Wall clock time and date at job start Wed Apr 1 2020 00:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47066 * 2 1 4 4 C 1.53004 * 109.46963 * 240.00480 * 2 1 3 5 5 O 1.45192 * 109.47287 * 120.00234 * 2 1 3 6 6 C 1.34635 * 117.00124 * 60.00014 * 5 2 1 7 7 O 1.21511 * 120.00173 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00021 * 180.02562 * 6 5 2 9 9 C 1.46498 * 119.99855 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.50545 * 324.92159 * 9 8 6 11 11 C 1.53126 * 109.49928 * 84.99876 * 9 8 6 12 12 C 1.53119 * 109.15901 * 177.63398 * 11 9 8 13 13 C 1.53048 * 109.27960 * 302.34826 * 12 11 9 14 14 N 1.46842 * 109.52034 * 59.17683 * 13 12 11 15 15 C 1.46910 * 110.99593 * 174.16151 * 14 13 12 16 16 C 1.50700 * 109.46812 * 66.05033 * 15 14 13 17 17 O 1.21286 * 120.00120 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00000 * 179.97438 * 16 15 14 19 19 C 1.46491 * 120.00091 * 179.97438 * 18 16 15 20 20 C 1.50702 * 109.46957 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48504 * 109.47196 * 60.00645 * 24 22 20 26 26 H 1.48504 * 109.46887 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47679 * 300.00280 * 24 22 20 28 28 C 1.46848 * 111.20096 * 298.25932 * 14 13 12 29 29 H 1.08996 * 109.46909 * 300.00337 * 1 2 3 30 30 H 1.09004 * 109.46817 * 59.99440 * 1 2 3 31 31 H 1.08992 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47189 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47078 * 300.00075 * 3 2 1 34 34 H 1.08996 * 109.47531 * 60.00044 * 3 2 1 35 35 H 1.09000 * 109.46963 * 299.99594 * 4 2 1 36 36 H 1.08999 * 109.47555 * 59.99696 * 4 2 1 37 37 H 1.09002 * 109.46829 * 179.97438 * 4 2 1 38 38 H 0.96995 * 120.00048 * 359.97438 * 8 6 5 39 39 H 1.09001 * 109.52204 * 57.73012 * 11 9 8 40 40 H 1.08992 * 109.52643 * 297.53839 * 11 9 8 41 41 H 1.08992 * 109.50615 * 182.40879 * 12 11 9 42 42 H 1.09004 * 109.50564 * 62.28627 * 12 11 9 43 43 H 1.09003 * 109.45688 * 299.16129 * 13 12 11 44 44 H 1.08995 * 109.46283 * 179.19893 * 13 12 11 45 45 H 1.08998 * 109.47017 * 306.05096 * 15 14 13 46 46 H 1.09002 * 109.46670 * 186.04506 * 15 14 13 47 47 H 0.97003 * 119.99349 * 359.97438 * 18 16 15 48 48 H 1.09004 * 109.47166 * 60.00164 * 19 18 16 49 49 H 1.08994 * 109.47507 * 299.99870 * 19 18 16 50 50 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 51 51 H 1.08999 * 109.45931 * 181.76104 * 28 14 13 52 52 H 1.09000 * 109.46186 * 301.72864 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1854 6 6 1.6523 -1.9723 1.3382 7 8 0.9509 -2.5095 0.5039 8 7 2.0673 -2.6655 2.4170 9 6 1.6733 -4.0666 2.5835 10 1 0.6637 -4.2090 2.1980 11 6 2.6456 -4.9658 1.8148 12 6 2.2620 -6.4306 2.0421 13 6 2.2816 -6.7311 3.5427 14 7 1.3349 -5.8458 4.2328 15 6 1.2248 -6.1988 5.6546 16 6 2.5374 -5.9263 6.3429 17 8 3.4728 -5.4823 5.7112 18 7 2.6721 -6.1761 7.6605 19 6 3.9482 -5.9118 8.3295 20 6 3.8349 -6.2726 9.7882 21 1 2.9053 -6.6604 10.1780 22 6 4.9198 -6.1135 10.6241 23 7 6.0519 -5.6416 10.1495 24 14 4.7816 -6.5679 12.4307 25 1 4.4419 -8.0083 12.5542 26 1 6.0767 -6.3045 13.1078 27 1 3.7162 -5.7518 13.0664 28 6 1.7100 -4.4356 4.0682 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 -1.7488 -1.2494 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7208 -1.2496 38 1 2.6269 -2.2366 3.0832 39 1 3.6606 -4.7952 2.1736 40 1 2.5908 -4.7358 0.7509 41 1 2.9760 -7.0771 1.5322 42 1 1.2616 -6.6102 1.6481 43 1 3.2855 -6.5646 3.9333 44 1 1.9950 -7.7695 3.7089 45 1 0.9780 -7.2563 5.7483 46 1 0.4405 -5.6000 6.1179 47 1 1.9239 -6.5308 8.1657 48 1 4.1957 -4.8544 8.2353 49 1 4.7322 -6.5111 7.8665 50 1 6.8151 -5.5293 10.7376 51 1 1.0082 -3.8068 4.6162 52 1 2.7166 -4.2798 4.4564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056316475.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:37 Heat of formation + Delta-G solvation = -122.540963 kcal Electronic energy + Delta-G solvation = -30737.999297 eV Core-core repulsion = 26544.297353 eV Total energy + Delta-G solvation = -4193.701945 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.95309 -39.99117 -38.26847 -36.98526 -34.89645 -34.31138 -34.03523 -32.68400 -32.37239 -29.64944 -28.31120 -27.66087 -27.61153 -26.39608 -23.79347 -23.39728 -22.34577 -21.64602 -20.36082 -19.94521 -19.66822 -18.26158 -17.21212 -16.87261 -16.22832 -16.10540 -15.82451 -15.26327 -15.20937 -14.98493 -14.71536 -14.57746 -14.50778 -14.16062 -13.84552 -13.64652 -13.52371 -13.19138 -12.74822 -12.62541 -12.48047 -12.33275 -12.13979 -12.13406 -12.11909 -11.96611 -11.73005 -11.54490 -11.52472 -11.12906 -11.04498 -10.93192 -10.83346 -10.67467 -10.54520 -10.46739 -10.38143 -10.13247 -9.83938 -9.47701 -9.19374 -8.78952 -7.98359 -7.89236 -6.22462 -4.29904 2.03937 2.76411 3.18803 3.21300 3.26386 3.27599 3.80977 4.03124 4.18454 4.32515 4.47173 4.51542 4.65651 4.77047 4.87038 5.02966 5.12176 5.13883 5.20592 5.28134 5.31323 5.42199 5.43141 5.43193 5.49093 5.54629 5.56230 5.60043 5.61170 5.68769 5.73111 5.91991 5.94533 5.99645 6.05010 6.08435 6.14899 6.20202 6.29265 6.42030 6.45386 6.95171 7.07398 7.21981 7.33898 7.37582 7.43050 7.58843 7.90328 8.31215 8.51776 8.69271 8.98220 9.36884 10.87504 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016256 B = 0.002083 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.983709 B =13439.003533 C =14477.360690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.366 6.366 6 C 0.652 3.348 7 O -0.570 6.570 8 N -0.704 5.704 9 C 0.171 3.829 10 H 0.095 0.905 11 C -0.131 4.131 12 C -0.108 4.108 13 C 0.036 3.964 14 N -0.509 5.509 15 C 0.033 3.967 16 C 0.465 3.535 17 O -0.555 6.555 18 N -0.709 5.709 19 C 0.250 3.750 20 C -0.546 4.546 21 H 0.063 0.937 22 C 0.064 3.936 23 N -0.885 5.885 24 Si 0.904 3.096 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 C 0.025 3.975 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.406 0.594 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.103 0.897 46 H 0.101 0.899 47 H 0.391 0.609 48 H 0.026 0.974 49 H 0.026 0.974 50 H 0.267 0.733 51 H 0.072 0.928 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.084 7.342 -19.607 23.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.281 6.281 6 C 0.405 3.595 7 O -0.459 6.459 8 N -0.362 5.362 9 C 0.067 3.933 10 H 0.113 0.887 11 C -0.170 4.170 12 C -0.147 4.147 13 C -0.091 4.091 14 N -0.232 5.232 15 C -0.099 4.099 16 C 0.250 3.750 17 O -0.436 6.436 18 N -0.357 5.357 19 C 0.129 3.871 20 C -0.584 4.584 21 H 0.081 0.919 22 C -0.140 4.140 23 N -0.523 5.523 24 Si 0.731 3.269 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.200 1.200 28 C -0.103 4.103 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.241 0.759 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.224 0.776 48 H 0.044 0.956 49 H 0.044 0.956 50 H 0.076 0.924 51 H 0.091 0.909 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.025 7.449 -20.665 24.578 hybrid contribution 0.725 -0.052 1.993 2.121 sum -10.300 7.396 -18.673 22.571 Atomic orbital electron populations 1.22515 0.94020 1.05118 1.02381 1.22044 0.94349 0.91493 0.82176 1.21862 1.02304 0.92600 1.03064 1.22514 1.01559 1.03551 0.96407 1.86314 1.71590 1.23812 1.46374 1.18042 0.78743 0.80321 0.82346 1.90883 1.41305 1.70514 1.43214 1.44805 1.55231 1.12616 1.23572 1.20885 0.99555 0.76973 0.95884 0.88736 1.21988 0.99524 0.95067 1.00428 1.21478 1.01984 0.95468 0.95725 1.22343 0.96794 0.96165 0.93820 1.62291 1.48542 1.02909 1.09428 1.22296 0.95628 1.03621 0.88370 1.21797 0.90719 0.79137 0.83393 1.90541 1.41942 1.46556 1.64609 1.46628 1.17332 1.63151 1.08542 1.19085 0.79788 0.96915 0.91341 1.21191 0.98552 1.45437 0.93213 0.91934 1.24961 0.94971 0.94746 0.99345 1.69961 1.02171 1.43944 1.36189 0.86466 0.77482 0.79014 0.83904 1.20036 1.21050 1.20030 1.22599 1.03752 0.89613 0.94356 0.92193 0.91259 0.89298 0.91455 0.90221 0.91445 0.89313 0.91262 0.92204 0.75879 0.91510 0.91550 0.91254 0.91261 0.91449 0.91062 0.87931 0.88048 0.77605 0.95642 0.95635 0.92356 0.90930 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 8.37 37.16 0.31 -1.38 16 2 C 0.14 1.31 1.13 -90.62 -0.10 1.21 16 3 C -0.14 -1.00 8.85 37.16 0.33 -0.67 16 4 C -0.18 -1.70 8.37 37.16 0.31 -1.39 16 5 O -0.37 -4.36 9.94 -40.31 -0.40 -4.76 16 6 C 0.65 8.46 8.02 54.06 0.43 8.90 16 7 O -0.57 -8.29 11.55 -19.28 -0.22 -8.51 16 8 N -0.70 -8.43 5.09 -58.65 -0.30 -8.72 16 9 C 0.17 2.12 2.61 -67.85 -0.18 1.94 16 10 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 11 C -0.13 -1.61 5.58 -26.60 -0.15 -1.76 16 12 C -0.11 -1.23 6.09 -26.65 -0.16 -1.40 16 13 C 0.04 0.48 5.09 -3.83 -0.02 0.46 16 14 N -0.51 -6.65 4.86 -236.11 -1.15 -7.79 16 15 C 0.03 0.42 5.86 -4.97 -0.03 0.39 16 16 C 0.47 8.32 7.25 -10.98 -0.08 8.24 16 17 O -0.56 -11.71 11.62 5.55 0.06 -11.65 16 18 N -0.71 -13.89 5.55 -61.48 -0.34 -14.23 16 19 C 0.25 6.36 5.43 -5.20 -0.03 6.34 16 20 C -0.55 -14.42 9.28 -34.44 -0.32 -14.74 16 21 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 24 Si 0.90 20.50 29.54 -169.99 -5.02 15.47 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 C 0.03 0.33 4.45 -3.84 -0.02 0.32 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 1.03 5.88 -51.93 -0.31 0.72 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 1.03 5.88 -51.93 -0.31 0.72 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.41 4.44 8.71 -40.82 -0.36 4.08 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.09 6.00 -51.93 -0.31 0.78 16 44 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 45 H 0.10 1.13 8.06 -51.93 -0.42 0.71 16 46 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.39 6.54 8.32 -40.82 -0.34 6.20 16 48 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16 51 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 52 H 0.09 1.44 5.36 -51.93 -0.28 1.16 16 LS Contribution 406.46 15.07 6.13 6.13 Total: -1.00 -31.49 406.46 -9.30 -40.79 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -9.00 Total: 10.10 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 0.20 Total: 8.09 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -1.05 Total: -55.66 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.56 Total: -24.91 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.49 -9.30 -40.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056316475.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.752 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds