Wall clock time and date at job start Wed Apr 1 2020 00:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47053 * 2 1 4 4 C 1.53000 * 109.47178 * 120.00091 * 2 1 3 5 5 O 1.45201 * 109.46732 * 240.00145 * 2 1 3 6 6 C 1.34634 * 117.00205 * 60.00159 * 5 2 1 7 7 O 1.21514 * 120.00196 * 359.97438 * 6 5 2 8 8 N 1.34776 * 120.00136 * 179.97438 * 6 5 2 9 9 C 1.46969 * 120.59355 * 359.71992 * 8 6 5 10 10 C 1.53807 * 108.39940 * 124.75551 * 9 8 6 11 11 N 1.46964 * 108.57805 * 49.64270 * 10 9 8 12 12 C 1.34775 * 120.59894 * 124.62592 * 11 10 9 13 13 O 1.21586 * 120.00111 * 174.95473 * 12 11 10 14 14 N 1.34783 * 119.99697 * 354.94814 * 12 11 10 15 15 C 1.46497 * 119.99877 * 185.06329 * 14 12 11 16 16 C 1.52999 * 109.47132 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.47013 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.47041 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99727 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00035 * 179.97438 * 18 17 16 21 21 N 1.31518 * 120.00179 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99845 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47144 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47156 * 120.00412 * 22 20 18 25 25 H 1.48507 * 109.47236 * 240.00210 * 22 20 18 26 26 C 1.46972 * 118.81179 * 304.64167 * 11 10 9 27 27 C 1.46966 * 120.59638 * 179.97438 * 8 6 5 28 28 H 1.09003 * 109.47466 * 59.99687 * 1 2 3 29 29 H 1.09001 * 109.47533 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47062 * 300.00324 * 1 2 3 31 31 H 1.08996 * 109.47705 * 60.00369 * 3 2 1 32 32 H 1.09004 * 109.46985 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47341 * 299.99717 * 3 2 1 34 34 H 1.09001 * 109.46809 * 59.99654 * 4 2 1 35 35 H 1.08994 * 109.46945 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.46785 * 299.99754 * 4 2 1 37 37 H 1.08999 * 109.60904 * 244.54171 * 9 8 6 38 38 H 1.08999 * 109.60880 * 5.04775 * 9 8 6 39 39 H 1.09000 * 109.74693 * 289.84943 * 10 9 8 40 40 H 1.09006 * 109.67345 * 169.38649 * 10 9 8 41 41 H 0.96995 * 120.00115 * 5.07049 * 14 12 11 42 42 H 1.09003 * 109.47561 * 300.00480 * 15 14 12 43 43 H 1.09010 * 109.47019 * 60.00385 * 15 14 12 44 44 H 1.08998 * 109.47034 * 300.00037 * 16 15 14 45 45 H 1.08993 * 109.47210 * 60.00240 * 16 15 14 46 46 H 1.08998 * 109.46886 * 299.99681 * 17 16 15 47 47 H 1.08993 * 109.47300 * 59.99849 * 17 16 15 48 48 H 0.96998 * 120.00161 * 179.97438 * 21 20 18 49 49 H 1.09005 * 109.60743 * 295.48802 * 26 11 10 50 50 H 1.08993 * 109.75504 * 175.05554 * 26 11 10 51 51 H 1.08995 * 109.60670 * 354.95005 * 27 8 6 52 52 H 1.08998 * 109.60634 * 115.28788 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 2.0139 -0.6845 -1.1856 6 6 1.6521 -0.1728 -2.3773 7 8 0.9508 0.8183 -2.4253 8 7 2.0679 -0.7600 -3.5169 9 6 2.9215 -1.9556 -3.4742 10 6 2.2400 -3.0681 -4.2888 11 7 1.8529 -2.5207 -5.5966 12 6 2.2694 -3.1073 -6.7363 13 8 1.8691 -2.7016 -7.8103 14 7 3.1296 -4.1436 -6.6854 15 6 3.6686 -4.7097 -7.9244 16 6 4.6124 -5.8661 -7.5886 17 6 5.1758 -6.4569 -8.8826 18 6 6.1060 -7.5955 -8.5518 19 1 6.2784 -7.8700 -7.5215 20 6 6.7368 -8.2868 -9.5642 21 7 6.5272 -7.9522 -10.8188 22 14 7.8892 -9.6985 -9.1541 23 1 7.9531 -9.8734 -7.6808 24 1 7.3840 -10.9474 -9.7789 25 1 9.2463 -9.3976 -9.6767 26 6 1.0039 -1.3218 -5.6395 27 6 1.6803 -0.2129 -4.8248 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 -1.7489 1.2492 35 1 3.1299 -0.7216 1.2490 36 1 1.6767 -0.2074 2.1392 37 1 3.8951 -1.7256 -3.9069 38 1 3.0451 -2.2800 -2.4409 39 1 1.3526 -3.4193 -3.7621 40 1 2.9336 -3.8970 -4.4300 41 1 3.3918 -4.5147 -5.8284 42 1 2.8494 -5.0776 -8.5424 43 1 4.2160 -3.9395 -8.4678 44 1 5.4316 -5.4986 -6.9706 45 1 4.0647 -6.6362 -7.0455 46 1 4.3568 -6.8243 -9.5009 47 1 5.7236 -5.6867 -9.4254 48 1 6.9713 -8.4383 -11.5311 49 1 0.0286 -1.5487 -5.2088 50 1 0.8808 -0.9943 -6.6717 51 1 0.9842 0.6138 -4.6837 52 1 2.5671 0.1413 -5.3504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170887220.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:22 Heat of formation + Delta-G solvation = -107.165395 kcal Electronic energy + Delta-G solvation = -30298.670399 eV Core-core repulsion = 26105.635190 eV Total energy + Delta-G solvation = -4193.035210 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31878 -40.29406 -38.37239 -36.81039 -35.50494 -34.71992 -33.96929 -33.30115 -31.86928 -30.94468 -28.22176 -27.81647 -27.77307 -26.53491 -24.44859 -23.75878 -22.94870 -21.61252 -20.66380 -20.21873 -19.30812 -18.66275 -17.36300 -17.08379 -16.62682 -16.55312 -16.09744 -15.82390 -15.60364 -15.00706 -14.87431 -14.61839 -14.61206 -14.35607 -14.18743 -14.02921 -13.83266 -13.36810 -13.01991 -12.81506 -12.58365 -12.41023 -12.30817 -12.28658 -12.01732 -11.91562 -11.84853 -11.76620 -11.74949 -11.66462 -11.59868 -10.93628 -10.76050 -10.73015 -10.58192 -10.35449 -10.12292 -9.88698 -9.62450 -9.46455 -9.12601 -8.91129 -8.48741 -8.38735 -6.03112 -4.06240 1.68059 2.46249 2.58132 3.24213 3.28799 3.36420 3.37954 3.39601 3.85606 4.29334 4.34469 4.36324 4.42944 4.48641 4.52199 4.65213 4.74666 4.93978 5.00855 5.06114 5.13205 5.16673 5.27628 5.28237 5.32767 5.36724 5.38314 5.42052 5.44741 5.58336 5.60062 5.66286 5.78776 5.87257 5.88448 6.00889 6.07009 6.15592 6.22416 6.48618 6.59649 6.71715 6.91099 6.97890 6.99945 7.62624 7.75029 7.95189 7.95701 7.97749 8.36399 8.64029 9.00642 9.58044 11.08145 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018575 B = 0.001826 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.009241 B =15329.287266 C =16476.833318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.183 4.183 4 C -0.141 4.141 5 O -0.362 6.362 6 C 0.655 3.345 7 O -0.568 6.568 8 N -0.595 5.595 9 C 0.097 3.903 10 C 0.098 3.902 11 N -0.636 5.636 12 C 0.705 3.295 13 O -0.587 6.587 14 N -0.741 5.741 15 C 0.134 3.866 16 C -0.120 4.120 17 C 0.023 3.977 18 C -0.522 4.522 19 H 0.056 0.944 20 C 0.056 3.944 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.118 3.882 27 C 0.113 3.887 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.392 0.608 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.020 0.980 47 H 0.019 0.981 48 H 0.261 0.739 49 H 0.069 0.931 50 H 0.110 0.890 51 H 0.108 0.892 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.319 17.362 24.833 32.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.240 4.240 4 C -0.198 4.198 5 O -0.277 6.277 6 C 0.410 3.590 7 O -0.458 6.458 8 N -0.335 5.335 9 C -0.026 4.026 10 C -0.027 4.027 11 N -0.375 5.375 12 C 0.407 3.593 13 O -0.465 6.465 14 N -0.397 5.397 15 C 0.011 3.989 16 C -0.158 4.158 17 C -0.014 4.014 18 C -0.560 4.560 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.007 4.007 27 C -0.009 4.009 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.122 0.878 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.228 0.772 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.038 0.962 47 H 0.038 0.962 48 H 0.070 0.930 49 H 0.087 0.913 50 H 0.128 0.872 51 H 0.126 0.874 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.764 17.919 23.894 32.100 hybrid contribution 0.847 -1.048 0.644 1.494 sum -10.917 16.871 24.538 31.716 Atomic orbital electron populations 1.22512 0.93929 1.02967 1.04614 1.22092 0.94403 0.92229 0.81364 1.22513 1.01589 0.95332 1.04610 1.21864 1.02322 1.01172 0.94456 1.86286 1.71491 1.56283 1.13636 1.17950 0.78594 0.81338 0.81095 1.90894 1.41382 1.26828 1.86671 1.46881 1.52880 1.30104 1.03682 1.22248 0.93592 0.84470 1.02325 1.22084 1.00449 0.95953 0.84166 1.47211 1.55090 1.30682 1.04493 1.15905 0.79466 0.80390 0.83556 1.90918 1.61146 1.66956 1.27479 1.45569 1.48286 1.34932 1.10934 1.21543 0.97058 0.96106 0.84237 1.21889 0.96924 0.95027 1.01971 1.19035 0.95920 0.95626 0.90850 1.21235 1.26324 1.15626 0.92817 0.92602 1.25034 0.96908 0.97511 0.95069 1.69976 1.43390 1.41003 0.98831 0.86529 0.80700 0.82266 0.78431 1.19777 1.21016 1.21013 1.21822 0.92630 0.83725 1.02488 1.22126 1.01393 0.96946 0.80465 0.89414 0.92142 0.91131 0.91119 0.92157 0.89422 0.91390 0.91402 0.90111 0.90270 0.87766 0.90670 0.88853 0.77172 0.91816 0.91940 0.92787 0.92773 0.96205 0.96224 0.92978 0.91257 0.87183 0.87381 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 8.37 37.16 0.31 -1.01 16 2 C 0.14 1.00 1.13 -90.62 -0.10 0.89 16 3 C -0.18 -1.34 8.37 37.15 0.31 -1.03 16 4 C -0.14 -0.71 8.85 37.16 0.33 -0.38 16 5 O -0.36 -3.25 8.52 -40.31 -0.34 -3.60 16 6 C 0.66 6.67 7.74 54.05 0.42 7.09 16 7 O -0.57 -6.82 11.29 -19.28 -0.22 -7.04 16 8 N -0.59 -5.27 2.94 -178.03 -0.52 -5.80 16 9 C 0.10 0.69 6.64 -3.37 -0.02 0.67 16 10 C 0.10 0.75 6.61 -3.37 -0.02 0.73 16 11 N -0.64 -6.91 2.95 -177.96 -0.52 -7.43 16 12 C 0.71 10.46 8.29 -86.91 -0.72 9.74 16 13 O -0.59 -11.13 15.78 5.29 0.08 -11.05 16 14 N -0.74 -10.38 5.47 -65.22 -0.36 -10.74 16 15 C 0.13 2.31 5.68 -4.04 -0.02 2.29 16 16 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 17 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 18 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 19 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 20 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 21 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 22 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 26 C 0.12 1.13 6.58 -3.61 -0.02 1.11 16 27 C 0.11 0.97 6.59 -3.62 -0.02 0.95 16 28 H 0.09 0.83 5.88 -51.93 -0.31 0.53 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.84 5.88 -51.92 -0.31 0.53 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.63 6.91 -51.93 -0.36 0.27 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.60 5.55 -51.93 -0.29 0.32 16 41 H 0.39 4.35 5.92 -40.82 -0.24 4.11 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.06 1.15 8.14 -51.92 -0.42 0.72 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.11 1.19 7.03 -51.93 -0.36 0.83 16 51 H 0.11 0.93 6.99 -51.93 -0.36 0.57 16 52 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 409.37 15.07 6.17 6.17 Total: -1.00 -34.22 409.37 -9.21 -43.44 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.96 Total: -0.24 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -0.26 Total: 5.89 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.67 Total: -49.82 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.48 Total: -21.69 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.22 -9.21 -43.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170887220.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.730 kcal (2) G-P(sol) polarization free energy of solvation -34.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds