Wall clock time and date at job start Wed Apr 1 2020 00:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.45202 * 109.46867 * 240.00586 * 2 1 3 6 6 C 1.34628 * 117.00407 * 59.99955 * 5 2 1 7 7 O 1.21513 * 120.00136 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00286 * 179.97438 * 6 5 2 9 9 C 1.47082 * 120.87717 * 359.72134 * 8 6 5 10 10 C 1.53697 * 108.27530 * 128.75735 * 9 8 6 11 11 N 1.46894 * 109.25909 * 54.07937 * 10 9 8 12 12 C 1.46904 * 111.00020 * 172.60614 * 11 10 9 13 13 C 1.52993 * 109.47103 * 294.30449 * 12 11 10 14 14 C 1.53003 * 109.47052 * 180.02562 * 13 12 11 15 15 N 1.46497 * 109.47018 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00020 * 180.02562 * 15 14 13 17 17 O 1.21696 * 119.99834 * 359.97438 * 16 15 14 18 18 C 1.46377 * 120.00281 * 179.97438 * 16 15 14 19 19 H 1.07994 * 119.99807 * 359.97438 * 18 16 15 20 20 C 1.40055 * 120.00060 * 179.97438 * 18 16 15 21 21 N 1.30675 * 119.99869 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 119.99779 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47294 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47026 * 120.00381 * 22 20 18 25 25 H 1.48504 * 109.46510 * 239.99950 * 22 20 18 26 26 C 1.46896 * 111.26864 * 296.75870 * 11 10 9 27 27 C 1.47073 * 120.88371 * 179.97438 * 8 6 5 28 28 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 31 31 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 32 32 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 34 34 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 35 35 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 37 37 H 1.09007 * 109.62440 * 248.52448 * 9 8 6 38 38 H 1.08996 * 109.63024 * 9.10279 * 9 8 6 39 39 H 1.09002 * 109.64179 * 294.07508 * 10 9 8 40 40 H 1.08997 * 109.41831 * 173.94410 * 10 9 8 41 41 H 1.08996 * 109.46951 * 54.30234 * 12 11 10 42 42 H 1.09001 * 109.46790 * 174.29797 * 12 11 10 43 43 H 1.09004 * 109.47297 * 299.99917 * 13 12 11 44 44 H 1.08996 * 109.47537 * 59.99591 * 13 12 11 45 45 H 1.08996 * 109.46900 * 299.99723 * 14 13 12 46 46 H 1.08994 * 109.47229 * 59.99912 * 14 13 12 47 47 H 0.97000 * 120.00007 * 359.97438 * 15 14 13 48 48 H 0.96997 * 119.99455 * 180.02562 * 21 20 18 49 49 H 1.09002 * 109.49595 * 303.14168 * 26 11 10 50 50 H 1.09003 * 109.51717 * 183.08136 * 26 11 10 51 51 H 1.09006 * 109.63246 * 350.89817 * 27 8 6 52 52 H 1.08999 * 109.63139 * 111.47706 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1857 6 6 1.6523 -0.1727 -2.3772 7 8 0.9509 0.8184 -2.4252 8 7 2.0681 -0.7598 -3.5170 9 6 2.9224 -1.9565 -3.4815 10 6 2.2872 -3.0291 -4.3806 11 7 2.0610 -2.4675 -5.7190 12 6 1.6183 -3.5069 -6.6580 13 6 2.7457 -4.5200 -6.8660 14 6 2.2848 -5.6022 -7.8445 15 7 3.3646 -6.5720 -8.0441 16 6 3.1844 -7.6202 -8.8718 17 8 2.1246 -7.7613 -9.4531 18 6 4.2634 -8.5889 -9.0717 19 1 5.2041 -8.4634 -8.5561 20 6 4.0760 -9.6785 -9.9314 21 7 2.9376 -9.8305 -10.5548 22 14 5.4528 -10.9151 -10.1859 23 1 6.6299 -10.5198 -9.3715 24 1 4.9909 -12.2630 -9.7678 25 1 5.8321 -10.9450 -11.6214 26 6 1.1028 -1.3550 -5.6750 27 6 1.6840 -0.2176 -4.8291 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 -1.7490 1.2492 35 1 3.1301 -0.7209 1.2493 36 1 1.6767 -0.2075 2.1392 37 1 3.9173 -1.7071 -3.8507 38 1 2.9907 -2.3275 -2.4589 39 1 1.3360 -3.3480 -3.9544 40 1 2.9586 -3.8846 -4.4538 41 1 0.7437 -4.0149 -6.2518 42 1 1.3612 -3.0482 -7.6128 43 1 3.6204 -4.0120 -7.2722 44 1 3.0028 -4.9786 -5.9112 45 1 1.4101 -6.1102 -7.4387 46 1 2.0282 -5.1432 -8.7992 47 1 4.2094 -6.4592 -7.5810 48 1 2.8077 -10.5854 -11.1500 49 1 0.1681 -1.6972 -5.2309 50 1 0.9147 -0.9962 -6.6870 51 1 0.9331 0.5616 -4.6979 52 1 2.5619 0.1959 -5.3256 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131313165.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:34 Heat of formation + Delta-G solvation = -142.830743 kcal Electronic energy + Delta-G solvation = -29929.371528 eV Core-core repulsion = 25734.789753 eV Total energy + Delta-G solvation = -4194.581775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.95831 -40.13161 -39.37392 -38.08404 -36.59495 -35.45627 -34.80342 -34.44011 -32.41018 -31.92127 -29.08367 -28.36481 -28.29117 -27.92139 -25.32747 -24.90870 -23.61465 -22.10752 -21.72783 -21.47991 -20.21376 -19.12727 -19.00060 -17.75687 -17.41917 -17.31780 -16.79807 -16.63311 -16.22406 -16.00273 -15.83055 -15.69437 -15.54308 -15.40372 -15.25112 -14.80372 -14.46381 -14.30660 -14.24580 -13.64712 -13.29113 -13.25713 -13.09927 -13.00155 -12.93408 -12.86582 -12.80746 -12.73393 -12.64246 -12.56210 -12.47306 -12.40560 -12.23782 -12.15456 -12.04137 -11.93932 -11.52004 -11.39488 -11.07112 -10.93771 -9.96492 -9.85489 -9.46347 -9.34489 -8.28355 -6.84531 1.08903 1.41663 1.41816 1.60039 1.70979 2.25841 2.48246 2.66789 2.81831 3.24441 3.63182 3.74336 3.78864 3.80920 3.89772 3.93579 3.95502 4.11673 4.21090 4.23748 4.29313 4.41209 4.43906 4.54220 4.60577 4.61692 4.67017 4.71104 4.75580 4.76638 4.80620 4.83177 4.85102 4.88212 4.90079 5.01516 5.11557 5.23009 5.27158 5.27671 5.29942 5.33589 5.38972 5.45766 5.89474 5.92289 6.00571 6.27028 6.28537 6.30659 6.87958 7.22665 7.58070 8.50676 8.68717 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024109 B = 0.001625 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.091771 B =17228.865622 C =17862.214511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.124 3.876 3 C -0.178 4.178 4 C -0.136 4.136 5 O -0.366 6.366 6 C 0.648 3.352 7 O -0.594 6.594 8 N -0.599 5.599 9 C 0.121 3.879 10 C 0.037 3.963 11 N -0.536 5.536 12 C 0.066 3.934 13 C -0.103 4.103 14 C 0.136 3.864 15 N -0.755 5.755 16 C 0.534 3.466 17 O -0.636 6.636 18 C -0.573 4.573 19 H 0.090 0.910 20 C 0.026 3.974 21 N -0.824 5.824 22 Si 1.000 3.000 23 H -0.245 1.245 24 H -0.269 1.269 25 H -0.269 1.269 26 C 0.044 3.956 27 C 0.136 3.864 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.030 0.970 40 H 0.103 0.897 41 H 0.031 0.969 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.027 0.973 46 H 0.031 0.969 47 H 0.397 0.603 48 H 0.274 0.726 49 H 0.029 0.971 50 H 0.106 0.894 51 H 0.093 0.907 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.151 21.512 23.137 31.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.088 3.912 3 C -0.235 4.235 4 C -0.193 4.193 5 O -0.281 6.281 6 C 0.404 3.596 7 O -0.486 6.486 8 N -0.339 5.339 9 C -0.001 4.001 10 C -0.092 4.092 11 N -0.261 5.261 12 C -0.062 4.062 13 C -0.141 4.141 14 C 0.010 3.990 15 N -0.409 5.409 16 C 0.338 3.662 17 O -0.523 6.523 18 C -0.610 4.610 19 H 0.108 0.892 20 C -0.188 4.188 21 N -0.453 5.453 22 Si 0.819 3.181 23 H -0.168 1.168 24 H -0.194 1.194 25 H -0.194 1.194 26 C -0.085 4.085 27 C 0.015 3.985 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.048 0.952 40 H 0.121 0.879 41 H 0.050 0.950 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.045 0.955 46 H 0.049 0.951 47 H 0.231 0.769 48 H 0.084 0.916 49 H 0.048 0.952 50 H 0.124 0.876 51 H 0.111 0.889 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.480 21.851 22.536 31.394 hybrid contribution -0.482 -0.850 -0.049 0.978 sum -0.001 21.002 22.487 30.769 Atomic orbital electron populations 1.22464 0.94199 1.02693 1.04247 1.22410 0.94420 0.92732 0.81643 1.22451 1.01632 0.95143 1.04251 1.21879 1.02510 1.01120 0.93767 1.86300 1.71487 1.56522 1.13778 1.18150 0.78521 0.81270 0.81679 1.90874 1.42574 1.28009 1.87125 1.47202 1.52646 1.30552 1.03542 1.22007 0.93824 0.83140 1.01118 1.22684 1.00346 0.97803 0.88344 1.61937 1.46247 1.09634 1.08277 1.21916 0.95637 0.91965 0.96699 1.21580 0.99295 0.94434 0.98812 1.20882 0.90396 0.89839 0.97844 1.45778 1.17248 1.27408 1.50512 1.18669 0.88181 0.81181 0.78156 1.90550 1.30808 1.77781 1.53189 1.21496 1.00696 1.09449 1.29368 0.89223 1.27015 0.98813 1.00015 0.92991 1.70205 1.25953 1.27466 1.21702 0.84948 0.77644 0.76646 0.78889 1.16803 1.19417 1.19415 1.22514 0.92873 0.91611 1.01470 1.21768 1.01571 0.95734 0.79472 0.92046 0.92351 0.89123 0.89176 0.91917 0.91996 0.91410 0.91067 0.88048 0.89241 0.88118 0.95192 0.87931 0.95033 0.89893 0.89934 0.90501 0.95457 0.95070 0.76938 0.91611 0.95230 0.87579 0.88899 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 8.37 71.98 0.60 -2.18 16 2 C 0.12 1.89 1.13 -10.79 -0.01 1.88 16 3 C -0.18 -2.61 8.37 71.98 0.60 -2.01 16 4 C -0.14 -1.27 8.85 71.98 0.64 -0.63 16 5 O -0.37 -7.11 8.57 -55.38 -0.47 -7.59 16 6 C 0.65 14.34 7.75 129.79 1.01 15.35 16 7 O -0.59 -15.58 11.33 19.80 0.22 -15.35 16 8 N -0.60 -11.23 3.00 -947.47 -2.85 -14.07 16 9 C 0.12 1.86 6.64 86.50 0.57 2.43 16 10 C 0.04 0.62 5.48 86.54 0.47 1.09 16 11 N -0.54 -9.82 4.63 -894.42 -4.14 -13.96 16 12 C 0.07 1.41 4.96 86.30 0.43 1.84 16 13 C -0.10 -2.56 5.26 30.59 0.16 -2.39 16 14 C 0.14 5.07 5.67 86.38 0.49 5.56 16 15 N -0.75 -33.50 5.55 -467.41 -2.59 -36.09 16 16 C 0.53 31.24 7.75 86.36 0.67 31.91 16 17 O -0.64 -43.26 15.02 -4.33 -0.07 -43.32 16 18 C -0.57 -32.53 9.54 24.83 0.24 -32.29 16 19 H 0.09 4.52 7.85 -2.91 -0.02 4.49 16 20 C 0.03 1.48 5.50 85.31 0.47 1.95 16 21 N -0.82 -50.82 11.83 21.84 0.26 -50.56 16 22 Si 1.00 40.79 29.56 68.60 2.03 42.81 16 23 H -0.25 -9.16 7.11 99.48 0.71 -8.46 16 24 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 25 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 26 C 0.04 0.73 5.62 86.37 0.48 1.21 16 27 C 0.14 2.26 6.59 86.34 0.57 2.83 16 28 H 0.06 1.30 5.88 -2.39 -0.01 1.29 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 1.26 5.88 -2.39 -0.01 1.25 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.10 1.42 6.98 -2.39 -0.02 1.41 16 39 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.10 1.60 6.16 -2.39 -0.01 1.59 16 41 H 0.03 0.72 8.12 -2.39 -0.02 0.70 16 42 H 0.08 1.75 7.97 -2.39 -0.02 1.73 16 43 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.08 1.73 6.40 -2.39 -0.02 1.72 16 45 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.40 14.82 8.45 -92.71 -0.78 14.04 16 48 H 0.27 15.24 8.29 -92.71 -0.77 14.47 16 49 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.11 1.48 7.99 -2.39 -0.02 1.46 16 51 H 0.09 1.67 7.06 -2.38 -0.02 1.66 16 52 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -80.67 409.33 -0.09 -80.76 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 0.12 Total: 30.82 kcal Atomic # 6 Polarization: 19.16 SS G_CDS: 7.39 Total: 26.55 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -9.32 Total: -114.69 kcal Atomic # 8 Polarization: -65.94 SS G_CDS: -0.32 Total: -66.26 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Total: -80.67 -0.09 -80.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131313165.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.068 kcal (2) G-P(sol) polarization free energy of solvation -80.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds