Wall clock time and date at job start Wed Apr 1 2020 00:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47066 * 2 1 4 4 C 1.53004 * 109.46963 * 240.00480 * 2 1 3 5 5 O 1.45192 * 109.47287 * 120.00234 * 2 1 3 6 6 C 1.34635 * 117.00124 * 60.00014 * 5 2 1 7 7 O 1.21511 * 120.00173 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00021 * 180.02562 * 6 5 2 9 9 C 1.46498 * 119.99855 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.50545 * 324.92159 * 9 8 6 11 11 C 1.53126 * 109.49928 * 84.99876 * 9 8 6 12 12 C 1.53119 * 109.15901 * 177.63398 * 11 9 8 13 13 C 1.53048 * 109.27960 * 302.34826 * 12 11 9 14 14 N 1.46842 * 109.52034 * 59.17683 * 13 12 11 15 15 C 1.46910 * 110.99593 * 174.16151 * 14 13 12 16 16 C 1.50700 * 109.46812 * 66.05033 * 15 14 13 17 17 O 1.21286 * 120.00120 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00000 * 179.97438 * 16 15 14 19 19 C 1.46491 * 120.00091 * 179.97438 * 18 16 15 20 20 C 1.50702 * 109.46957 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48504 * 109.47196 * 60.00645 * 24 22 20 26 26 H 1.48504 * 109.46887 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47679 * 300.00280 * 24 22 20 28 28 C 1.46848 * 111.20096 * 298.25932 * 14 13 12 29 29 H 1.08996 * 109.46909 * 300.00337 * 1 2 3 30 30 H 1.09004 * 109.46817 * 59.99440 * 1 2 3 31 31 H 1.08992 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47189 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47078 * 300.00075 * 3 2 1 34 34 H 1.08996 * 109.47531 * 60.00044 * 3 2 1 35 35 H 1.09000 * 109.46963 * 299.99594 * 4 2 1 36 36 H 1.08999 * 109.47555 * 59.99696 * 4 2 1 37 37 H 1.09002 * 109.46829 * 179.97438 * 4 2 1 38 38 H 0.96995 * 120.00048 * 359.97438 * 8 6 5 39 39 H 1.09001 * 109.52204 * 57.73012 * 11 9 8 40 40 H 1.08992 * 109.52643 * 297.53839 * 11 9 8 41 41 H 1.08992 * 109.50615 * 182.40879 * 12 11 9 42 42 H 1.09004 * 109.50564 * 62.28627 * 12 11 9 43 43 H 1.09003 * 109.45688 * 299.16129 * 13 12 11 44 44 H 1.08995 * 109.46283 * 179.19893 * 13 12 11 45 45 H 1.08998 * 109.47017 * 306.05096 * 15 14 13 46 46 H 1.09002 * 109.46670 * 186.04506 * 15 14 13 47 47 H 0.97003 * 119.99349 * 359.97438 * 18 16 15 48 48 H 1.09004 * 109.47166 * 60.00164 * 19 18 16 49 49 H 1.08994 * 109.47507 * 299.99870 * 19 18 16 50 50 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 51 51 H 1.08999 * 109.45931 * 181.76104 * 28 14 13 52 52 H 1.09000 * 109.46186 * 301.72864 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1854 6 6 1.6523 -1.9723 1.3382 7 8 0.9509 -2.5095 0.5039 8 7 2.0673 -2.6655 2.4170 9 6 1.6733 -4.0666 2.5835 10 1 0.6637 -4.2090 2.1980 11 6 2.6456 -4.9658 1.8148 12 6 2.2620 -6.4306 2.0421 13 6 2.2816 -6.7311 3.5427 14 7 1.3349 -5.8458 4.2328 15 6 1.2248 -6.1988 5.6546 16 6 2.5374 -5.9263 6.3429 17 8 3.4728 -5.4823 5.7112 18 7 2.6721 -6.1761 7.6605 19 6 3.9482 -5.9118 8.3295 20 6 3.8349 -6.2726 9.7882 21 1 2.9053 -6.6604 10.1780 22 6 4.9198 -6.1135 10.6241 23 7 6.0519 -5.6416 10.1495 24 14 4.7816 -6.5679 12.4307 25 1 4.4419 -8.0083 12.5542 26 1 6.0767 -6.3045 13.1078 27 1 3.7162 -5.7518 13.0664 28 6 1.7100 -4.4356 4.0682 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 -1.7488 -1.2494 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7208 -1.2496 38 1 2.6269 -2.2366 3.0832 39 1 3.6606 -4.7952 2.1736 40 1 2.5908 -4.7358 0.7509 41 1 2.9760 -7.0771 1.5322 42 1 1.2616 -6.6102 1.6481 43 1 3.2855 -6.5646 3.9333 44 1 1.9950 -7.7695 3.7089 45 1 0.9780 -7.2563 5.7483 46 1 0.4405 -5.6000 6.1179 47 1 1.9239 -6.5308 8.1657 48 1 4.1957 -4.8544 8.2353 49 1 4.7322 -6.5111 7.8665 50 1 6.8151 -5.5293 10.7376 51 1 1.0082 -3.8068 4.6162 52 1 2.7166 -4.2798 4.4564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056316475.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:36 Heat of formation + Delta-G solvation = -146.641608 kcal Electronic energy + Delta-G solvation = -30739.044380 eV Core-core repulsion = 26544.297353 eV Total energy + Delta-G solvation = -4194.747027 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.93330 -41.25419 -39.46538 -38.03004 -36.22540 -35.78106 -34.96027 -34.36736 -33.66898 -30.72438 -29.94227 -28.34490 -28.28712 -27.91899 -25.07338 -24.62875 -23.82550 -22.69287 -21.41184 -21.35310 -20.75507 -19.26902 -18.86742 -17.84465 -17.54071 -17.26380 -17.17108 -16.75924 -16.46455 -16.19098 -15.96713 -15.79787 -15.43075 -15.36400 -15.05557 -14.71861 -14.57816 -14.33749 -14.09433 -14.00700 -13.68151 -13.40568 -13.33225 -13.14650 -12.93000 -12.89974 -12.85552 -12.72734 -12.61229 -12.52889 -12.35986 -12.25802 -12.13074 -11.84422 -11.78921 -11.53028 -11.51098 -11.37286 -11.29839 -11.08533 -10.78971 -10.21143 -9.78072 -9.17400 -8.30042 -6.46613 1.12395 1.42427 1.45894 1.54083 1.74603 1.74763 2.32303 2.63638 2.80722 3.04693 3.21892 3.71727 3.76604 3.80258 3.82815 3.96161 4.00367 4.05197 4.13159 4.35330 4.44213 4.49735 4.56274 4.60579 4.63343 4.67373 4.73747 4.77934 4.85366 4.88870 4.89761 4.90609 5.00396 5.04775 5.10957 5.12014 5.14813 5.23587 5.24865 5.29898 5.35878 5.40892 5.50122 5.56411 5.71505 5.84108 5.89370 5.97353 6.37416 6.65084 6.91939 7.23143 7.32115 7.51054 8.81343 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016256 B = 0.002083 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.983709 B =13439.003533 C =14477.360690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.123 3.877 3 C -0.137 4.137 4 C -0.179 4.179 5 O -0.373 6.373 6 C 0.651 3.349 7 O -0.587 6.587 8 N -0.702 5.702 9 C 0.180 3.820 10 H 0.090 0.910 11 C -0.127 4.127 12 C -0.102 4.102 13 C 0.037 3.963 14 N -0.500 5.500 15 C 0.044 3.956 16 C 0.462 3.538 17 O -0.590 6.590 18 N -0.707 5.707 19 C 0.269 3.731 20 C -0.557 4.557 21 H 0.084 0.916 22 C 0.003 3.997 23 N -0.931 5.931 24 Si 0.983 3.017 25 H -0.262 1.262 26 H -0.287 1.287 27 H -0.262 1.262 28 C 0.032 3.968 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.410 0.590 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.032 0.968 44 H 0.089 0.911 45 H 0.134 0.866 46 H 0.130 0.870 47 H 0.408 0.592 48 H -0.015 1.015 49 H -0.016 1.016 50 H 0.268 0.732 51 H 0.081 0.919 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.411 7.128 -19.500 24.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.087 3.913 3 C -0.194 4.194 4 C -0.236 4.236 5 O -0.288 6.288 6 C 0.404 3.596 7 O -0.477 6.477 8 N -0.361 5.361 9 C 0.076 3.924 10 H 0.108 0.892 11 C -0.166 4.166 12 C -0.140 4.140 13 C -0.091 4.091 14 N -0.222 5.222 15 C -0.088 4.088 16 C 0.249 3.751 17 O -0.472 6.472 18 N -0.357 5.357 19 C 0.146 3.854 20 C -0.594 4.594 21 H 0.102 0.898 22 C -0.197 4.197 23 N -0.570 5.570 24 Si 0.806 3.194 25 H -0.187 1.187 26 H -0.213 1.213 27 H -0.186 1.186 28 C -0.097 4.097 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.246 0.754 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.051 0.949 44 H 0.107 0.893 45 H 0.151 0.849 46 H 0.148 0.852 47 H 0.244 0.756 48 H 0.003 0.997 49 H 0.002 0.998 50 H 0.077 0.923 51 H 0.099 0.901 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.398 7.232 -20.578 25.598 hybrid contribution 1.461 0.067 1.838 2.349 sum -11.937 7.300 -18.740 23.387 Atomic orbital electron populations 1.22463 0.93730 1.03770 1.03585 1.22445 0.94796 0.92642 0.81462 1.21892 1.02306 0.90809 1.04350 1.22466 1.01450 1.02312 0.97365 1.86328 1.71672 1.23163 1.47620 1.18132 0.78541 0.80701 0.82196 1.90876 1.42076 1.70994 1.43789 1.44798 1.55127 1.12546 1.23585 1.20752 0.99242 0.77228 0.95186 0.89152 1.21939 0.98650 0.95945 1.00073 1.21460 1.02979 0.94816 0.94740 1.22351 0.94919 0.97131 0.94659 1.62390 1.47861 1.02606 1.09354 1.22486 0.92712 1.06069 0.87490 1.22882 0.92265 0.77484 0.82482 1.90560 1.43887 1.47585 1.65197 1.46373 1.15820 1.64086 1.09421 1.18455 0.81588 0.93574 0.91824 1.21621 0.99412 1.44949 0.93453 0.89819 1.26061 0.94457 0.94421 1.04737 1.70129 1.03220 1.45434 1.38170 0.85239 0.77549 0.79322 0.77317 1.18656 1.21256 1.18646 1.22486 1.02170 0.90154 0.94869 0.92112 0.88925 0.91811 0.91488 0.87727 0.91346 0.91830 0.88904 0.92292 0.75429 0.93042 0.91780 0.90018 0.90084 0.94939 0.89267 0.84853 0.85189 0.75592 0.99700 0.99781 0.92326 0.90086 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 8.37 71.98 0.60 -2.52 16 2 C 0.12 2.25 1.13 -10.79 -0.01 2.24 16 3 C -0.14 -1.69 8.85 71.98 0.64 -1.05 16 4 C -0.18 -3.19 8.37 71.98 0.60 -2.58 16 5 O -0.37 -8.89 9.94 -55.45 -0.55 -9.44 16 6 C 0.65 17.13 8.02 129.79 1.04 18.17 16 7 O -0.59 -17.31 11.55 19.80 0.23 -17.08 16 8 N -0.70 -17.19 5.09 -569.88 -2.90 -20.09 16 9 C 0.18 4.47 2.61 45.04 0.12 4.59 16 10 H 0.09 2.38 7.58 -2.39 -0.02 2.36 16 11 C -0.13 -3.15 5.58 30.68 0.17 -2.98 16 12 C -0.10 -2.22 6.09 30.65 0.19 -2.04 16 13 C 0.04 0.94 5.09 86.33 0.44 1.38 16 14 N -0.50 -12.30 4.86 -900.91 -4.38 -16.68 16 15 C 0.04 1.03 5.86 85.56 0.50 1.53 16 16 C 0.46 16.53 7.25 87.66 0.64 17.16 16 17 O -0.59 -25.94 11.62 -3.05 -0.04 -25.98 16 18 N -0.71 -27.78 5.55 -466.80 -2.59 -30.37 16 19 C 0.27 14.28 5.43 85.64 0.46 14.74 16 20 C -0.56 -29.58 9.28 25.60 0.24 -29.35 16 21 H 0.08 3.99 7.60 -2.91 -0.02 3.97 16 22 C 0.00 0.16 5.46 84.66 0.46 0.62 16 23 N -0.93 -55.59 13.29 21.45 0.28 -55.30 16 24 Si 0.98 41.70 29.54 68.60 2.03 43.73 16 25 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 26 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 27 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 28 C 0.03 0.84 4.45 86.32 0.38 1.23 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.06 1.47 5.88 -2.39 -0.01 1.45 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 1.48 5.88 -2.39 -0.01 1.47 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.41 9.34 8.71 -92.71 -0.81 8.53 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.03 1.07 6.00 -2.39 -0.01 1.06 16 44 H 0.09 1.94 8.06 -2.39 -0.02 1.92 16 45 H 0.13 2.43 8.06 -2.39 -0.02 2.41 16 46 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.41 13.05 8.32 -92.71 -0.77 12.28 16 48 H -0.01 -0.90 8.14 -2.38 -0.02 -0.92 16 49 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 50 H 0.27 15.02 8.31 -92.70 -0.77 14.24 16 51 H 0.08 2.00 8.12 -2.39 -0.02 1.98 16 52 H 0.06 1.99 5.36 -2.39 -0.01 1.98 16 Total: -1.00 -72.02 406.46 -2.09 -74.12 By element: Atomic # 1 Polarization: 36.62 SS G_CDS: -0.65 Total: 35.96 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: 6.47 Total: 21.13 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -9.58 Total: -122.44 kcal Atomic # 8 Polarization: -52.14 SS G_CDS: -0.36 Total: -52.50 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -72.02 -2.09 -74.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056316475.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.526 kcal (2) G-P(sol) polarization free energy of solvation -72.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds