.9467 -5.1653 1.3578 17 7 8.3685 -5.3740 1.6426 18 6 9.1937 -5.8805 0.6742 19 1 8.7963 -6.1256 -0.2997 20 6 10.5410 -6.0777 0.9439 21 7 11.3342 -6.5640 0.0129 22 14 11.2283 -5.6530 2.6280 23 1 11.1319 -6.8395 3.5157 24 1 12.6511 -5.2490 2.4945 25 1 10.4485 -4.5327 3.2128 26 6 3.5754 -0.7531 1.2252 27 6 2.0397 -0.7228 1.2490 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8932 -0.5134 -0.8903 32 1 1.6975 1.9498 0.9022 33 1 1.6574 1.9640 -0.8778 34 1 3.9416 2.4596 0.0649 35 1 3.9166 1.0157 -0.9778 36 1 8.0490 0.4590 2.0197 37 1 7.9208 -1.3084 1.8528 38 1 6.7492 -0.2497 1.0314 39 1 7.9147 -1.3974 4.2967 40 1 6.4538 -0.8560 5.1576 41 1 6.3798 -3.2902 4.9081 42 1 5.1257 -2.5611 3.8767 43 1 6.4377 -5.2535 3.4489 44 1 5.1838 -4.5239 2.4175 45 1 6.4864 -6.1164 1.0901 46 1 6.8411 -4.4647 0.5295 47 1 8.7253 -5.1542 2.5174 48 1 12.2755 -6.7022 0.2014 49 1 3.9188 -1.3532 0.3826 50 1 3.9483 -1.1796 2.1564 51 1 1.6974 -0.1957 2.1395 52 1 1.6571 -1.7434 1.2602 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508178708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:14 Heat of formation + Delta-G solvation = -100.099490 kcal Electronic energy + Delta-G solvation = -31548.256804 eV Core-core repulsion = 27355.527994 eV Total energy + Delta-G solvation = -4192.728809 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.22480 -39.40456 -38.12756 -37.75613 -35.91085 -34.60633 -34.38800 -31.76403 -31.59964 -30.46037 -28.87095 -28.14912 -26.91338 -25.35097 -23.84680 -23.40791 -23.31548 -21.88441 -21.19113 -20.52176 -19.08754 -18.11432 -17.66374 -17.31565 -16.81184 -16.44778 -16.06906 -15.46537 -15.24123 -15.13177 -14.99717 -14.66698 -14.38188 -14.29171 -14.02294 -13.81533 -13.55532 -13.47180 -13.22644 -12.97549 -12.95147 -12.67465 -12.52175 -12.31396 -12.27654 -12.09304 -11.99270 -11.74324 -11.65078 -11.53182 -11.36488 -11.20151 -10.89457 -10.87656 -10.82574 -10.57991 -10.13030 -9.76922 -9.60679 -9.47265 -9.13652 -8.99241 -8.90906 -7.23153 -5.77094 -3.12141 1.84307 1.90686 2.38096 3.03179 3.37826 3.41901 3.45625 3.75644 3.89516 4.26110 4.34168 4.36496 4.59749 4.62644 4.82216 4.88250 4.91678 4.94595 5.04985 5.09682 5.18332 5.20176 5.21864 5.25827 5.33717 5.35571 5.39131 5.43907 5.46997 5.49958 5.52814 5.53474 5.59236 5.62622 5.68791 5.70939 5.78218 5.83075 5.94543 5.99032 6.03701 6.14865 6.44906 6.58386 6.79060 6.90375 7.33718 7.52643 7.58004 7.98587 8.41835 9.21655 9.93959 10.14358 11.41333 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013250 B = 0.002834 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.635513 B = 9876.360626 C =10594.860053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.130 4.130 4 C 0.109 3.891 5 N -0.595 5.595 6 C 0.521 3.479 7 O -0.516 6.516 8 C 0.515 3.485 9 O -0.520 6.520 10 N -0.588 5.588 11 C 0.075 3.925 12 C 0.115 3.885 13 C 0.044 3.956 14 O -0.374 6.374 15 C 0.054 3.946 16 C 0.160 3.840 17 N -0.751 5.751 18 C -0.243 4.243 19 H 0.089 0.911 20 C 0.004 3.996 21 N -0.935 5.935 22 Si 0.884 3.116 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.274 1.274 26 C 0.105 3.895 27 C -0.130 4.130 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.047 0.953 45 H 0.040 0.960 46 H 0.033 0.967 47 H 0.364 0.636 48 H 0.259 0.741 49 H 0.082 0.918 50 H 0.082 0.918 51 H 0.070 0.930 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.236 14.381 3.218 25.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.168 4.168 4 C -0.012 4.012 5 N -0.330 5.330 6 C 0.303 3.697 7 O -0.390 6.390 8 C 0.298 3.702 9 O -0.395 6.395 10 N -0.321 5.321 11 C -0.067 4.067 12 C -0.007 4.007 13 C -0.034 4.034 14 O -0.293 6.293 15 C -0.022 4.022 16 C 0.033 3.967 17 N -0.397 5.397 18 C -0.373 4.373 19 H 0.107 0.893 20 C -0.192 4.192 21 N -0.583 5.583 22 Si 0.714 3.286 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.200 1.200 26 C -0.017 4.017 27 C -0.168 4.168 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.197 0.803 48 H 0.069 0.931 49 H 0.100 0.900 50 H 0.100 0.900 51 H 0.089 0.911 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.103 14.999 3.326 26.103 hybrid contribution 0.433 0.006 1.283 1.354 sum -20.670 15.004 4.609 25.954 Atomic orbital electron populations 1.21815 0.94743 1.01952 1.01874 1.21149 0.96002 0.95762 0.98355 1.22001 0.94650 0.97067 1.03055 1.21730 0.94050 0.97074 0.88390 1.48101 1.42735 1.14703 1.27431 1.20252 0.79765 0.87063 0.82608 1.90791 1.54459 1.20254 1.73544 1.20214 0.81809 0.79442 0.88763 1.90790 1.53739 1.63315 1.31662 1.47805 1.23476 1.41157 1.19701 1.22006 0.94449 1.04438 0.85841 1.21705 1.01897 0.87856 0.89259 1.22882 0.97010 0.93592 0.89943 1.88005 1.64021 1.31289 1.45974 1.22861 0.96665 0.83688 0.99013 1.20658 0.85605 0.96968 0.93492 1.42627 1.04307 1.78776 1.14010 1.19054 0.89851 1.34110 0.94306 0.89315 1.24663 0.96041 1.01148 0.97330 1.69704 1.04907 1.51007 1.32707 0.86539 0.78388 0.78332 0.85307 1.21246 1.21813 1.19976 1.21954 0.94977 0.81616 1.03178 1.22061 0.94256 1.01660 0.98805 0.92521 0.92448 0.92678 0.90616 0.91330 0.90298 0.88696 0.90597 0.91964 0.88017 0.91629 0.88628 0.88106 0.92121 0.93387 0.93373 0.93461 0.94201 0.94893 0.80333 0.93084 0.89961 0.89978 0.91113 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.19 37.16 0.34 -0.45 16 2 C -0.09 -0.58 2.68 -90.58 -0.24 -0.82 16 3 C -0.13 -0.85 5.36 -26.61 -0.14 -1.00 16 4 C 0.11 0.91 6.42 -3.71 -0.02 0.88 16 5 N -0.59 -6.14 2.97 -173.01 -0.51 -6.65 16 6 C 0.52 6.94 5.69 -11.59 -0.07 6.88 16 7 O -0.52 -8.18 16.53 5.50 0.09 -8.09 16 8 C 0.52 7.05 5.45 -11.58 -0.06 6.98 16 9 O -0.52 -8.14 16.65 5.50 0.09 -8.05 16 10 N -0.59 -7.22 2.84 -182.08 -0.52 -7.74 16 11 C 0.08 0.88 10.00 59.85 0.60 1.48 16 12 C 0.11 1.29 5.83 -4.04 -0.02 1.27 16 13 C 0.04 0.50 6.28 37.16 0.23 0.73 16 14 O -0.37 -5.41 9.21 -35.23 -0.32 -5.73 16 15 C 0.05 0.77 6.07 37.16 0.23 1.00 16 16 C 0.16 2.92 6.65 -4.04 -0.03 2.89 16 17 N -0.75 -17.49 5.35 -59.91 -0.32 -17.82 16 18 C -0.24 -6.81 10.47 -15.06 -0.16 -6.96 16 19 H 0.09 2.65 8.06 -52.48 -0.42 2.22 16 20 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 21 N -0.94 -29.23 13.97 55.49 0.78 -28.46 16 22 Si 0.88 21.95 27.74 -169.99 -4.71 17.24 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.27 -6.39 6.52 56.52 0.37 -6.02 16 26 C 0.11 0.92 6.38 -3.49 -0.02 0.89 16 27 C -0.13 -0.93 5.38 -26.39 -0.14 -1.07 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.90 7.04 -51.93 -0.37 0.53 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 1.31 7.22 -51.93 -0.38 0.94 16 38 H 0.06 0.74 6.99 -51.93 -0.36 0.38 16 39 H 0.10 1.03 8.07 -51.93 -0.42 0.61 16 40 H 0.10 1.08 7.36 -51.93 -0.38 0.69 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.36 8.39 5.53 -40.82 -0.23 8.16 16 48 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 49 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.08 0.82 6.31 -51.93 -0.33 0.49 16 51 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 52 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 416.65 15.07 6.28 6.28 Total: -1.00 -34.79 416.65 -8.00 -42.79 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -9.24 Total: 3.50 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 0.39 Total: 12.73 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: -0.58 Total: -60.67 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.14 Total: -21.87 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.24 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.79 -8.00 -42.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508178708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.311 kcal (2) G-P(sol) polarization free energy of solvation -34.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds