Wall clock time and date at job start Wed Apr 1 2020 01:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47448 * 2 1 4 4 N 1.46499 * 109.47417 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00079 * 274.34387 * 4 3 2 6 6 H 1.08004 * 120.00034 * 337.79586 * 5 4 3 7 7 C 1.38815 * 120.00274 * 157.80453 * 5 4 3 8 8 N 1.31616 * 119.99984 * 7.72250 * 7 5 4 9 9 Si 1.86797 * 120.00053 * 187.72984 * 7 5 4 10 10 H 1.48506 * 109.47272 * 89.99825 * 9 7 5 11 11 H 1.48496 * 109.46943 * 209.99629 * 9 7 5 12 12 H 1.48499 * 109.47463 * 329.99578 * 9 7 5 13 13 C 1.46499 * 119.99847 * 94.33878 * 4 3 2 14 14 C 1.50708 * 109.47036 * 270.00285 * 13 4 3 15 15 O 1.21279 * 119.99913 * 0.02562 * 14 13 4 16 16 N 1.34779 * 119.99719 * 180.02562 * 14 13 4 17 17 C 1.46498 * 119.99686 * 179.97438 * 16 14 13 18 18 C 1.53066 * 109.44260 * 84.79650 * 17 16 14 19 19 C 1.53195 * 109.29731 * 181.23501 * 18 17 16 20 20 N 1.46927 * 108.89370 * 305.57855 * 19 18 17 21 21 C 1.34776 * 120.63088 * 233.51692 * 20 19 18 22 22 O 1.21507 * 119.99948 * 359.97438 * 21 20 19 23 23 O 1.34633 * 119.99712 * 179.97438 * 21 20 19 24 24 C 1.45204 * 116.99857 * 179.97438 * 23 21 20 25 25 C 1.52997 * 109.47241 * 179.97438 * 24 23 21 26 26 C 1.46927 * 118.73709 * 53.53627 * 20 19 18 27 27 C 1.53042 * 109.46226 * 205.00062 * 17 16 14 28 28 H 1.08999 * 109.47545 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46762 * 300.00046 * 1 2 3 30 30 H 1.08996 * 109.47068 * 59.99627 * 1 2 3 31 31 H 1.09001 * 109.46762 * 239.99954 * 2 1 3 32 32 H 1.08996 * 109.47068 * 120.00373 * 2 1 3 33 33 H 1.09001 * 109.46683 * 60.00398 * 3 2 1 34 34 H 1.08996 * 109.47290 * 300.00237 * 3 2 1 35 35 H 0.96995 * 120.00199 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.47254 * 150.00621 * 13 4 3 37 37 H 1.08994 * 109.47086 * 30.00109 * 13 4 3 38 38 H 0.96995 * 120.00353 * 0.02562 * 16 14 13 39 39 H 1.08998 * 109.46162 * 324.97192 * 17 16 14 40 40 H 1.09000 * 109.39025 * 61.35668 * 18 17 16 41 41 H 1.09005 * 109.62501 * 301.25022 * 18 17 16 42 42 H 1.09000 * 109.58614 * 185.72152 * 19 18 17 43 43 H 1.09005 * 109.58627 * 65.43459 * 19 18 17 44 44 H 1.08997 * 109.47397 * 300.00422 * 24 23 21 45 45 H 1.09013 * 109.46782 * 59.99862 * 24 23 21 46 46 H 1.09002 * 109.46563 * 60.00551 * 25 24 23 47 47 H 1.08998 * 109.46968 * 180.02562 * 25 24 23 48 48 H 1.08993 * 109.47494 * 300.00200 * 25 24 23 49 49 H 1.08994 * 109.58985 * 66.17771 * 26 20 19 50 50 H 1.08998 * 109.58734 * 186.46738 * 26 20 19 51 51 H 1.09001 * 109.49645 * 58.67102 * 27 17 16 52 52 H 1.09001 * 109.51962 * 298.60120 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1892 1.3528 1.1834 6 1 3.7089 1.6372 2.1080 7 6 5.5002 0.8966 1.1941 8 7 6.1361 0.6950 0.0595 9 14 6.3618 0.5686 2.8187 10 1 6.1302 -0.8405 3.2263 11 1 7.8194 0.8055 2.6625 12 1 5.8209 1.4801 3.8588 13 6 4.2381 1.5382 -1.2642 14 6 4.4894 0.1542 -1.8052 15 8 4.0946 -0.8164 -1.1946 16 7 5.1528 -0.0047 -2.9676 17 6 5.3976 -1.3500 -3.4932 18 6 4.1766 -1.8155 -4.2904 19 6 4.4238 -3.2344 -4.8124 20 7 5.6834 -3.2505 -5.5685 21 6 5.7213 -3.7244 -6.8297 22 8 4.7076 -4.1441 -7.3517 23 8 6.8825 -3.7327 -7.5110 24 6 6.8490 -4.2579 -8.8643 25 6 8.2503 -4.1859 -9.4742 26 6 6.9011 -2.7406 -4.9235 27 6 6.6279 -1.3259 -4.4031 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6768 1.9563 -0.8899 35 1 7.0520 0.3758 0.0669 36 1 5.1904 2.0406 -1.0951 37 1 3.6493 2.1079 -1.9831 38 1 5.4689 0.7716 -3.4557 39 1 5.5718 -2.0372 -2.6653 40 1 4.0151 -1.1414 -5.1315 41 1 3.2966 -1.8127 -3.6471 42 1 3.6025 -3.5322 -5.4643 43 1 4.4929 -3.9259 -3.9726 44 1 6.5142 -5.2950 -8.8434 45 1 6.1599 -3.6658 -9.4668 46 1 8.9395 -4.7777 -8.8718 47 1 8.2249 -4.5797 -10.4902 48 1 8.5846 -3.1487 -9.4952 49 1 7.1731 -3.3898 -4.0913 50 1 7.7150 -2.7148 -5.6480 51 1 7.4910 -0.9729 -3.8387 52 1 6.4455 -0.6576 -5.2446 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118004512.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:21 Heat of formation + Delta-G solvation = -115.815392 kcal Electronic energy + Delta-G solvation = -31473.117343 eV Core-core repulsion = 27279.707041 eV Total energy + Delta-G solvation = -4193.410302 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.78684 -40.37044 -39.05656 -37.63017 -37.15355 -35.28500 -34.58259 -32.89880 -32.39326 -32.07854 -31.79058 -28.75516 -27.22279 -26.06277 -24.67016 -23.97933 -23.65941 -22.42629 -21.74834 -21.04381 -20.84715 -19.30796 -18.72875 -18.09977 -17.77166 -17.21958 -17.05691 -16.64926 -15.97194 -15.87403 -15.70321 -15.60641 -15.32377 -14.84697 -14.78675 -14.57521 -14.45913 -14.23889 -14.02492 -13.71317 -13.60985 -13.36959 -13.21669 -12.96091 -12.89589 -12.84968 -12.73537 -12.52265 -12.50366 -12.33019 -12.18042 -12.07653 -11.94504 -11.85361 -11.76681 -11.67595 -11.52726 -11.47868 -11.20824 -10.68428 -10.11966 -9.86735 -9.51559 -8.65116 -7.80288 -5.18121 1.04553 1.44693 1.50202 1.54077 1.64386 2.48848 2.62483 2.77743 2.84781 3.41209 3.70079 3.77200 3.87280 4.00272 4.04201 4.11037 4.15204 4.25947 4.32639 4.34877 4.40006 4.43954 4.49973 4.64407 4.71460 4.73029 4.74612 4.76208 4.82843 4.85414 4.95291 4.96258 4.98297 5.03458 5.08623 5.14914 5.22720 5.30099 5.37759 5.38826 5.42856 5.50226 5.52560 5.67476 5.80376 6.11296 6.20571 6.42598 7.12709 7.12938 7.30814 7.91027 8.20928 8.36061 9.22890 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014965 B = 0.002725 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.585921 B =10272.286682 C =11500.207787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.149 3.851 4 N -0.595 5.595 5 C -0.249 4.249 6 H 0.066 0.934 7 C -0.038 4.038 8 N -0.914 5.914 9 Si 0.958 3.042 10 H -0.305 1.305 11 H -0.291 1.291 12 H -0.273 1.273 13 C 0.162 3.838 14 C 0.535 3.465 15 O -0.580 6.580 16 N -0.733 5.733 17 C 0.155 3.845 18 C -0.128 4.128 19 C 0.136 3.864 20 N -0.589 5.589 21 C 0.649 3.351 22 O -0.609 6.609 23 O -0.368 6.368 24 C 0.073 3.927 25 C -0.145 4.145 26 C 0.119 3.881 27 C -0.127 4.127 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.020 0.980 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.244 0.756 36 H 0.098 0.902 37 H 0.053 0.947 38 H 0.400 0.600 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.103 0.897 48 H 0.069 0.931 49 H 0.077 0.923 50 H 0.112 0.888 51 H 0.089 0.911 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.912 -4.242 -17.900 18.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.023 3.977 4 N -0.315 5.315 5 C -0.379 4.379 6 H 0.084 0.916 7 C -0.233 4.233 8 N -0.561 5.561 9 Si 0.789 3.211 10 H -0.233 1.233 11 H -0.217 1.217 12 H -0.198 1.198 13 C 0.032 3.968 14 C 0.322 3.678 15 O -0.458 6.458 16 N -0.387 5.387 17 C 0.049 3.951 18 C -0.168 4.168 19 C 0.014 3.986 20 N -0.329 5.329 21 C 0.405 3.595 22 O -0.501 6.501 23 O -0.282 6.282 24 C -0.001 4.001 25 C -0.202 4.202 26 C -0.003 4.003 27 C -0.166 4.166 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.234 0.766 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.121 0.879 48 H 0.088 0.912 49 H 0.095 0.905 50 H 0.131 0.869 51 H 0.107 0.893 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.516 -5.065 -17.637 18.522 hybrid contribution 0.648 -0.366 0.999 1.246 sum 3.164 -5.430 -16.638 17.785 Atomic orbital electron populations 1.21684 0.94631 1.01284 1.01977 1.21950 0.95413 0.99425 1.00025 1.21051 0.82826 0.94346 0.99451 1.43958 1.00973 1.84360 1.02220 1.19386 0.95545 1.35887 0.87086 0.91579 1.25464 0.98675 0.99945 0.99188 1.69805 1.10865 1.51115 1.24337 0.85404 0.77496 0.77112 0.81124 1.23348 1.21747 1.19755 1.20726 0.98056 0.91917 0.86074 1.21887 0.74618 0.93488 0.77767 1.90465 1.53651 1.43137 1.58572 1.45991 1.60647 1.07673 1.24367 1.20606 0.94229 0.85550 0.94690 1.22185 0.98934 0.96005 0.99667 1.21543 0.84834 0.97105 0.95090 1.47059 1.11823 1.63436 1.10614 1.18102 0.82002 0.77339 0.82105 1.90949 1.35488 1.53887 1.69761 1.86247 1.32747 1.78618 1.30580 1.23244 1.00952 0.98909 0.77034 1.21837 0.92910 1.03918 1.01493 1.21817 0.85862 0.94091 0.98566 1.22092 0.97720 0.97398 0.99359 0.93224 0.92356 0.91880 0.94003 0.96066 0.93728 0.92319 0.94579 0.88428 0.92913 0.76597 0.93449 0.90879 0.92028 0.89110 0.90729 0.91520 0.91461 0.91251 0.87887 0.91176 0.90495 0.86936 0.89251 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 9.91 71.98 0.71 -3.54 16 2 C -0.13 -5.31 5.67 30.59 0.17 -5.13 16 3 C 0.15 6.17 5.72 86.38 0.49 6.66 16 4 N -0.60 -29.17 2.07 -706.35 -1.46 -30.63 16 5 C -0.25 -13.54 9.70 84.04 0.81 -12.73 16 6 H 0.07 3.57 7.84 -2.91 -0.02 3.55 16 7 C -0.04 -2.07 5.41 84.86 0.46 -1.61 16 8 N -0.91 -49.60 8.21 21.65 0.18 -49.42 16 9 Si 0.96 45.77 29.56 68.60 2.03 47.80 16 10 H -0.31 -15.28 7.11 99.48 0.71 -14.57 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 C 0.16 7.26 5.47 85.64 0.47 7.73 16 14 C 0.53 23.80 5.75 87.66 0.50 24.31 16 15 O -0.58 -30.84 13.55 -3.03 -0.04 -30.88 16 16 N -0.73 -25.20 5.08 -442.36 -2.25 -27.45 16 17 C 0.16 4.72 2.41 45.03 0.11 4.83 16 18 C -0.13 -3.62 5.66 30.68 0.17 -3.44 16 19 C 0.14 3.56 6.43 86.36 0.56 4.12 16 20 N -0.59 -14.44 2.97 -949.26 -2.82 -17.26 16 21 C 0.65 17.38 8.43 129.79 1.09 18.47 16 22 O -0.61 -19.82 15.54 19.82 0.31 -19.51 16 23 O -0.37 -8.01 8.86 -55.42 -0.49 -8.50 16 24 C 0.07 1.20 6.19 71.98 0.45 1.64 16 25 C -0.14 -1.39 10.29 71.98 0.74 -0.65 16 26 C 0.12 2.42 6.45 86.36 0.56 2.97 16 27 C -0.13 -2.81 5.55 30.67 0.17 -2.64 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.04 1.92 6.38 -2.39 -0.02 1.91 16 32 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.04 1.79 8.07 -2.39 -0.02 1.77 16 34 H 0.06 2.13 7.84 -2.39 -0.02 2.11 16 35 H 0.24 13.26 8.31 -92.71 -0.77 12.49 16 36 H 0.10 4.76 6.24 -2.39 -0.01 4.74 16 37 H 0.05 2.01 7.86 -2.39 -0.02 2.00 16 38 H 0.40 11.48 8.60 -92.71 -0.80 10.68 16 39 H 0.05 1.81 7.58 -2.39 -0.02 1.79 16 40 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 42 H 0.09 2.47 7.00 -2.39 -0.02 2.45 16 43 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 44 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 46 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.11 1.90 6.93 -2.39 -0.02 1.88 16 51 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 52 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -71.10 410.98 3.02 -68.08 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.10 Total: 26.79 kcal Atomic # 6 Polarization: 33.51 SS G_CDS: 7.47 Total: 40.99 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -6.35 Total: -124.76 kcal Atomic # 8 Polarization: -58.67 SS G_CDS: -0.22 Total: -58.89 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -71.10 3.02 -68.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118004512.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.735 kcal (2) G-P(sol) polarization free energy of solvation -71.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds