Wall clock time and date at job start Wed Apr 1 2020 01:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47448 * 2 1 4 4 N 1.46499 * 109.47417 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00079 * 274.34387 * 4 3 2 6 6 H 1.08004 * 120.00034 * 337.79586 * 5 4 3 7 7 C 1.38815 * 120.00274 * 157.80453 * 5 4 3 8 8 N 1.31616 * 119.99984 * 7.72250 * 7 5 4 9 9 Si 1.86797 * 120.00053 * 187.72984 * 7 5 4 10 10 H 1.48506 * 109.47272 * 89.99825 * 9 7 5 11 11 H 1.48496 * 109.46943 * 209.99629 * 9 7 5 12 12 H 1.48499 * 109.47463 * 329.99578 * 9 7 5 13 13 C 1.46499 * 119.99847 * 94.33878 * 4 3 2 14 14 C 1.50708 * 109.47036 * 270.00285 * 13 4 3 15 15 O 1.21279 * 119.99913 * 0.02562 * 14 13 4 16 16 N 1.34779 * 119.99719 * 180.02562 * 14 13 4 17 17 C 1.46498 * 119.99686 * 179.97438 * 16 14 13 18 18 C 1.53066 * 109.44260 * 84.79650 * 17 16 14 19 19 C 1.53195 * 109.29731 * 181.23501 * 18 17 16 20 20 N 1.46927 * 108.89370 * 305.57855 * 19 18 17 21 21 C 1.34776 * 120.63088 * 233.51692 * 20 19 18 22 22 O 1.21507 * 119.99948 * 359.97438 * 21 20 19 23 23 O 1.34633 * 119.99712 * 179.97438 * 21 20 19 24 24 C 1.45204 * 116.99857 * 179.97438 * 23 21 20 25 25 C 1.52997 * 109.47241 * 179.97438 * 24 23 21 26 26 C 1.46927 * 118.73709 * 53.53627 * 20 19 18 27 27 C 1.53042 * 109.46226 * 205.00062 * 17 16 14 28 28 H 1.08999 * 109.47545 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46762 * 300.00046 * 1 2 3 30 30 H 1.08996 * 109.47068 * 59.99627 * 1 2 3 31 31 H 1.09001 * 109.46762 * 239.99954 * 2 1 3 32 32 H 1.08996 * 109.47068 * 120.00373 * 2 1 3 33 33 H 1.09001 * 109.46683 * 60.00398 * 3 2 1 34 34 H 1.08996 * 109.47290 * 300.00237 * 3 2 1 35 35 H 0.96995 * 120.00199 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.47254 * 150.00621 * 13 4 3 37 37 H 1.08994 * 109.47086 * 30.00109 * 13 4 3 38 38 H 0.96995 * 120.00353 * 0.02562 * 16 14 13 39 39 H 1.08998 * 109.46162 * 324.97192 * 17 16 14 40 40 H 1.09000 * 109.39025 * 61.35668 * 18 17 16 41 41 H 1.09005 * 109.62501 * 301.25022 * 18 17 16 42 42 H 1.09000 * 109.58614 * 185.72152 * 19 18 17 43 43 H 1.09005 * 109.58627 * 65.43459 * 19 18 17 44 44 H 1.08997 * 109.47397 * 300.00422 * 24 23 21 45 45 H 1.09013 * 109.46782 * 59.99862 * 24 23 21 46 46 H 1.09002 * 109.46563 * 60.00551 * 25 24 23 47 47 H 1.08998 * 109.46968 * 180.02562 * 25 24 23 48 48 H 1.08993 * 109.47494 * 300.00200 * 25 24 23 49 49 H 1.08994 * 109.58985 * 66.17771 * 26 20 19 50 50 H 1.08998 * 109.58734 * 186.46738 * 26 20 19 51 51 H 1.09001 * 109.49645 * 58.67102 * 27 17 16 52 52 H 1.09001 * 109.51962 * 298.60120 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1892 1.3528 1.1834 6 1 3.7089 1.6372 2.1080 7 6 5.5002 0.8966 1.1941 8 7 6.1361 0.6950 0.0595 9 14 6.3618 0.5686 2.8187 10 1 6.1302 -0.8405 3.2263 11 1 7.8194 0.8055 2.6625 12 1 5.8209 1.4801 3.8588 13 6 4.2381 1.5382 -1.2642 14 6 4.4894 0.1542 -1.8052 15 8 4.0946 -0.8164 -1.1946 16 7 5.1528 -0.0047 -2.9676 17 6 5.3976 -1.3500 -3.4932 18 6 4.1766 -1.8155 -4.2904 19 6 4.4238 -3.2344 -4.8124 20 7 5.6834 -3.2505 -5.5685 21 6 5.7213 -3.7244 -6.8297 22 8 4.7076 -4.1441 -7.3517 23 8 6.8825 -3.7327 -7.5110 24 6 6.8490 -4.2579 -8.8643 25 6 8.2503 -4.1859 -9.4742 26 6 6.9011 -2.7406 -4.9235 27 6 6.6279 -1.3259 -4.4031 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6768 1.9563 -0.8899 35 1 7.0520 0.3758 0.0669 36 1 5.1904 2.0406 -1.0951 37 1 3.6493 2.1079 -1.9831 38 1 5.4689 0.7716 -3.4557 39 1 5.5718 -2.0372 -2.6653 40 1 4.0151 -1.1414 -5.1315 41 1 3.2966 -1.8127 -3.6471 42 1 3.6025 -3.5322 -5.4643 43 1 4.4929 -3.9259 -3.9726 44 1 6.5142 -5.2950 -8.8434 45 1 6.1599 -3.6658 -9.4668 46 1 8.9395 -4.7777 -8.8718 47 1 8.2249 -4.5797 -10.4902 48 1 8.5846 -3.1487 -9.4952 49 1 7.1731 -3.3898 -4.0913 50 1 7.7150 -2.7148 -5.6480 51 1 7.4910 -0.9729 -3.8387 52 1 6.4455 -0.6576 -5.2446 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118004512.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:22 Heat of formation + Delta-G solvation = -96.197494 kcal Electronic energy + Delta-G solvation = -31472.266647 eV Core-core repulsion = 27279.707041 eV Total energy + Delta-G solvation = -4192.559606 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.73873 -38.95463 -37.70409 -36.45553 -35.54365 -33.85456 -32.81962 -32.03864 -31.05466 -30.75407 -30.36879 -27.09399 -25.45074 -24.88669 -23.65248 -23.03468 -22.11671 -21.29034 -20.09501 -19.87176 -19.22138 -18.22415 -17.07954 -16.89296 -16.76535 -15.62171 -15.33864 -15.00989 -14.98512 -14.79848 -14.29655 -14.15401 -13.79382 -13.69946 -13.50652 -13.15893 -13.06228 -13.02717 -12.81246 -12.63979 -12.31312 -12.12141 -12.05754 -11.85182 -11.72250 -11.41756 -11.29387 -11.09932 -10.94862 -10.78313 -10.72105 -10.71418 -10.63435 -10.51244 -10.36802 -10.21549 -9.98497 -9.81042 -9.52482 -8.90830 -8.71099 -8.15848 -7.97842 -6.75065 -5.77786 -3.15985 2.00755 2.72237 3.40663 3.46792 3.48711 3.69946 4.15054 4.33241 4.58247 4.66625 4.68691 4.78428 4.97684 5.00799 5.04893 5.21520 5.29274 5.33242 5.41341 5.48101 5.50699 5.56341 5.60716 5.64844 5.74090 5.85671 5.86686 5.90626 5.91018 6.02325 6.13603 6.20454 6.25400 6.30761 6.36943 6.51911 6.53357 6.59556 6.64636 6.73640 6.95883 7.17767 7.23983 7.35823 7.47894 7.58374 7.77685 8.17588 8.38470 8.74248 9.23474 9.78932 9.93601 10.32506 11.29148 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014965 B = 0.002725 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.585921 B =10272.286682 C =11500.207787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.152 3.848 4 N -0.579 5.579 5 C -0.237 4.237 6 H 0.072 0.928 7 C 0.007 3.993 8 N -0.909 5.909 9 Si 0.908 3.092 10 H -0.289 1.289 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.164 3.836 14 C 0.533 3.467 15 O -0.538 6.538 16 N -0.746 5.746 17 C 0.154 3.846 18 C -0.142 4.142 19 C 0.130 3.870 20 N -0.591 5.591 21 C 0.650 3.350 22 O -0.578 6.578 23 O -0.371 6.371 24 C 0.082 3.918 25 C -0.153 4.153 26 C 0.116 3.884 27 C -0.140 4.140 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.034 0.966 35 H 0.252 0.748 36 H 0.117 0.883 37 H 0.023 0.977 38 H 0.385 0.615 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.080 0.920 48 H 0.067 0.933 49 H 0.073 0.927 50 H 0.092 0.908 51 H 0.085 0.915 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.487 -4.716 -16.291 17.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.025 3.975 4 N -0.298 5.298 5 C -0.366 4.366 6 H 0.090 0.910 7 C -0.190 4.190 8 N -0.556 5.556 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.220 1.220 12 H -0.208 1.208 13 C 0.034 3.966 14 C 0.321 3.679 15 O -0.412 6.412 16 N -0.400 5.400 17 C 0.047 3.953 18 C -0.181 4.181 19 C 0.009 3.991 20 N -0.331 5.331 21 C 0.405 3.595 22 O -0.468 6.468 23 O -0.285 6.285 24 C 0.007 3.993 25 C -0.210 4.210 26 C -0.007 4.007 27 C -0.179 4.179 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.135 0.865 37 H 0.041 0.959 38 H 0.217 0.783 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.099 0.901 48 H 0.086 0.914 49 H 0.092 0.908 50 H 0.110 0.890 51 H 0.103 0.897 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.060 -5.571 -15.985 17.053 hybrid contribution 0.795 -0.220 0.567 1.001 sum 2.855 -5.791 -15.418 16.716 Atomic orbital electron populations 1.21789 0.98305 1.00165 1.00368 1.22148 0.92297 1.00439 1.03080 1.20908 0.84440 0.93985 0.98155 1.43766 0.99599 1.84123 1.02316 1.19227 0.95210 1.36004 0.86186 0.90974 1.24893 0.97862 0.99335 0.96881 1.69653 1.11382 1.50882 1.23704 0.86194 0.78275 0.78301 0.83331 1.21667 1.21986 1.20786 1.20734 0.98513 0.91412 0.85927 1.22032 0.74652 0.94223 0.77027 1.90479 1.51763 1.42051 1.56905 1.46241 1.62129 1.06074 1.25545 1.20552 0.92018 0.87583 0.95104 1.22371 1.00496 0.95120 1.00158 1.21688 0.84392 0.97917 0.95152 1.47034 1.11594 1.63685 1.10783 1.17984 0.81819 0.77738 0.81986 1.90971 1.34271 1.52547 1.69025 1.86229 1.34092 1.78743 1.29438 1.22924 0.98905 0.99189 0.78288 1.21823 0.95044 1.03511 1.00604 1.21724 0.86092 0.94848 0.98042 1.22195 0.99569 0.96334 0.99764 0.94019 0.93691 0.93849 0.91607 0.92354 0.94155 0.94738 0.93728 0.86533 0.95883 0.78274 0.89981 0.91829 0.89743 0.88775 0.90747 0.91297 0.91270 0.91475 0.90094 0.91435 0.90839 0.88966 0.89668 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 37.16 0.37 -2.04 16 2 C -0.14 -2.88 5.67 -26.73 -0.15 -3.03 16 3 C 0.15 3.19 5.72 -4.04 -0.02 3.16 16 4 N -0.58 -14.12 2.07 -174.61 -0.36 -14.48 16 5 C -0.24 -6.36 9.70 -15.06 -0.15 -6.51 16 6 H 0.07 1.92 7.84 -52.48 -0.41 1.51 16 7 C 0.01 0.18 5.41 -17.43 -0.09 0.08 16 8 N -0.91 -24.35 8.21 55.49 0.46 -23.89 16 9 Si 0.91 21.96 29.56 -169.99 -5.02 16.94 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.16 3.69 5.47 -5.19 -0.03 3.66 16 14 C 0.53 11.76 5.75 -10.98 -0.06 11.69 16 15 O -0.54 -13.87 13.55 5.56 0.08 -13.79 16 16 N -0.75 -12.96 5.08 -53.75 -0.27 -13.24 16 17 C 0.15 2.36 2.41 -67.88 -0.16 2.20 16 18 C -0.14 -2.01 5.66 -26.60 -0.15 -2.16 16 19 C 0.13 1.71 6.43 -3.71 -0.02 1.69 16 20 N -0.59 -7.59 2.97 -178.56 -0.53 -8.12 16 21 C 0.65 9.09 8.43 54.05 0.46 9.54 16 22 O -0.58 -9.57 15.54 -19.28 -0.30 -9.87 16 23 O -0.37 -4.36 8.86 -40.30 -0.36 -4.72 16 24 C 0.08 0.74 6.19 37.16 0.23 0.97 16 25 C -0.15 -0.92 10.29 37.16 0.38 -0.54 16 26 C 0.12 1.29 6.45 -3.71 -0.02 1.26 16 27 C -0.14 -1.67 5.55 -26.61 -0.15 -1.82 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.49 6.38 -51.93 -0.33 1.16 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.04 0.82 8.07 -51.93 -0.42 0.41 16 34 H 0.03 0.66 7.84 -51.93 -0.41 0.25 16 35 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 36 H 0.12 2.83 6.24 -51.93 -0.32 2.51 16 37 H 0.02 0.46 7.86 -51.93 -0.41 0.05 16 38 H 0.39 5.79 8.60 -40.82 -0.35 5.44 16 39 H 0.08 1.53 7.58 -51.93 -0.39 1.13 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.09 1.28 7.00 -51.93 -0.36 0.92 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.09 0.91 6.93 -51.93 -0.36 0.55 16 51 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 52 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 410.98 15.07 6.19 6.19 Total: -1.00 -32.22 410.98 -8.95 -41.17 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -9.25 Total: 5.66 kcal Atomic # 6 Polarization: 17.74 SS G_CDS: 0.42 Total: 18.16 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.71 Total: -59.73 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.58 Total: -28.39 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.22 -8.95 -41.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118004512.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.030 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds