Wall clock time and date at job start Wed Apr 1 2020 01:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53039 * 109.45947 * 2 1 4 4 C 1.53192 * 109.31387 * 181.37324 * 3 2 1 5 5 N 1.46928 * 108.77548 * 305.36272 * 4 3 2 6 6 C 1.34774 * 120.63110 * 233.58200 * 5 4 3 7 7 O 1.21343 * 119.99971 * 354.96272 * 6 5 4 8 8 C 1.49450 * 119.99606 * 174.95281 * 6 5 4 9 9 O 1.21351 * 120.00109 * 275.22180 * 8 6 5 10 10 N 1.34780 * 119.99808 * 95.23467 * 8 6 5 11 11 C 1.46498 * 119.99945 * 4.99002 * 10 8 6 12 12 C 1.46497 * 120.00039 * 184.99993 * 10 8 6 13 13 C 1.52999 * 109.47475 * 89.99387 * 12 10 8 14 14 O 1.42900 * 109.46936 * 65.00069 * 13 12 10 15 15 C 1.42905 * 113.99678 * 180.02562 * 14 13 12 16 16 C 1.53004 * 109.46741 * 180.02562 * 15 14 13 17 17 N 1.46496 * 109.47265 * 64.99637 * 16 15 14 18 18 C 1.36942 * 120.00180 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99255 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99995 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99792 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00383 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47460 * 89.99582 * 22 20 18 24 24 H 1.48503 * 109.47264 * 209.99935 * 22 20 18 25 25 H 1.48506 * 109.47024 * 329.99635 * 22 20 18 26 26 C 1.46929 * 118.73450 * 53.86071 * 5 4 3 27 27 C 1.53041 * 109.45245 * 120.06032 * 2 1 3 28 28 H 1.08997 * 109.47134 * 60.00332 * 1 2 3 29 29 H 1.09000 * 109.46757 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47096 * 299.99813 * 1 2 3 31 31 H 1.09003 * 109.46230 * 240.02872 * 2 1 3 32 32 H 1.08997 * 109.49873 * 61.41590 * 3 2 1 33 33 H 1.09005 * 109.49638 * 301.32400 * 3 2 1 34 34 H 1.09000 * 109.58678 * 185.57427 * 4 3 2 35 35 H 1.08999 * 109.70208 * 65.22160 * 4 3 2 36 36 H 1.09005 * 109.47005 * 84.79392 * 11 10 8 37 37 H 1.08997 * 109.47573 * 204.79488 * 11 10 8 38 38 H 1.09004 * 109.47423 * 324.79527 * 11 10 8 39 39 H 1.09004 * 109.47166 * 209.99550 * 12 10 8 40 40 H 1.09003 * 109.47132 * 329.99347 * 12 10 8 41 41 H 1.08997 * 109.47284 * 185.00379 * 13 12 10 42 42 H 1.09002 * 109.47061 * 304.99983 * 13 12 10 43 43 H 1.09007 * 109.46956 * 299.99230 * 15 14 13 44 44 H 1.08996 * 109.47692 * 59.99523 * 15 14 13 45 45 H 1.09000 * 109.46984 * 184.99605 * 16 15 14 46 46 H 1.08999 * 109.47135 * 304.99470 * 16 15 14 47 47 H 0.97001 * 119.99973 * 0.02562 * 17 16 15 48 48 H 0.96996 * 120.00268 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.58773 * 65.92996 * 26 5 4 50 50 H 1.08997 * 109.58116 * 186.34961 * 26 5 4 51 51 H 1.08998 * 109.49763 * 298.57578 * 27 2 1 52 52 H 1.08998 * 109.49558 * 58.67034 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4430 0.0000 4 6 3.5714 1.4392 -0.0346 5 7 4.0677 0.6239 1.0824 6 6 4.9617 1.1277 1.9560 7 8 5.4335 2.2306 1.7732 8 6 5.3719 0.3279 3.1501 9 8 4.7002 0.3579 4.1603 10 7 6.4879 -0.4264 3.1049 11 6 7.3573 -0.3783 1.9268 12 6 6.8313 -1.2946 4.2338 13 6 6.1994 -2.6727 4.0282 14 8 6.7800 -3.2966 2.8812 15 6 6.2562 -4.5959 2.5987 16 6 6.9467 -5.1653 1.3578 17 7 8.3685 -5.3740 1.6426 18 6 9.1937 -5.8805 0.6742 19 1 8.7963 -6.1256 -0.2997 20 6 10.5410 -6.0777 0.9439 21 7 11.3342 -6.5640 0.0129 22 14 11.2283 -5.6530 2.6280 23 1 11.1319 -6.8395 3.5157 24 1 12.6511 -5.2490 2.4945 25 1 10.4485 -4.5327 3.2128 26 6 3.5754 -0.7531 1.2252 27 6 2.0397 -0.7228 1.2490 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8932 -0.5134 -0.8903 32 1 1.6975 1.9498 0.9022 33 1 1.6574 1.9640 -0.8778 34 1 3.9416 2.4596 0.0649 35 1 3.9166 1.0157 -0.9778 36 1 8.0490 0.4590 2.0197 37 1 7.9208 -1.3084 1.8528 38 1 6.7492 -0.2497 1.0314 39 1 7.9147 -1.3974 4.2967 40 1 6.4538 -0.8560 5.1576 41 1 6.3798 -3.2902 4.9081 42 1 5.1257 -2.5611 3.8767 43 1 6.4377 -5.2535 3.4489 44 1 5.1838 -4.5239 2.4175 45 1 6.4864 -6.1164 1.0901 46 1 6.8411 -4.4647 0.5295 47 1 8.7253 -5.1542 2.5174 48 1 12.2755 -6.7022 0.2014 49 1 3.9188 -1.3532 0.3826 50 1 3.9483 -1.1796 2.1564 51 1 1.6974 -0.1957 2.1395 52 1 1.6571 -1.7434 1.2602 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508178708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:14 Heat of formation + Delta-G solvation = -124.053813 kcal Electronic energy + Delta-G solvation = -31549.295541 eV Core-core repulsion = 27355.527994 eV Total energy + Delta-G solvation = -4193.767547 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.19024 -40.29735 -39.11299 -38.72876 -37.07033 -36.27169 -35.10997 -33.62921 -32.31393 -31.60964 -29.77166 -29.40351 -27.88831 -26.23902 -25.16189 -24.50953 -24.13646 -22.79320 -22.66475 -21.20082 -19.93841 -19.72057 -19.04989 -18.32203 -17.79279 -17.47993 -17.16111 -16.61328 -16.36247 -16.03191 -15.95901 -15.67416 -15.52961 -15.23196 -14.98744 -14.85323 -14.64722 -14.55135 -14.36548 -14.30749 -14.04653 -13.72160 -13.66350 -13.52259 -13.11635 -12.91520 -12.82094 -12.79980 -12.78062 -12.61827 -12.47927 -12.26033 -12.12292 -11.92342 -11.87261 -11.70159 -11.44465 -11.36978 -10.97885 -10.81083 -10.48870 -9.98839 -9.93853 -9.24980 -7.99405 -5.31592 0.85134 0.91393 1.38830 1.41100 1.43896 1.52225 2.14647 2.52096 2.73521 2.96842 3.33175 3.65282 3.71843 3.78482 3.79967 3.98181 3.99569 4.01209 4.17224 4.23500 4.27608 4.30721 4.41397 4.45107 4.47881 4.49894 4.54315 4.62863 4.65530 4.71836 4.72738 4.76935 4.84310 4.84767 4.91489 5.01990 5.03569 5.04604 5.12606 5.15809 5.20644 5.33847 5.36947 5.49475 5.78862 5.89163 5.91905 6.23556 6.32558 6.54617 6.57913 7.12548 7.89449 8.08554 9.22221 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013250 B = 0.002834 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.635513 B = 9876.360626 C =10594.860053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.124 4.124 4 C 0.104 3.896 5 N -0.587 5.587 6 C 0.515 3.485 7 O -0.551 6.551 8 C 0.516 3.484 9 O -0.545 6.545 10 N -0.583 5.583 11 C 0.080 3.920 12 C 0.111 3.889 13 C 0.046 3.954 14 O -0.394 6.394 15 C 0.064 3.936 16 C 0.154 3.846 17 N -0.754 5.754 18 C -0.230 4.230 19 H 0.057 0.943 20 C -0.066 4.066 21 N -0.986 5.986 22 Si 0.955 3.045 23 H -0.280 1.280 24 H -0.300 1.300 25 H -0.248 1.248 26 C 0.102 3.898 27 C -0.125 4.125 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.081 0.919 45 H 0.046 0.954 46 H 0.028 0.972 47 H 0.367 0.633 48 H 0.257 0.743 49 H 0.096 0.904 50 H 0.070 0.930 51 H 0.056 0.944 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.947 14.455 4.224 27.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.162 4.162 4 C -0.017 4.017 5 N -0.320 5.320 6 C 0.297 3.703 7 O -0.429 6.429 8 C 0.299 3.701 9 O -0.422 6.422 10 N -0.316 5.316 11 C -0.062 4.062 12 C -0.010 4.010 13 C -0.031 4.031 14 O -0.314 6.314 15 C -0.012 4.012 16 C 0.028 3.972 17 N -0.400 5.400 18 C -0.361 4.361 19 H 0.075 0.925 20 C -0.258 4.258 21 N -0.637 5.637 22 Si 0.782 3.218 23 H -0.206 1.206 24 H -0.227 1.227 25 H -0.172 1.172 26 C -0.020 4.020 27 C -0.163 4.163 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.064 0.936 46 H 0.046 0.954 47 H 0.201 0.799 48 H 0.065 0.935 49 H 0.114 0.886 50 H 0.089 0.911 51 H 0.075 0.925 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.887 15.060 4.333 27.738 hybrid contribution 0.863 -0.039 0.867 1.223 sum -22.025 15.021 5.200 27.162 Atomic orbital electron populations 1.21787 0.93976 1.02345 1.02007 1.21151 0.96574 0.95135 0.98120 1.21976 0.93139 0.97723 1.03324 1.21929 0.95289 0.96211 0.88268 1.48257 1.41375 1.15468 1.26915 1.20295 0.80293 0.86672 0.82995 1.90768 1.56060 1.21542 1.74526 1.20292 0.81892 0.79388 0.88561 1.90768 1.54593 1.64417 1.32458 1.47877 1.22917 1.40756 1.20037 1.21958 0.94341 1.04059 0.85834 1.21839 1.02367 0.87746 0.89065 1.22957 0.97126 0.93431 0.89581 1.87967 1.64767 1.31338 1.47302 1.22715 0.97764 0.83692 0.97076 1.20859 0.83205 0.97438 0.95739 1.42649 1.05941 1.78335 1.13066 1.19054 0.90465 1.32584 0.93997 0.92520 1.25499 0.96566 1.02076 1.01617 1.69889 1.05120 1.53380 1.35335 0.85401 0.77159 0.78914 0.80303 1.20599 1.22660 1.17229 1.22111 0.96099 0.80623 1.03122 1.22044 0.92919 1.02585 0.98771 0.91722 0.91932 0.93251 0.89624 0.92684 0.88339 0.90145 0.88827 0.91509 0.88871 0.91431 0.88017 0.87529 0.90366 0.92816 0.92609 0.90122 0.93583 0.95410 0.79938 0.93464 0.88588 0.91142 0.92548 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.19 71.98 0.66 -0.56 16 2 C -0.09 -0.91 2.68 -10.77 -0.03 -0.94 16 3 C -0.12 -1.43 5.36 30.67 0.16 -1.27 16 4 C 0.10 1.62 6.42 86.36 0.55 2.17 16 5 N -0.59 -11.64 2.97 -819.66 -2.43 -14.07 16 6 C 0.51 13.68 5.69 87.27 0.50 14.18 16 7 O -0.55 -17.77 16.53 -3.22 -0.05 -17.82 16 8 C 0.52 13.84 5.45 87.27 0.48 14.32 16 9 O -0.54 -16.86 16.65 -3.25 -0.05 -16.91 16 10 N -0.58 -13.67 2.84 -848.34 -2.41 -16.08 16 11 C 0.08 1.82 10.00 127.77 1.28 3.09 16 12 C 0.11 2.28 5.83 86.38 0.50 2.79 16 13 C 0.05 0.93 6.28 71.98 0.45 1.38 16 14 O -0.39 -10.23 9.21 -148.98 -1.37 -11.61 16 15 C 0.06 1.59 6.07 71.98 0.44 2.03 16 16 C 0.15 5.29 6.65 86.38 0.57 5.86 16 17 N -0.75 -33.88 5.35 -343.45 -1.84 -35.72 16 18 C -0.23 -12.88 10.47 84.03 0.88 -12.00 16 19 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 20 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 21 N -0.99 -62.95 13.97 21.65 0.30 -62.65 16 22 Si 0.95 44.96 27.74 68.60 1.90 46.86 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 24 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 25 H -0.25 -10.47 6.52 99.48 0.65 -9.83 16 26 C 0.10 1.61 6.38 86.51 0.55 2.16 16 27 C -0.13 -1.55 5.38 30.82 0.17 -1.38 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.08 1.52 7.04 -2.39 -0.02 1.50 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.09 2.30 7.22 -2.39 -0.02 2.28 16 38 H 0.07 1.48 6.99 -2.39 -0.02 1.47 16 39 H 0.10 1.97 8.07 -2.38 -0.02 1.95 16 40 H 0.11 2.09 7.36 -2.39 -0.02 2.07 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.37 15.93 5.53 -92.71 -0.51 15.42 16 48 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 49 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.07 1.30 6.31 -2.39 -0.02 1.28 16 51 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -76.15 416.65 2.00 -74.15 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.32 Total: 25.43 kcal Atomic # 6 Polarization: 20.78 SS G_CDS: 7.63 Total: 28.41 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -6.37 Total: -128.52 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -1.48 Total: -46.34 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.90 Total: 46.86 kcal Total: -76.15 2.00 -74.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508178708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.906 kcal (2) G-P(sol) polarization free energy of solvation -76.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds