Wall clock time and date at job start Wed Apr 1 2020 01:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47194 * 2 1 4 4 C 1.50703 * 109.53941 * 62.82819 * 3 2 1 5 5 O 1.21282 * 120.00033 * 247.06575 * 4 3 2 6 6 N 1.34781 * 120.00132 * 67.07122 * 4 3 2 7 7 C 1.46495 * 120.00091 * 175.35560 * 6 4 3 8 8 C 1.52999 * 109.47496 * 179.97438 * 7 6 4 9 9 N 1.46896 * 109.47490 * 180.02562 * 8 7 6 10 10 C 1.46905 * 110.99939 * 293.95641 * 9 8 7 11 11 C 1.46896 * 111.00124 * 170.00552 * 9 8 7 12 12 C 1.50706 * 109.47117 * 190.00334 * 11 9 8 13 13 O 1.21292 * 119.99880 * 359.97438 * 12 11 9 14 14 N 1.34772 * 119.99859 * 180.02562 * 12 11 9 15 15 C 1.37095 * 119.99954 * 179.97438 * 14 12 11 16 16 H 1.08002 * 119.99882 * 359.97438 * 15 14 12 17 17 C 1.38948 * 120.00026 * 179.97438 * 15 14 12 18 18 N 1.31415 * 120.00086 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99991 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47136 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47015 * 119.99817 * 19 17 15 22 22 H 1.48500 * 109.47033 * 239.99596 * 19 17 15 23 23 C 1.53185 * 109.54433 * 183.00103 * 3 2 1 24 24 C 1.53281 * 109.06201 * 176.85660 * 23 3 2 25 25 O 1.42908 * 109.45838 * 302.44409 * 24 23 3 26 26 C 1.42902 * 114.09358 * 61.16517 * 25 24 23 27 27 C 1.53089 * 109.41613 * 298.83420 * 26 25 24 28 28 H 1.08999 * 109.47150 * 176.54665 * 1 2 3 29 29 H 1.08997 * 109.47209 * 296.54982 * 1 2 3 30 30 H 1.09007 * 109.46909 * 56.55415 * 1 2 3 31 31 H 1.09000 * 109.47248 * 239.99921 * 2 1 3 32 32 H 1.08999 * 109.47065 * 120.00220 * 2 1 3 33 33 H 0.96993 * 119.99861 * 355.35760 * 6 4 3 34 34 H 1.09000 * 109.47550 * 299.99931 * 7 6 4 35 35 H 1.09004 * 109.46987 * 59.99590 * 7 6 4 36 36 H 1.09000 * 109.47049 * 300.00709 * 8 7 6 37 37 H 1.08999 * 109.46517 * 60.00220 * 8 7 6 38 38 H 1.08998 * 109.46874 * 59.99788 * 10 9 8 39 39 H 1.08999 * 109.46866 * 179.97438 * 10 9 8 40 40 H 1.09004 * 109.47231 * 299.99948 * 10 9 8 41 41 H 1.09008 * 109.47071 * 309.99759 * 11 9 8 42 42 H 1.08997 * 109.47582 * 69.99668 * 11 9 8 43 43 H 0.97007 * 120.00518 * 359.97438 * 14 12 11 44 44 H 0.97004 * 119.99699 * 179.97438 * 18 17 15 45 45 H 1.09001 * 109.52126 * 296.84800 * 23 3 2 46 46 H 1.08999 * 109.51564 * 57.03491 * 23 3 2 47 47 H 1.08999 * 109.45313 * 182.45171 * 24 23 3 48 48 H 1.08994 * 109.47007 * 62.45130 * 24 23 3 49 49 H 1.09004 * 109.47748 * 178.85578 * 26 25 24 50 50 H 1.08996 * 109.49478 * 58.82955 * 26 25 24 51 51 H 1.08999 * 109.52315 * 297.70821 * 27 26 25 52 52 H 1.08991 * 109.57687 * 177.55226 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5965 2.1339 1.2635 5 8 0.7943 3.0418 1.2084 6 7 2.0916 1.7434 2.4547 7 6 1.7397 2.4800 3.6712 8 6 2.4284 1.8347 4.8754 9 7 2.0751 2.5729 6.0953 10 6 2.6266 3.9342 6.0652 11 6 2.5200 1.8512 7.2949 12 6 1.9326 2.5031 8.5201 13 8 1.2144 3.4738 8.4052 14 7 2.2061 2.0082 9.7434 15 6 1.6722 2.6015 10.8580 16 1 1.0327 3.4658 10.7558 17 6 1.9537 2.0909 12.1192 18 7 2.7314 1.0389 12.2436 19 14 1.2268 2.8999 13.6380 20 1 0.3925 4.0587 13.2303 21 1 0.3865 1.9169 14.3682 22 1 2.3239 3.3673 14.5230 23 6 3.5700 1.4451 -0.0756 24 6 4.0648 2.8937 -0.1543 25 8 3.4793 3.5358 -1.2888 26 6 2.0524 3.6033 -1.2489 27 6 1.4766 2.1853 -1.2153 28 1 -0.3633 -1.0258 -0.0619 29 1 -0.3633 0.4593 0.9193 30 1 -0.3633 0.5664 -0.8576 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.6808 0.9747 2.5066 34 1 2.0672 3.5153 3.5766 35 1 0.6593 2.4522 3.8130 36 1 2.1007 0.7995 4.9698 37 1 3.5088 1.8623 4.7337 38 1 2.2261 4.4695 5.2043 39 1 2.3498 4.4587 6.9797 40 1 3.7129 3.8846 5.9889 41 1 2.1868 0.8148 7.2398 42 1 3.6080 1.8804 7.3540 43 1 2.7808 1.2321 9.8353 44 1 2.9283 0.6827 13.1242 45 1 3.9794 0.9658 0.8137 46 1 3.8916 0.9018 -0.9641 47 1 5.1504 2.9016 -0.2522 48 1 3.7778 3.4254 0.7528 49 1 1.6883 4.1226 -2.1355 50 1 1.7387 4.1444 -0.3563 51 1 1.7561 1.6569 -2.1269 52 1 0.3903 2.2339 -1.1411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663303872.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:19 Heat of formation + Delta-G solvation = -147.386630 kcal Electronic energy + Delta-G solvation = -30629.635429 eV Core-core repulsion = 26434.856096 eV Total energy + Delta-G solvation = -4194.779334 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.05114 -40.40801 -39.30914 -38.15366 -36.50577 -36.04385 -35.53280 -33.27639 -32.35385 -31.57405 -30.64065 -29.10970 -27.19772 -26.63552 -25.35932 -24.69400 -23.26457 -22.62798 -22.33335 -20.99619 -20.28891 -19.85510 -17.96234 -17.71210 -17.38186 -17.11060 -16.93971 -16.84677 -16.55792 -16.35918 -16.09572 -15.79432 -15.57378 -15.34488 -15.11004 -14.97570 -14.68166 -14.61634 -14.16385 -13.96837 -13.78592 -13.46603 -13.29483 -13.28376 -13.04605 -12.99298 -12.91778 -12.59069 -12.56791 -12.42674 -12.39589 -12.24138 -12.16892 -12.10785 -11.95494 -11.46546 -11.43276 -11.35282 -10.75755 -10.39122 -10.28803 -10.10949 -9.99099 -9.24839 -8.46458 -5.94451 1.36151 1.41627 1.55386 1.60240 1.98008 2.06620 2.30189 2.88281 2.93436 3.20671 3.41277 3.46783 3.55274 3.72747 3.81252 4.00026 4.00856 4.06131 4.24793 4.25141 4.31138 4.35315 4.44471 4.46187 4.47940 4.52618 4.54326 4.61444 4.62521 4.66197 4.78072 4.82116 4.85743 4.91696 4.94029 5.01379 5.04003 5.12470 5.14685 5.18915 5.22666 5.37117 5.40333 5.42082 5.84598 6.04321 6.16126 6.21253 6.51666 6.61912 7.14372 7.22889 7.57912 8.14407 8.71077 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025360 B = 0.001822 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.834261 B =15365.586511 C =15617.997674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.104 4.104 3 C -0.075 4.075 4 C 0.521 3.479 5 O -0.578 6.578 6 N -0.714 5.714 7 C 0.132 3.868 8 C 0.053 3.947 9 N -0.540 5.540 10 C 0.026 3.974 11 C 0.061 3.939 12 C 0.439 3.561 13 O -0.617 6.617 14 N -0.574 5.574 15 C -0.330 4.330 16 H 0.077 0.923 17 C -0.013 4.013 18 N -0.920 5.920 19 Si 0.991 3.009 20 H -0.275 1.275 21 H -0.271 1.271 22 H -0.271 1.271 23 C -0.138 4.138 24 C 0.049 3.951 25 O -0.398 6.398 26 C 0.050 3.950 27 C -0.128 4.128 28 H 0.071 0.929 29 H 0.029 0.971 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.415 0.585 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.036 0.964 41 H 0.115 0.885 42 H 0.074 0.926 43 H 0.397 0.603 44 H 0.277 0.723 45 H 0.101 0.899 46 H 0.104 0.896 47 H 0.115 0.885 48 H 0.030 0.970 49 H 0.101 0.899 50 H 0.041 0.959 51 H 0.097 0.903 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.939 -7.414 -28.039 29.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.142 4.142 3 C -0.078 4.078 4 C 0.309 3.691 5 O -0.457 6.457 6 N -0.367 5.367 7 C 0.007 3.993 8 C -0.074 4.074 9 N -0.264 5.264 10 C -0.122 4.122 11 C -0.070 4.070 12 C 0.227 3.773 13 O -0.503 6.503 14 N -0.212 5.212 15 C -0.460 4.460 16 H 0.095 0.905 17 C -0.213 4.213 18 N -0.561 5.561 19 Si 0.815 3.185 20 H -0.200 1.200 21 H -0.196 1.196 22 H -0.196 1.196 23 C -0.175 4.175 24 C -0.027 4.027 25 O -0.317 6.317 26 C -0.027 4.027 27 C -0.166 4.166 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.252 0.748 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.133 0.867 42 H 0.092 0.908 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.133 0.867 48 H 0.048 0.952 49 H 0.119 0.881 50 H 0.059 0.941 51 H 0.115 0.885 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.566 -6.105 -28.092 29.108 hybrid contribution 0.515 -0.069 1.505 1.592 sum 5.082 -6.175 -26.587 27.764 Atomic orbital electron populations 1.21881 0.96255 1.02432 1.01167 1.21602 0.95663 0.92058 1.04876 1.21008 0.97745 0.97559 0.91510 1.21018 0.79764 0.82721 0.85642 1.90682 1.35173 1.32384 1.87494 1.45779 1.51091 1.33832 1.05982 1.21050 0.99617 0.95363 0.83282 1.22245 0.99028 0.98552 0.87623 1.61324 1.61065 1.02938 1.01115 1.22447 0.96848 0.90075 1.02861 1.21736 0.98828 0.98721 0.87723 1.20847 0.84949 0.86394 0.85136 1.90480 1.42553 1.30521 1.86709 1.41927 1.45034 1.29490 1.04758 1.19657 1.28394 1.12777 0.85147 0.90533 1.25998 0.97135 0.96800 1.01359 1.69671 1.37070 1.23427 1.25910 0.84903 0.78144 0.78085 0.77399 1.20011 1.19619 1.19595 1.22357 0.91687 0.97629 1.05857 1.22795 0.99517 0.92373 0.88023 1.87891 1.20374 1.79535 1.43944 1.22753 0.80384 0.97128 1.02426 1.22075 1.01259 0.95852 0.97406 0.90989 0.95177 0.92247 0.88243 0.89862 0.74771 0.92734 0.93023 0.88344 0.91904 0.91103 0.92606 0.94560 0.86690 0.90846 0.76922 0.91335 0.88066 0.87794 0.86721 0.95210 0.88126 0.94101 0.88498 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.33 71.98 0.67 -1.37 16 2 C -0.10 -0.90 4.98 30.59 0.15 -0.75 16 3 C -0.08 -0.96 0.43 -52.81 -0.02 -0.98 16 4 C 0.52 10.39 3.97 87.66 0.35 10.74 16 5 O -0.58 -17.04 14.14 -3.03 -0.04 -17.09 16 6 N -0.71 -11.55 5.35 -463.06 -2.48 -14.03 16 7 C 0.13 2.92 5.60 86.38 0.48 3.40 16 8 C 0.05 1.07 5.07 86.30 0.44 1.51 16 9 N -0.54 -16.56 4.50 -927.04 -4.17 -20.73 16 10 C 0.03 0.81 8.96 127.69 1.14 1.96 16 11 C 0.06 1.97 5.45 85.56 0.47 2.44 16 12 C 0.44 20.57 7.48 87.66 0.66 21.23 16 13 O -0.62 -34.06 13.91 -3.07 -0.04 -34.10 16 14 N -0.57 -29.05 5.29 -306.99 -1.62 -30.67 16 15 C -0.33 -18.68 9.68 84.04 0.81 -17.87 16 16 H 0.08 4.67 7.16 -2.91 -0.02 4.64 16 17 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 18 N -0.92 -49.09 13.05 21.66 0.28 -48.81 16 19 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 23 C -0.14 -1.22 4.82 30.75 0.15 -1.07 16 24 C 0.05 0.71 6.62 72.08 0.48 1.19 16 25 O -0.40 -7.78 10.77 -148.98 -1.60 -9.38 16 26 C 0.05 0.95 6.56 72.01 0.47 1.42 16 27 C -0.13 -1.92 4.03 30.68 0.12 -1.79 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.03 0.54 7.43 -2.39 -0.02 0.52 16 30 H 0.06 0.78 6.26 -2.38 -0.01 0.76 16 31 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.08 0.50 7.89 -2.39 -0.02 0.48 16 33 H 0.41 3.73 7.34 -92.71 -0.68 3.05 16 34 H 0.05 1.38 6.55 -2.39 -0.02 1.36 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.10 1.64 7.93 -2.39 -0.02 1.62 16 37 H 0.06 0.99 8.12 -2.39 -0.02 0.97 16 38 H 0.07 2.07 6.47 -2.39 -0.02 2.06 16 39 H 0.06 2.26 5.82 -2.39 -0.01 2.25 16 40 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.12 3.15 7.93 -2.38 -0.02 3.13 16 42 H 0.07 2.05 8.12 -2.39 -0.02 2.04 16 43 H 0.40 18.85 7.90 -92.70 -0.73 18.12 16 44 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 45 H 0.10 0.44 7.22 -2.39 -0.02 0.42 16 46 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.03 0.54 7.38 -2.39 -0.02 0.52 16 49 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.04 1.02 6.07 -2.39 -0.01 1.01 16 51 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.07 1.30 6.28 -2.39 -0.02 1.28 16 Total: -1.00 -75.93 401.69 -1.29 -77.22 By element: Atomic # 1 Polarization: 33.24 SS G_CDS: -0.48 Total: 32.76 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 6.84 Total: 19.82 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -7.99 Total: -114.24 kcal Atomic # 8 Polarization: -58.88 SS G_CDS: -1.69 Total: -60.57 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -75.93 -1.29 -77.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663303872.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.164 kcal (2) G-P(sol) polarization free energy of solvation -75.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds