Wall clock time and date at job start Wed Apr 1 2020 00:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46967 * 2 1 4 4 C 1.53002 * 109.46930 * 240.00063 * 2 1 3 5 5 O 1.45200 * 109.47224 * 120.00182 * 2 1 3 6 6 C 1.34637 * 117.00029 * 60.00054 * 5 2 1 7 7 O 1.21514 * 120.00121 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99714 * 180.02562 * 6 5 2 9 9 C 1.46503 * 119.99700 * 179.97438 * 8 6 5 10 10 C 1.53124 * 109.52233 * 204.99865 * 9 8 6 11 11 C 1.53031 * 109.27814 * 182.38157 * 10 9 8 12 12 N 1.46847 * 109.52813 * 59.17740 * 11 10 9 13 13 C 1.46894 * 111.00173 * 174.15929 * 12 11 10 14 14 C 1.50697 * 109.47436 * 293.61382 * 13 12 11 15 15 O 1.21284 * 120.00073 * 353.73180 * 14 13 12 16 16 N 1.34778 * 119.99898 * 173.45699 * 14 13 12 17 17 C 1.46497 * 119.99797 * 180.27352 * 16 14 13 18 18 C 1.50705 * 109.47367 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99638 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00160 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00231 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99960 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46900 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47326 * 119.99823 * 22 20 18 25 25 H 1.48496 * 109.46897 * 240.00129 * 22 20 18 26 26 C 1.46847 * 111.19736 * 298.26116 * 12 11 10 27 27 C 1.53039 * 109.52415 * 61.74168 * 26 12 11 28 28 H 1.08997 * 109.47159 * 299.99772 * 1 2 3 29 29 H 1.08996 * 109.47215 * 60.00203 * 1 2 3 30 30 H 1.09004 * 109.46521 * 180.02562 * 1 2 3 31 31 H 1.08989 * 109.46723 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46725 * 300.00070 * 3 2 1 33 33 H 1.08997 * 109.46995 * 60.00128 * 3 2 1 34 34 H 1.08998 * 109.47273 * 300.00034 * 4 2 1 35 35 H 1.08999 * 109.46906 * 60.00013 * 4 2 1 36 36 H 1.09000 * 109.46634 * 179.97438 * 4 2 1 37 37 H 0.97004 * 120.00312 * 359.97438 * 8 6 5 38 38 H 1.08995 * 109.52367 * 325.12797 * 9 8 6 39 39 H 1.08997 * 109.50017 * 62.43689 * 10 9 8 40 40 H 1.09002 * 109.50229 * 302.32151 * 10 9 8 41 41 H 1.09012 * 109.46123 * 299.16194 * 11 10 9 42 42 H 1.09002 * 109.45519 * 179.19183 * 11 10 9 43 43 H 1.09006 * 109.47265 * 173.61116 * 13 12 11 44 44 H 1.08999 * 109.46905 * 53.61730 * 13 12 11 45 45 H 0.97001 * 120.00195 * 0.27492 * 16 14 13 46 46 H 1.09000 * 109.47329 * 300.00167 * 17 16 14 47 47 H 1.09005 * 109.47293 * 60.00199 * 17 16 14 48 48 H 0.96998 * 120.00087 * 180.02562 * 21 20 18 49 49 H 1.08996 * 109.45875 * 181.75103 * 26 12 11 50 50 H 1.08992 * 109.46460 * 301.72429 * 26 12 11 51 51 H 1.08994 * 109.50626 * 180.88030 * 27 26 12 52 52 H 1.08996 * 109.50629 * 60.75326 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9724 1.3383 7 8 0.9509 -2.5095 0.5039 8 7 2.0674 -2.6654 2.4171 9 6 1.6733 -4.0666 2.5835 10 6 1.7058 -4.4342 4.0696 11 6 1.3512 -5.9140 4.2320 12 7 2.3135 -6.7342 3.4853 13 6 2.0876 -8.1648 3.7301 14 6 2.3975 -8.4831 5.1701 15 8 2.8775 -7.6327 5.8895 16 7 2.1363 -9.7112 5.6601 17 6 2.4321 -10.0189 7.0615 18 6 2.0493 -11.4468 7.3540 19 1 1.6282 -12.0636 6.5739 20 6 2.2366 -11.9658 8.6176 21 7 2.7499 -11.2149 9.5675 22 14 1.7628 -13.7360 8.9799 23 1 1.2119 -14.3624 7.7513 24 1 2.9632 -14.4887 9.4243 25 1 0.7359 -13.7639 10.0522 26 6 2.2667 -6.4322 2.0489 27 6 2.6488 -4.9678 1.8214 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 2.6270 -2.2365 3.0833 38 1 0.6652 -4.2101 2.1948 39 1 0.9822 -3.8249 4.6111 40 1 2.7045 -4.2536 4.4674 41 1 0.3470 -6.0912 3.8466 42 1 1.3875 -6.1823 5.2878 43 1 2.7369 -8.7517 3.0804 44 1 1.0464 -8.4093 3.5199 45 1 1.7524 -10.3914 5.0848 46 1 3.4976 -9.8828 7.2463 47 1 1.8630 -9.3508 7.7081 48 1 2.8820 -11.5801 10.4563 49 1 2.9679 -7.0769 1.5193 50 1 1.2584 -6.6069 1.6738 51 1 2.5988 -4.7398 0.7568 52 1 3.6622 -4.7956 2.1839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052909618.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:06 Heat of formation + Delta-G solvation = -124.142029 kcal Electronic energy + Delta-G solvation = -30027.253238 eV Core-core repulsion = 25833.481866 eV Total energy + Delta-G solvation = -4193.771372 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.07702 -39.67137 -38.43604 -37.20633 -35.18126 -34.33720 -34.08494 -32.35169 -31.67671 -30.96232 -28.14265 -27.77258 -27.71925 -26.29344 -23.94430 -23.29961 -22.44716 -21.77687 -20.55025 -19.87818 -19.62304 -18.32720 -17.10652 -17.02219 -16.38669 -16.25827 -15.70237 -15.50280 -15.32186 -14.96062 -14.77525 -14.67911 -14.34232 -14.13673 -13.97122 -13.73182 -13.52374 -13.29056 -12.84571 -12.65807 -12.58311 -12.39756 -12.25257 -12.24820 -12.08795 -11.93601 -11.82665 -11.71058 -11.49290 -11.37619 -11.30740 -11.01455 -10.93764 -10.91252 -10.66681 -10.58005 -10.31775 -10.27348 -9.38298 -9.35584 -9.01339 -8.73818 -8.23598 -7.85294 -6.17352 -4.24150 1.91474 2.61709 3.22877 3.30035 3.32913 3.39562 3.63694 3.85372 4.24254 4.35712 4.40060 4.41280 4.54055 4.55310 4.67725 4.92376 5.07019 5.10069 5.17631 5.18583 5.18950 5.22154 5.30710 5.32571 5.37544 5.41133 5.46531 5.49249 5.50196 5.55340 5.62370 5.64126 5.75978 5.81235 5.89597 5.94128 5.98623 6.03291 6.14975 6.24656 6.29936 6.94924 7.10152 7.20855 7.32624 7.45675 7.52091 7.67742 7.96889 8.16030 8.64335 8.79220 9.13283 9.42895 10.92842 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.041404 B = 0.001596 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.102642 B =17537.758862 C =17788.285331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.366 6.366 6 C 0.650 3.350 7 O -0.570 6.570 8 N -0.705 5.705 9 C 0.161 3.839 10 C -0.120 4.120 11 C 0.058 3.942 12 N -0.519 5.519 13 C 0.036 3.964 14 C 0.498 3.502 15 O -0.538 6.538 16 N -0.716 5.716 17 C 0.251 3.749 18 C -0.543 4.543 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.903 3.097 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.060 3.940 27 C -0.126 4.126 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.406 0.594 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.030 0.970 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.057 0.943 45 H 0.389 0.611 46 H 0.027 0.973 47 H 0.026 0.974 48 H 0.265 0.735 49 H 0.080 0.920 50 H 0.035 0.965 51 H 0.071 0.929 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.139 21.535 -21.190 30.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.281 6.281 6 C 0.403 3.597 7 O -0.459 6.459 8 N -0.363 5.363 9 C 0.058 3.942 10 C -0.158 4.158 11 C -0.070 4.070 12 N -0.244 5.244 13 C -0.095 4.095 14 C 0.281 3.719 15 O -0.416 6.416 16 N -0.365 5.365 17 C 0.130 3.870 18 C -0.581 4.581 19 H 0.081 0.919 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.069 4.069 27 C -0.165 4.165 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.241 0.759 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.049 0.951 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.075 0.925 45 H 0.222 0.778 46 H 0.045 0.955 47 H 0.044 0.956 48 H 0.075 0.925 49 H 0.098 0.902 50 H 0.053 0.947 51 H 0.090 0.910 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.628 22.067 -20.743 30.400 hybrid contribution -0.941 -1.327 -0.046 1.627 sum -3.569 20.740 -20.789 29.582 Atomic orbital electron populations 1.22519 0.94002 1.05108 1.02445 1.22057 0.94352 0.91493 0.82133 1.21865 1.02282 0.92568 1.03112 1.22514 1.01561 1.03548 0.96428 1.86307 1.71576 1.23795 1.46458 1.18124 0.78789 0.80375 0.82391 1.90894 1.41259 1.70532 1.43205 1.44910 1.55372 1.12497 1.23495 1.21119 0.99184 0.77290 0.96597 1.21847 1.03791 0.96435 0.93764 1.22137 0.92123 0.91629 1.01153 1.61557 1.51713 1.03628 1.07532 1.22003 1.01026 0.89967 0.96542 1.20304 0.79565 0.83191 0.88798 1.90643 1.44063 1.46986 1.59890 1.46469 1.62967 1.11919 1.15130 1.19083 0.96847 0.95747 0.75305 1.21275 1.43653 0.96577 0.96627 0.91872 1.24952 0.94816 0.98352 0.95903 1.69984 1.43216 1.36264 1.02803 0.86368 0.78234 0.83952 0.78391 1.19650 1.20797 1.20825 1.22052 1.00162 0.96279 0.88404 1.21987 1.00259 0.93786 1.00431 0.92198 0.91184 0.89339 0.91452 0.90165 0.91461 0.89326 0.91199 0.92176 0.75898 0.89391 0.90771 0.89852 0.95149 0.88110 0.88187 0.92485 0.77840 0.95542 0.95625 0.92516 0.90208 0.94663 0.90988 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 8.37 37.16 0.31 -1.17 16 2 C 0.14 1.12 1.13 -90.61 -0.10 1.01 16 3 C -0.14 -0.80 8.85 37.16 0.33 -0.47 16 4 C -0.18 -1.47 8.37 37.16 0.31 -1.16 16 5 O -0.37 -3.68 9.94 -40.32 -0.40 -4.08 16 6 C 0.65 7.18 8.03 54.05 0.43 7.62 16 7 O -0.57 -7.40 11.54 -19.28 -0.22 -7.62 16 8 N -0.70 -6.64 5.09 -58.60 -0.30 -6.94 16 9 C 0.16 1.62 2.52 -67.80 -0.17 1.45 16 10 C -0.12 -1.27 5.57 -26.65 -0.15 -1.42 16 11 C 0.06 0.75 5.12 -3.84 -0.02 0.73 16 12 N -0.52 -6.93 4.35 -236.12 -1.03 -7.96 16 13 C 0.04 0.49 5.45 -4.98 -0.03 0.47 16 14 C 0.50 9.55 7.36 -10.99 -0.08 9.46 16 15 O -0.54 -12.44 14.71 5.55 0.08 -12.36 16 16 N -0.72 -14.64 5.55 -61.47 -0.34 -14.98 16 17 C 0.25 6.56 5.43 -5.19 -0.03 6.53 16 18 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 19 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 22 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.06 0.63 5.46 -3.83 -0.02 0.61 16 27 C -0.13 -1.28 5.68 -26.65 -0.15 -1.43 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.92 5.88 -51.93 -0.31 0.61 16 31 H 0.07 0.37 8.14 -51.94 -0.42 -0.05 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.91 5.88 -51.93 -0.31 0.61 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.41 3.12 8.72 -40.82 -0.36 2.77 16 38 H 0.09 0.99 7.57 -51.93 -0.39 0.59 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.03 0.36 8.14 -51.92 -0.42 -0.06 16 42 H 0.10 1.63 6.06 -51.93 -0.31 1.31 16 43 H 0.10 1.18 7.98 -51.93 -0.41 0.77 16 44 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 45 H 0.39 6.79 8.32 -40.82 -0.34 6.45 16 46 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 49 H 0.08 0.77 8.01 -51.93 -0.42 0.36 16 50 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 51 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 52 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 411.95 15.07 6.21 6.21 Total: -1.00 -32.95 411.95 -9.21 -42.16 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -9.14 Total: 6.09 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 0.22 Total: 8.98 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.93 Total: -55.06 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.54 Total: -24.06 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.95 -9.21 -42.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052909618.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.982 kcal (2) G-P(sol) polarization free energy of solvation -32.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds