Wall clock time and date at job start Wed Apr 1 2020 00:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46967 * 2 1 4 4 C 1.53002 * 109.46930 * 240.00063 * 2 1 3 5 5 O 1.45200 * 109.47224 * 120.00182 * 2 1 3 6 6 C 1.34637 * 117.00029 * 60.00054 * 5 2 1 7 7 O 1.21514 * 120.00121 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99714 * 180.02562 * 6 5 2 9 9 C 1.46503 * 119.99700 * 179.97438 * 8 6 5 10 10 C 1.53124 * 109.52233 * 204.99865 * 9 8 6 11 11 C 1.53031 * 109.27814 * 182.38157 * 10 9 8 12 12 N 1.46847 * 109.52813 * 59.17740 * 11 10 9 13 13 C 1.46894 * 111.00173 * 174.15929 * 12 11 10 14 14 C 1.50697 * 109.47436 * 293.61382 * 13 12 11 15 15 O 1.21284 * 120.00073 * 353.73180 * 14 13 12 16 16 N 1.34778 * 119.99898 * 173.45699 * 14 13 12 17 17 C 1.46497 * 119.99797 * 180.27352 * 16 14 13 18 18 C 1.50705 * 109.47367 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99638 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00160 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00231 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99960 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46900 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47326 * 119.99823 * 22 20 18 25 25 H 1.48496 * 109.46897 * 240.00129 * 22 20 18 26 26 C 1.46847 * 111.19736 * 298.26116 * 12 11 10 27 27 C 1.53039 * 109.52415 * 61.74168 * 26 12 11 28 28 H 1.08997 * 109.47159 * 299.99772 * 1 2 3 29 29 H 1.08996 * 109.47215 * 60.00203 * 1 2 3 30 30 H 1.09004 * 109.46521 * 180.02562 * 1 2 3 31 31 H 1.08989 * 109.46723 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46725 * 300.00070 * 3 2 1 33 33 H 1.08997 * 109.46995 * 60.00128 * 3 2 1 34 34 H 1.08998 * 109.47273 * 300.00034 * 4 2 1 35 35 H 1.08999 * 109.46906 * 60.00013 * 4 2 1 36 36 H 1.09000 * 109.46634 * 179.97438 * 4 2 1 37 37 H 0.97004 * 120.00312 * 359.97438 * 8 6 5 38 38 H 1.08995 * 109.52367 * 325.12797 * 9 8 6 39 39 H 1.08997 * 109.50017 * 62.43689 * 10 9 8 40 40 H 1.09002 * 109.50229 * 302.32151 * 10 9 8 41 41 H 1.09012 * 109.46123 * 299.16194 * 11 10 9 42 42 H 1.09002 * 109.45519 * 179.19183 * 11 10 9 43 43 H 1.09006 * 109.47265 * 173.61116 * 13 12 11 44 44 H 1.08999 * 109.46905 * 53.61730 * 13 12 11 45 45 H 0.97001 * 120.00195 * 0.27492 * 16 14 13 46 46 H 1.09000 * 109.47329 * 300.00167 * 17 16 14 47 47 H 1.09005 * 109.47293 * 60.00199 * 17 16 14 48 48 H 0.96998 * 120.00087 * 180.02562 * 21 20 18 49 49 H 1.08996 * 109.45875 * 181.75103 * 26 12 11 50 50 H 1.08992 * 109.46460 * 301.72429 * 26 12 11 51 51 H 1.08994 * 109.50626 * 180.88030 * 27 26 12 52 52 H 1.08996 * 109.50629 * 60.75326 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9724 1.3383 7 8 0.9509 -2.5095 0.5039 8 7 2.0674 -2.6654 2.4171 9 6 1.6733 -4.0666 2.5835 10 6 1.7058 -4.4342 4.0696 11 6 1.3512 -5.9140 4.2320 12 7 2.3135 -6.7342 3.4853 13 6 2.0876 -8.1648 3.7301 14 6 2.3975 -8.4831 5.1701 15 8 2.8775 -7.6327 5.8895 16 7 2.1363 -9.7112 5.6601 17 6 2.4321 -10.0189 7.0615 18 6 2.0493 -11.4468 7.3540 19 1 1.6282 -12.0636 6.5739 20 6 2.2366 -11.9658 8.6176 21 7 2.7499 -11.2149 9.5675 22 14 1.7628 -13.7360 8.9799 23 1 1.2119 -14.3624 7.7513 24 1 2.9632 -14.4887 9.4243 25 1 0.7359 -13.7639 10.0522 26 6 2.2667 -6.4322 2.0489 27 6 2.6488 -4.9678 1.8214 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 2.6270 -2.2365 3.0833 38 1 0.6652 -4.2101 2.1948 39 1 0.9822 -3.8249 4.6111 40 1 2.7045 -4.2536 4.4674 41 1 0.3470 -6.0912 3.8466 42 1 1.3875 -6.1823 5.2878 43 1 2.7369 -8.7517 3.0804 44 1 1.0464 -8.4093 3.5199 45 1 1.7524 -10.3914 5.0848 46 1 3.4976 -9.8828 7.2463 47 1 1.8630 -9.3508 7.7081 48 1 2.8820 -11.5801 10.4563 49 1 2.9679 -7.0769 1.5193 50 1 1.2584 -6.6069 1.6738 51 1 2.5988 -4.7398 0.7568 52 1 3.6622 -4.7956 2.1839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052909618.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:05 Heat of formation + Delta-G solvation = -149.259044 kcal Electronic energy + Delta-G solvation = -30028.342393 eV Core-core repulsion = 25833.481866 eV Total energy + Delta-G solvation = -4194.860527 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.87661 -40.88048 -39.66241 -38.11279 -36.23364 -35.91280 -34.99974 -34.31368 -32.65950 -31.86790 -29.83597 -28.34048 -28.27830 -27.76629 -25.14472 -24.25243 -24.03202 -22.72736 -21.37011 -21.28862 -20.68112 -19.11917 -18.89590 -17.82966 -17.50042 -17.31157 -17.12444 -16.75945 -16.55808 -16.27708 -15.81934 -15.61941 -15.48483 -15.29865 -15.08021 -14.65825 -14.47101 -14.27729 -14.18975 -14.01502 -13.84148 -13.32120 -13.21025 -13.07553 -12.91555 -12.87393 -12.84347 -12.81572 -12.67497 -12.57611 -12.47290 -12.22038 -12.21123 -12.18845 -11.84551 -11.57685 -11.43746 -11.36245 -11.08238 -10.79695 -10.60806 -10.17956 -9.76091 -9.24984 -8.28056 -6.44278 1.16863 1.44037 1.44836 1.58275 1.77408 1.85374 2.28987 2.47740 3.05602 3.07045 3.14073 3.66368 3.77359 3.80246 3.83595 3.96375 3.97025 4.06649 4.21671 4.30202 4.36186 4.43870 4.49595 4.52783 4.60790 4.63709 4.70351 4.76743 4.78711 4.86623 4.88589 4.89876 4.95820 4.99714 5.10341 5.12780 5.14628 5.23602 5.27738 5.30245 5.33091 5.42464 5.51992 5.59832 5.73000 5.87359 5.96706 6.14847 6.42319 6.67763 7.00056 7.25647 7.35586 7.58187 8.84224 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.041404 B = 0.001596 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.102642 B =17537.758862 C =17788.285331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.125 3.875 3 C -0.137 4.137 4 C -0.179 4.179 5 O -0.371 6.371 6 C 0.647 3.353 7 O -0.591 6.591 8 N -0.698 5.698 9 C 0.170 3.830 10 C -0.111 4.111 11 C 0.059 3.941 12 N -0.538 5.538 13 C 0.049 3.951 14 C 0.494 3.506 15 O -0.583 6.583 16 N -0.711 5.711 17 C 0.268 3.732 18 C -0.555 4.555 19 H 0.084 0.916 20 C 0.003 3.997 21 N -0.931 5.931 22 Si 0.984 3.016 23 H -0.253 1.253 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.063 3.937 27 C -0.119 4.119 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.415 0.585 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.043 0.957 42 H 0.063 0.937 43 H 0.129 0.871 44 H 0.085 0.915 45 H 0.407 0.593 46 H -0.014 1.014 47 H -0.014 1.014 48 H 0.268 0.732 49 H 0.094 0.906 50 H 0.047 0.953 51 H 0.072 0.928 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.930 21.226 -23.572 31.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.088 3.912 3 C -0.194 4.194 4 C -0.236 4.236 5 O -0.286 6.286 6 C 0.401 3.599 7 O -0.481 6.481 8 N -0.357 5.357 9 C 0.067 3.933 10 C -0.149 4.149 11 C -0.070 4.070 12 N -0.264 5.264 13 C -0.081 4.081 14 C 0.281 3.719 15 O -0.463 6.463 16 N -0.362 5.362 17 C 0.145 3.855 18 C -0.593 4.593 19 H 0.102 0.898 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.807 3.193 23 H -0.176 1.176 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.065 4.065 27 C -0.158 4.158 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.251 0.749 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.147 0.853 44 H 0.103 0.897 45 H 0.243 0.757 46 H 0.004 0.996 47 H 0.004 0.996 48 H 0.077 0.923 49 H 0.113 0.887 50 H 0.065 0.935 51 H 0.091 0.909 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.426 21.770 -23.177 31.982 hybrid contribution -0.677 -1.119 0.674 1.472 sum -4.103 20.650 -22.503 30.816 Atomic orbital electron populations 1.22473 0.94019 1.03681 1.03502 1.22402 0.94541 0.92666 0.81546 1.21889 1.02416 0.90786 1.04271 1.22466 1.01583 1.02281 0.97301 1.86320 1.71592 1.23201 1.47450 1.18249 0.78595 0.80718 0.82361 1.90888 1.42204 1.71050 1.44007 1.44828 1.55168 1.12261 1.23400 1.20951 0.98836 0.77650 0.95877 1.21733 1.03574 0.95232 0.94368 1.22036 0.92955 0.92892 0.99073 1.61505 1.52225 1.03325 1.09314 1.21933 1.03221 0.90840 0.92141 1.21357 0.77825 0.81796 0.90962 1.90626 1.45762 1.48138 1.61750 1.46202 1.63516 1.13331 1.13171 1.18491 0.93631 0.95297 0.78051 1.21674 1.43416 0.96780 0.97404 0.89816 1.26052 0.94447 1.03448 0.95657 1.70144 1.44573 1.38808 1.03446 0.85124 0.77815 0.77613 0.78734 1.17623 1.20536 1.20549 1.22097 1.01281 0.96574 0.86506 1.21918 0.99873 0.93726 1.00307 0.92111 0.89164 0.91900 0.91258 0.88009 0.91300 0.91823 0.89198 0.92037 0.74893 0.90139 0.89764 0.90670 0.93863 0.91814 0.85344 0.89704 0.75718 0.99626 0.99565 0.92321 0.88732 0.93507 0.90914 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.71 8.37 71.98 0.60 -2.11 16 2 C 0.12 1.89 1.13 -10.79 -0.01 1.88 16 3 C -0.14 -1.27 8.85 71.98 0.64 -0.63 16 4 C -0.18 -2.67 8.37 71.98 0.60 -2.07 16 5 O -0.37 -7.19 9.94 -55.47 -0.55 -7.74 16 6 C 0.65 14.04 8.03 129.79 1.04 15.08 16 7 O -0.59 -15.27 11.54 19.80 0.23 -15.04 16 8 N -0.70 -12.75 5.09 -569.73 -2.90 -15.65 16 9 C 0.17 3.29 2.52 45.07 0.11 3.40 16 10 C -0.11 -2.32 5.57 30.65 0.17 -2.15 16 11 C 0.06 1.51 5.12 86.32 0.44 1.96 16 12 N -0.54 -13.66 4.35 -900.95 -3.92 -17.58 16 13 C 0.05 1.26 5.45 85.56 0.47 1.72 16 14 C 0.49 19.08 7.36 87.66 0.65 19.73 16 15 O -0.58 -28.09 14.71 -3.04 -0.04 -28.14 16 16 N -0.71 -29.30 5.55 -466.78 -2.59 -31.89 16 17 C 0.27 14.62 5.43 85.64 0.46 15.09 16 18 C -0.55 -29.99 9.28 25.60 0.24 -29.75 16 19 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 20 C 0.00 0.19 5.46 84.65 0.46 0.65 16 21 N -0.93 -56.08 13.29 21.45 0.28 -55.80 16 22 Si 0.98 42.14 29.54 68.60 2.03 44.17 16 23 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 26 C 0.06 1.19 5.46 86.33 0.47 1.66 16 27 C -0.12 -2.26 5.68 30.65 0.17 -2.09 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.30 5.88 -2.39 -0.01 1.29 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 1.30 5.88 -2.39 -0.01 1.28 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 37 H 0.41 6.13 8.72 -92.71 -0.81 5.32 16 38 H 0.08 1.73 7.57 -2.39 -0.02 1.71 16 39 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 41 H 0.04 0.98 8.14 -2.38 -0.02 0.97 16 42 H 0.06 2.14 6.06 -2.39 -0.01 2.12 16 43 H 0.13 2.60 7.98 -2.38 -0.02 2.58 16 44 H 0.09 1.75 8.12 -2.39 -0.02 1.73 16 45 H 0.41 13.68 8.32 -92.71 -0.77 12.91 16 46 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 47 H -0.01 -0.84 8.14 -2.38 -0.02 -0.85 16 48 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 49 H 0.09 1.53 8.01 -2.39 -0.02 1.51 16 50 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 51 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 52 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -75.04 411.95 -1.60 -76.64 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: -0.66 Total: 28.67 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: 6.52 Total: 22.37 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -9.12 Total: -120.92 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: -0.37 Total: -50.92 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -75.04 -1.60 -76.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052909618.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.619 kcal (2) G-P(sol) polarization free energy of solvation -75.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds