Wall clock time and date at job start Wed Apr 1 2020 00:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.45202 * 109.46867 * 240.00586 * 2 1 3 6 6 C 1.34628 * 117.00407 * 59.99955 * 5 2 1 7 7 O 1.21513 * 120.00136 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00286 * 179.97438 * 6 5 2 9 9 C 1.47082 * 120.87717 * 359.72134 * 8 6 5 10 10 C 1.53697 * 108.27530 * 128.75735 * 9 8 6 11 11 N 1.46894 * 109.25909 * 54.07937 * 10 9 8 12 12 C 1.46904 * 111.00020 * 172.60614 * 11 10 9 13 13 C 1.52993 * 109.47103 * 294.30449 * 12 11 10 14 14 C 1.53003 * 109.47052 * 180.02562 * 13 12 11 15 15 N 1.46497 * 109.47018 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00020 * 180.02562 * 15 14 13 17 17 O 1.21696 * 119.99834 * 359.97438 * 16 15 14 18 18 C 1.46377 * 120.00281 * 179.97438 * 16 15 14 19 19 H 1.07994 * 119.99807 * 359.97438 * 18 16 15 20 20 C 1.40055 * 120.00060 * 179.97438 * 18 16 15 21 21 N 1.30675 * 119.99869 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 119.99779 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47294 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47026 * 120.00381 * 22 20 18 25 25 H 1.48504 * 109.46510 * 239.99950 * 22 20 18 26 26 C 1.46896 * 111.26864 * 296.75870 * 11 10 9 27 27 C 1.47073 * 120.88371 * 179.97438 * 8 6 5 28 28 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 31 31 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 32 32 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 34 34 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 35 35 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 37 37 H 1.09007 * 109.62440 * 248.52448 * 9 8 6 38 38 H 1.08996 * 109.63024 * 9.10279 * 9 8 6 39 39 H 1.09002 * 109.64179 * 294.07508 * 10 9 8 40 40 H 1.08997 * 109.41831 * 173.94410 * 10 9 8 41 41 H 1.08996 * 109.46951 * 54.30234 * 12 11 10 42 42 H 1.09001 * 109.46790 * 174.29797 * 12 11 10 43 43 H 1.09004 * 109.47297 * 299.99917 * 13 12 11 44 44 H 1.08996 * 109.47537 * 59.99591 * 13 12 11 45 45 H 1.08996 * 109.46900 * 299.99723 * 14 13 12 46 46 H 1.08994 * 109.47229 * 59.99912 * 14 13 12 47 47 H 0.97000 * 120.00007 * 359.97438 * 15 14 13 48 48 H 0.96997 * 119.99455 * 180.02562 * 21 20 18 49 49 H 1.09002 * 109.49595 * 303.14168 * 26 11 10 50 50 H 1.09003 * 109.51717 * 183.08136 * 26 11 10 51 51 H 1.09006 * 109.63246 * 350.89817 * 27 8 6 52 52 H 1.08999 * 109.63139 * 111.47706 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1857 6 6 1.6523 -0.1727 -2.3772 7 8 0.9509 0.8184 -2.4252 8 7 2.0681 -0.7598 -3.5170 9 6 2.9224 -1.9565 -3.4815 10 6 2.2872 -3.0291 -4.3806 11 7 2.0610 -2.4675 -5.7190 12 6 1.6183 -3.5069 -6.6580 13 6 2.7457 -4.5200 -6.8660 14 6 2.2848 -5.6022 -7.8445 15 7 3.3646 -6.5720 -8.0441 16 6 3.1844 -7.6202 -8.8718 17 8 2.1246 -7.7613 -9.4531 18 6 4.2634 -8.5889 -9.0717 19 1 5.2041 -8.4634 -8.5561 20 6 4.0760 -9.6785 -9.9314 21 7 2.9376 -9.8305 -10.5548 22 14 5.4528 -10.9151 -10.1859 23 1 6.6299 -10.5198 -9.3715 24 1 4.9909 -12.2630 -9.7678 25 1 5.8321 -10.9450 -11.6214 26 6 1.1028 -1.3550 -5.6750 27 6 1.6840 -0.2176 -4.8291 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 -1.7490 1.2492 35 1 3.1301 -0.7209 1.2493 36 1 1.6767 -0.2075 2.1392 37 1 3.9173 -1.7071 -3.8507 38 1 2.9907 -2.3275 -2.4589 39 1 1.3360 -3.3480 -3.9544 40 1 2.9586 -3.8846 -4.4538 41 1 0.7437 -4.0149 -6.2518 42 1 1.3612 -3.0482 -7.6128 43 1 3.6204 -4.0120 -7.2722 44 1 3.0028 -4.9786 -5.9112 45 1 1.4101 -6.1102 -7.4387 46 1 2.0282 -5.1432 -8.7992 47 1 4.2094 -6.4592 -7.5810 48 1 2.8077 -10.5854 -11.1500 49 1 0.1681 -1.6972 -5.2309 50 1 0.9147 -0.9962 -6.6870 51 1 0.9331 0.5616 -4.6979 52 1 2.5619 0.1959 -5.3256 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131313165.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:35 Heat of formation + Delta-G solvation = -116.468604 kcal Electronic energy + Delta-G solvation = -29928.228380 eV Core-core repulsion = 25734.789753 eV Total energy + Delta-G solvation = -4193.438627 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.18970 -39.33158 -37.53796 -37.10340 -35.51442 -34.38030 -33.59710 -32.37326 -31.52645 -30.63361 -27.80141 -27.75366 -27.73872 -26.21548 -24.28441 -23.95471 -22.70388 -21.02085 -20.77071 -19.65449 -19.45365 -18.22747 -17.13640 -17.00181 -16.53990 -15.85986 -15.62883 -15.34647 -15.29445 -14.99567 -14.90413 -14.66775 -14.57707 -14.03371 -13.90173 -13.81779 -13.77889 -13.03467 -12.84120 -12.60903 -12.47112 -12.33828 -12.27859 -12.25902 -11.99820 -11.80860 -11.75170 -11.64222 -11.61737 -11.49573 -11.28746 -11.06345 -10.94238 -10.90671 -10.71131 -10.43396 -10.37980 -10.28121 -10.18011 -9.17397 -8.84993 -8.52808 -7.60116 -7.47968 -6.17622 -4.62821 1.80263 2.53724 3.13441 3.21515 3.26042 3.43950 3.61052 4.11842 4.33596 4.38425 4.51050 4.52923 4.60410 4.61487 4.68419 4.90136 4.92106 5.02385 5.07553 5.09133 5.16187 5.16603 5.27184 5.31228 5.38400 5.40062 5.44926 5.47159 5.47969 5.53123 5.57282 5.61541 5.69122 5.75498 5.84108 5.91471 5.92526 5.94622 6.09562 6.10325 6.14358 6.59028 6.59748 6.79693 6.81277 7.07137 7.44598 7.95274 8.02918 8.12479 8.34846 9.03751 9.55911 10.61500 10.80299 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024109 B = 0.001625 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.091771 B =17228.865622 C =17862.214511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.183 4.183 4 C -0.141 4.141 5 O -0.362 6.362 6 C 0.654 3.346 7 O -0.572 6.572 8 N -0.597 5.597 9 C 0.117 3.883 10 C 0.036 3.964 11 N -0.537 5.537 12 C 0.060 3.940 13 C -0.124 4.124 14 C 0.134 3.866 15 N -0.768 5.768 16 C 0.553 3.447 17 O -0.582 6.582 18 C -0.546 4.546 19 H 0.068 0.932 20 C 0.087 3.913 21 N -0.769 5.769 22 Si 0.908 3.092 23 H -0.264 1.264 24 H -0.276 1.276 25 H -0.276 1.276 26 C 0.040 3.960 27 C 0.133 3.867 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.039 0.961 40 H 0.096 0.904 41 H 0.037 0.963 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.044 0.956 46 H 0.047 0.953 47 H 0.380 0.620 48 H 0.267 0.733 49 H 0.039 0.961 50 H 0.092 0.908 51 H 0.098 0.902 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.074 21.445 21.522 30.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.240 4.240 4 C -0.198 4.198 5 O -0.277 6.277 6 C 0.409 3.591 7 O -0.462 6.462 8 N -0.338 5.338 9 C -0.006 4.006 10 C -0.093 4.093 11 N -0.262 5.262 12 C -0.068 4.068 13 C -0.162 4.162 14 C 0.009 3.991 15 N -0.424 5.424 16 C 0.357 3.643 17 O -0.465 6.465 18 C -0.583 4.583 19 H 0.086 0.914 20 C -0.133 4.133 21 N -0.398 5.398 22 Si 0.732 3.268 23 H -0.188 1.188 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.089 4.089 27 C 0.012 3.988 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.057 0.943 40 H 0.114 0.886 41 H 0.055 0.945 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.211 0.789 48 H 0.078 0.922 49 H 0.057 0.943 50 H 0.111 0.889 51 H 0.116 0.884 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.779 21.739 20.869 30.187 hybrid contribution 0.266 -0.906 0.403 1.027 sum -1.513 20.834 21.272 29.813 Atomic orbital electron populations 1.22514 0.94004 1.02947 1.04563 1.22080 0.94371 0.92221 0.81454 1.22507 1.01554 0.95351 1.04567 1.21862 1.02296 1.01183 0.94464 1.86294 1.71476 1.56275 1.13651 1.17961 0.78639 0.81362 0.81118 1.90881 1.41586 1.26980 1.86742 1.47050 1.52787 1.30340 1.03588 1.21965 0.93849 0.83913 1.00842 1.22656 1.00581 0.97339 0.88706 1.61949 1.46152 1.09975 1.08139 1.22059 0.96688 0.92014 0.96053 1.21785 0.98629 0.95824 0.99950 1.20778 0.91754 0.89444 0.97169 1.46106 1.15747 1.28391 1.52122 1.18238 0.88617 0.79709 0.77728 1.90597 1.28947 1.76136 1.50852 1.20934 0.99908 1.08827 1.28632 0.91381 1.25719 0.95746 0.97748 0.94057 1.70038 1.22871 1.26149 1.20700 0.86322 0.81597 0.80297 0.78563 1.18779 1.20196 1.20175 1.22506 0.93597 0.92052 1.00726 1.21754 1.01289 0.95962 0.79807 0.89443 0.92187 0.91148 0.91164 0.92174 0.89431 0.91407 0.91414 0.90140 0.90193 0.88773 0.94273 0.88581 0.94471 0.90190 0.90778 0.91825 0.93721 0.93454 0.78883 0.92198 0.94287 0.88925 0.88363 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 8.37 37.16 0.31 -1.17 16 2 C 0.14 1.10 1.13 -90.62 -0.10 1.00 16 3 C -0.18 -1.42 8.37 37.16 0.31 -1.11 16 4 C -0.14 -0.80 8.85 37.16 0.33 -0.47 16 5 O -0.36 -3.64 8.57 -40.29 -0.35 -3.98 16 6 C 0.65 7.30 7.75 54.06 0.42 7.72 16 7 O -0.57 -7.35 11.33 -19.28 -0.22 -7.56 16 8 N -0.60 -5.84 3.00 -178.00 -0.53 -6.37 16 9 C 0.12 0.99 6.64 -3.36 -0.02 0.97 16 10 C 0.04 0.33 5.48 -3.47 -0.02 0.31 16 11 N -0.54 -5.35 4.63 -234.06 -1.08 -6.44 16 12 C 0.06 0.67 4.96 -3.83 -0.02 0.66 16 13 C -0.12 -1.62 5.26 -26.73 -0.14 -1.77 16 14 C 0.13 2.50 5.67 -4.04 -0.02 2.47 16 15 N -0.77 -17.05 5.55 -61.72 -0.34 -17.40 16 16 C 0.55 15.87 7.75 -12.99 -0.10 15.77 16 17 O -0.58 -19.09 15.02 5.19 0.08 -19.01 16 18 C -0.55 -15.50 9.54 -35.63 -0.34 -15.84 16 19 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 20 C 0.09 2.44 5.50 -17.36 -0.10 2.34 16 21 N -0.77 -23.22 11.83 55.55 0.66 -22.56 16 22 Si 0.91 20.15 29.56 -169.99 -5.02 15.12 16 23 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 26 C 0.04 0.35 5.62 -3.72 -0.02 0.33 16 27 C 0.13 1.17 6.59 -3.63 -0.02 1.14 16 28 H 0.09 0.91 5.88 -51.93 -0.31 0.60 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.88 5.88 -51.93 -0.31 0.58 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.74 6.98 -51.93 -0.36 0.38 16 39 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.10 0.86 6.16 -51.93 -0.32 0.54 16 41 H 0.04 0.44 8.12 -51.93 -0.42 0.01 16 42 H 0.08 0.89 7.97 -51.93 -0.41 0.47 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 0.79 6.40 -51.93 -0.33 0.46 16 45 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.38 7.33 8.45 -40.82 -0.35 6.99 16 48 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 49 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.09 0.71 7.99 -51.93 -0.41 0.30 16 51 H 0.10 0.89 7.06 -51.93 -0.37 0.52 16 52 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 409.33 15.07 6.17 6.17 Total: -1.00 -35.95 409.33 -9.24 -45.19 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -9.05 Total: 4.49 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: 0.46 Total: 12.36 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -1.30 Total: -52.77 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.49 Total: -30.56 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.95 -9.24 -45.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131313165.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.283 kcal (2) G-P(sol) polarization free energy of solvation -35.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds