Wall clock time and date at job start Wed Apr 1 2020 00:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 119.99597 * 2 1 4 4 O 1.21516 * 119.99821 * 179.97438 * 3 2 1 5 5 O 1.34629 * 120.00572 * 359.97438 * 3 2 1 6 6 C 1.45199 * 117.00329 * 180.02562 * 5 3 2 7 7 C 1.52994 * 109.47216 * 59.99805 * 6 5 3 8 8 C 1.53005 * 109.47340 * 180.02562 * 6 5 3 9 9 C 1.53003 * 109.46978 * 299.99893 * 6 5 3 10 10 C 1.46499 * 119.99877 * 179.97438 * 2 1 3 11 11 H 1.08998 * 109.49947 * 179.97438 * 10 2 1 12 12 C 1.53125 * 109.53325 * 59.82935 * 10 2 1 13 13 C 1.53111 * 109.15887 * 182.37957 * 12 10 2 14 14 C 1.53037 * 109.27863 * 57.65458 * 13 12 10 15 15 N 1.46839 * 109.52742 * 300.81946 * 14 13 12 16 16 C 1.46893 * 111.00650 * 185.83779 * 15 14 13 17 17 C 1.50694 * 109.47601 * 169.39801 * 16 15 14 18 18 O 1.21292 * 120.00148 * 353.73404 * 17 16 15 19 19 N 1.34780 * 120.00201 * 173.73174 * 17 16 15 20 20 C 1.37096 * 119.99996 * 180.02562 * 19 17 16 21 21 H 1.07996 * 119.99915 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00008 * 179.97438 * 20 19 17 23 23 N 1.31418 * 119.99723 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00062 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46857 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46721 * 120.00115 * 24 22 20 27 27 H 1.48495 * 109.46874 * 240.00066 * 24 22 20 28 28 C 1.46848 * 111.19539 * 61.73735 * 15 14 13 29 29 H 1.08993 * 109.47674 * 270.00133 * 1 2 3 30 30 H 1.08998 * 109.46914 * 30.00609 * 1 2 3 31 31 H 1.09007 * 109.47004 * 150.00463 * 1 2 3 32 32 H 1.08998 * 109.47035 * 60.00483 * 7 6 5 33 33 H 1.09004 * 109.47097 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47420 * 299.99974 * 7 6 5 35 35 H 1.08999 * 109.47089 * 59.99672 * 8 6 5 36 36 H 1.08999 * 109.46946 * 179.97438 * 8 6 5 37 37 H 1.09005 * 109.46496 * 299.99566 * 8 6 5 38 38 H 1.08996 * 109.46963 * 59.99830 * 9 6 5 39 39 H 1.08996 * 109.46987 * 180.02562 * 9 6 5 40 40 H 1.09008 * 109.46669 * 299.99869 * 9 6 5 41 41 H 1.09000 * 109.52103 * 302.29074 * 12 10 2 42 42 H 1.09006 * 109.52163 * 62.41554 * 12 10 2 43 43 H 1.08997 * 109.50359 * 177.59717 * 13 12 10 44 44 H 1.09000 * 109.50779 * 297.67664 * 13 12 10 45 45 H 1.09000 * 109.46659 * 180.79870 * 14 13 12 46 46 H 1.09008 * 109.46129 * 60.83740 * 14 13 12 47 47 H 1.09004 * 109.46950 * 49.39506 * 16 15 14 48 48 H 1.09005 * 109.47174 * 289.40514 * 16 15 14 49 49 H 0.96997 * 119.99710 * 0.02562 * 19 17 16 50 50 H 0.96998 * 119.99269 * 179.97438 * 23 22 20 51 51 H 1.08993 * 109.46227 * 58.28261 * 28 15 14 52 52 H 1.09011 * 109.46211 * 178.24673 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3540 1.1673 0.0005 5 8 1.4657 2.3332 -0.0005 6 6 2.2565 3.5509 -0.0011 7 6 3.1391 3.5853 -1.2502 8 6 1.3244 4.7643 -0.0010 9 6 3.1391 3.5864 1.2482 10 6 2.1975 -1.2687 0.0006 11 1 3.2692 -1.0701 0.0000 12 6 1.8254 -2.0753 -1.2467 13 6 2.5495 -3.4238 -1.2076 14 6 2.1701 -4.1640 0.0770 15 7 2.5469 -3.3520 1.2409 16 6 2.3245 -4.0894 2.4917 17 6 2.9568 -3.3400 3.6360 18 8 3.6318 -2.3563 3.4175 19 7 2.7723 -3.7629 4.9024 20 6 3.3471 -3.0808 5.9435 21 1 3.9481 -2.2049 5.7488 22 6 3.1565 -3.5164 7.2491 23 7 2.4256 -4.5826 7.4859 24 14 3.9403 -2.5875 8.6676 25 1 4.7085 -1.4321 8.1382 26 1 2.8799 -2.0979 9.5847 27 1 4.8550 -3.4936 9.4073 28 6 1.8282 -2.0714 1.2500 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8901 -0.5138 32 1 2.5103 3.5601 -2.1402 33 1 3.7331 4.4993 -1.2504 34 1 3.8032 2.7209 -1.2499 35 1 0.6959 4.7396 0.8892 36 1 1.9181 5.6785 -0.0009 37 1 0.6954 4.7392 -0.8908 38 1 3.8031 2.7220 1.2486 39 1 3.7324 4.5007 1.2480 40 1 2.5102 3.5619 2.1382 41 1 0.7481 -2.2406 -1.2656 42 1 2.1252 -1.5255 -2.1389 43 1 2.2555 -4.0199 -2.0715 44 1 3.6268 -3.2592 -1.2287 45 1 2.6950 -5.1185 0.1147 46 1 1.0945 -4.3406 0.0902 47 1 2.7729 -5.0800 2.4141 48 1 1.2537 -4.1884 2.6696 49 1 2.2328 -4.5498 5.0772 50 1 2.2928 -4.8869 8.3973 51 1 0.7544 -2.2577 1.2579 52 1 2.1051 -1.5059 2.1399 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108858708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:54 Heat of formation + Delta-G solvation = -132.527406 kcal Electronic energy + Delta-G solvation = -31715.043586 eV Core-core repulsion = 27520.908596 eV Total energy + Delta-G solvation = -4194.134989 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.99913 -40.75144 -39.60530 -38.14261 -36.63650 -35.94394 -34.99910 -33.80673 -33.23377 -31.02274 -29.00887 -28.39747 -28.31869 -27.90645 -26.52970 -24.78950 -24.17150 -22.45431 -21.04266 -20.63915 -20.31140 -19.89377 -18.90688 -17.91198 -17.76098 -17.37539 -16.96853 -16.57136 -16.33207 -16.22383 -15.74988 -15.52227 -15.43631 -15.19732 -14.88084 -14.78154 -14.56177 -14.37203 -14.11834 -13.71529 -13.58841 -13.44752 -13.25662 -13.19136 -13.14042 -13.05409 -12.87842 -12.86089 -12.74316 -12.51793 -12.43156 -12.39104 -12.25018 -12.15101 -11.80850 -11.67597 -11.55141 -11.44294 -11.40394 -11.07103 -10.30860 -10.01259 -9.80461 -9.18700 -8.48281 -5.96445 1.05049 1.33695 1.38544 1.52834 1.72359 2.05439 2.26912 2.68620 2.91769 3.18524 3.38405 3.72572 3.75391 3.77738 3.80472 3.93090 4.03250 4.10983 4.20852 4.24355 4.32976 4.44841 4.46189 4.54462 4.55390 4.58584 4.64827 4.67926 4.70317 4.72915 4.73577 4.81079 4.86593 4.86853 4.95091 5.00462 5.06735 5.10922 5.21684 5.26068 5.30564 5.36880 5.39476 5.44449 5.48809 5.88201 6.06798 6.22248 6.29650 6.60573 7.12834 7.25481 7.56213 8.13803 8.69437 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009681 B = 0.003246 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.433432 B = 8625.193818 C =10817.726432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.594 5.594 3 C 0.643 3.357 4 O -0.596 6.596 5 O -0.362 6.362 6 C 0.123 3.877 7 C -0.176 4.176 8 C -0.131 4.131 9 C -0.183 4.183 10 C 0.166 3.834 11 H 0.071 0.929 12 C -0.117 4.117 13 C -0.107 4.107 14 C 0.051 3.949 15 N -0.537 5.537 16 C 0.062 3.938 17 C 0.438 3.562 18 O -0.617 6.617 19 N -0.575 5.575 20 C -0.331 4.331 21 H 0.073 0.927 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.989 3.011 25 H -0.278 1.278 26 H -0.269 1.269 27 H -0.268 1.268 28 C 0.061 3.939 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.094 0.906 40 H 0.053 0.947 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.108 0.892 44 H 0.057 0.943 45 H 0.090 0.910 46 H 0.054 0.946 47 H 0.117 0.883 48 H 0.070 0.930 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.048 0.952 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.205 8.545 -20.458 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.333 5.333 3 C 0.398 3.602 4 O -0.487 6.487 5 O -0.276 6.276 6 C 0.087 3.913 7 C -0.233 4.233 8 C -0.188 4.188 9 C -0.241 4.241 10 C 0.063 3.937 11 H 0.089 0.911 12 C -0.155 4.155 13 C -0.145 4.145 14 C -0.076 4.076 15 N -0.263 5.263 16 C -0.069 4.069 17 C 0.225 3.775 18 O -0.503 6.503 19 N -0.213 5.213 20 C -0.461 4.461 21 H 0.091 0.909 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.813 3.187 25 H -0.203 1.203 26 H -0.194 1.194 27 H -0.193 1.193 28 C -0.068 4.068 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.126 0.874 44 H 0.076 0.924 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.135 0.865 48 H 0.088 0.912 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.066 0.934 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.957 9.297 -20.468 23.847 hybrid contribution -0.281 -0.189 1.558 1.594 sum -8.237 9.108 -18.910 22.548 Atomic orbital electron populations 1.21963 0.76811 1.05098 1.02506 1.46830 1.08454 1.02608 1.75432 1.18264 0.83851 0.82032 0.76016 1.90902 1.13872 1.87165 1.56750 1.86287 1.41100 1.13736 1.86502 1.22433 0.91728 0.81002 0.96127 1.22438 1.00358 1.04128 0.96403 1.21861 0.99281 0.93908 1.03778 1.22496 1.00563 1.03987 0.97016 1.20939 0.96483 0.80770 0.95473 0.91118 1.21919 1.02085 0.95971 0.95541 1.21548 1.00575 0.95053 0.97367 1.22327 0.99771 0.96645 0.88834 1.61290 1.59084 1.03926 1.01984 1.21722 0.99717 0.97603 0.87896 1.20930 0.85066 0.87053 0.84442 1.90523 1.44656 1.30289 1.84789 1.41930 1.46612 1.27948 1.04796 1.19625 1.29634 1.10633 0.86212 0.90938 1.25977 0.97412 0.97348 1.00340 1.69671 1.39403 1.24263 1.22681 0.84931 0.78222 0.78016 0.77526 1.20299 1.19365 1.19323 1.22198 0.95512 0.91100 0.97960 0.93080 0.89234 0.88206 0.91185 0.89034 0.92572 0.91558 0.87910 0.90417 0.93044 0.88764 0.92756 0.89254 0.90895 0.87380 0.92450 0.89132 0.92817 0.86545 0.91228 0.76954 0.91274 0.93445 0.93912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.53 9.49 127.77 1.21 2.74 16 2 N -0.59 -16.96 2.77 -952.68 -2.64 -19.59 16 3 C 0.64 21.31 7.70 129.79 1.00 22.31 16 4 O -0.60 -23.78 11.21 19.79 0.22 -23.56 16 5 O -0.36 -10.04 8.71 -55.39 -0.48 -10.52 16 6 C 0.12 2.85 1.13 -10.79 -0.01 2.84 16 7 C -0.18 -3.80 8.37 71.98 0.60 -3.20 16 8 C -0.13 -1.94 8.85 71.98 0.64 -1.31 16 9 C -0.18 -4.86 8.37 71.98 0.60 -4.26 16 10 C 0.17 5.03 2.69 45.04 0.12 5.15 16 11 H 0.07 2.78 6.90 -2.39 -0.02 2.77 16 12 C -0.12 -2.37 5.31 30.67 0.16 -2.20 16 13 C -0.11 -2.03 6.09 30.64 0.19 -1.85 16 14 C 0.05 1.11 5.46 86.33 0.47 1.58 16 15 N -0.54 -17.73 4.35 -900.96 -3.92 -21.64 16 16 C 0.06 2.17 5.45 85.56 0.47 2.63 16 17 C 0.44 21.73 7.31 87.65 0.64 22.37 16 18 O -0.62 -36.40 14.29 -3.07 -0.04 -36.44 16 19 N -0.57 -30.42 5.29 -306.99 -1.62 -32.04 16 20 C -0.33 -19.51 9.68 84.04 0.81 -18.69 16 21 H 0.07 4.63 7.16 -2.91 -0.02 4.61 16 22 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 23 N -0.92 -50.32 13.05 21.66 0.28 -50.03 16 24 Si 0.99 44.33 29.55 68.60 2.03 46.35 16 25 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 28 C 0.06 2.08 4.41 86.32 0.38 2.47 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.51 7.37 -2.39 -0.02 1.50 16 31 H 0.10 1.39 6.38 -2.38 -0.02 1.38 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.06 1.62 5.88 -2.39 -0.01 1.60 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.05 1.79 5.88 -2.39 -0.01 1.78 16 39 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.09 1.37 6.58 -2.39 -0.02 1.36 16 42 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.09 1.76 8.01 -2.39 -0.02 1.74 16 46 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 47 H 0.12 3.52 7.98 -2.38 -0.02 3.50 16 48 H 0.07 2.13 8.12 -2.38 -0.02 2.12 16 49 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 50 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 51 H 0.05 1.37 7.64 -2.39 -0.02 1.35 16 52 H 0.04 1.95 6.06 -2.38 -0.01 1.94 16 Total: -1.00 -79.24 404.21 1.77 -77.47 By element: Atomic # 1 Polarization: 39.38 SS G_CDS: 0.18 Total: 39.56 kcal Atomic # 6 Polarization: 22.69 SS G_CDS: 7.75 Total: 30.44 kcal Atomic # 7 Polarization: -115.42 SS G_CDS: -7.89 Total: -123.31 kcal Atomic # 8 Polarization: -70.21 SS G_CDS: -0.30 Total: -70.52 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -79.24 1.77 -77.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108858708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.057 kcal (2) G-P(sol) polarization free energy of solvation -79.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds