Wall clock time and date at job start Wed Apr 1 2020 00:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47053 * 2 1 4 4 C 1.53000 * 109.47178 * 120.00091 * 2 1 3 5 5 O 1.45201 * 109.46732 * 240.00145 * 2 1 3 6 6 C 1.34634 * 117.00205 * 60.00159 * 5 2 1 7 7 O 1.21514 * 120.00196 * 359.97438 * 6 5 2 8 8 N 1.34776 * 120.00136 * 179.97438 * 6 5 2 9 9 C 1.46969 * 120.59355 * 359.71992 * 8 6 5 10 10 C 1.53807 * 108.39940 * 124.75551 * 9 8 6 11 11 N 1.46964 * 108.57805 * 49.64270 * 10 9 8 12 12 C 1.34775 * 120.59894 * 124.62592 * 11 10 9 13 13 O 1.21586 * 120.00111 * 174.95473 * 12 11 10 14 14 N 1.34783 * 119.99697 * 354.94814 * 12 11 10 15 15 C 1.46497 * 119.99877 * 185.06329 * 14 12 11 16 16 C 1.52999 * 109.47132 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.47013 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.47041 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99727 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00035 * 179.97438 * 18 17 16 21 21 N 1.31518 * 120.00179 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99845 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47144 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47156 * 120.00412 * 22 20 18 25 25 H 1.48507 * 109.47236 * 240.00210 * 22 20 18 26 26 C 1.46972 * 118.81179 * 304.64167 * 11 10 9 27 27 C 1.46966 * 120.59638 * 179.97438 * 8 6 5 28 28 H 1.09003 * 109.47466 * 59.99687 * 1 2 3 29 29 H 1.09001 * 109.47533 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47062 * 300.00324 * 1 2 3 31 31 H 1.08996 * 109.47705 * 60.00369 * 3 2 1 32 32 H 1.09004 * 109.46985 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47341 * 299.99717 * 3 2 1 34 34 H 1.09001 * 109.46809 * 59.99654 * 4 2 1 35 35 H 1.08994 * 109.46945 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.46785 * 299.99754 * 4 2 1 37 37 H 1.08999 * 109.60904 * 244.54171 * 9 8 6 38 38 H 1.08999 * 109.60880 * 5.04775 * 9 8 6 39 39 H 1.09000 * 109.74693 * 289.84943 * 10 9 8 40 40 H 1.09006 * 109.67345 * 169.38649 * 10 9 8 41 41 H 0.96995 * 120.00115 * 5.07049 * 14 12 11 42 42 H 1.09003 * 109.47561 * 300.00480 * 15 14 12 43 43 H 1.09010 * 109.47019 * 60.00385 * 15 14 12 44 44 H 1.08998 * 109.47034 * 300.00037 * 16 15 14 45 45 H 1.08993 * 109.47210 * 60.00240 * 16 15 14 46 46 H 1.08998 * 109.46886 * 299.99681 * 17 16 15 47 47 H 1.08993 * 109.47300 * 59.99849 * 17 16 15 48 48 H 0.96998 * 120.00161 * 179.97438 * 21 20 18 49 49 H 1.09005 * 109.60743 * 295.48802 * 26 11 10 50 50 H 1.08993 * 109.75504 * 175.05554 * 26 11 10 51 51 H 1.08995 * 109.60670 * 354.95005 * 27 8 6 52 52 H 1.08998 * 109.60634 * 115.28788 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 2.0139 -0.6845 -1.1856 6 6 1.6521 -0.1728 -2.3773 7 8 0.9508 0.8183 -2.4253 8 7 2.0679 -0.7600 -3.5169 9 6 2.9215 -1.9556 -3.4742 10 6 2.2400 -3.0681 -4.2888 11 7 1.8529 -2.5207 -5.5966 12 6 2.2694 -3.1073 -6.7363 13 8 1.8691 -2.7016 -7.8103 14 7 3.1296 -4.1436 -6.6854 15 6 3.6686 -4.7097 -7.9244 16 6 4.6124 -5.8661 -7.5886 17 6 5.1758 -6.4569 -8.8826 18 6 6.1060 -7.5955 -8.5518 19 1 6.2784 -7.8700 -7.5215 20 6 6.7368 -8.2868 -9.5642 21 7 6.5272 -7.9522 -10.8188 22 14 7.8892 -9.6985 -9.1541 23 1 7.9531 -9.8734 -7.6808 24 1 7.3840 -10.9474 -9.7789 25 1 9.2463 -9.3976 -9.6767 26 6 1.0039 -1.3218 -5.6395 27 6 1.6803 -0.2129 -4.8248 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 -1.7489 1.2492 35 1 3.1299 -0.7216 1.2490 36 1 1.6767 -0.2074 2.1392 37 1 3.8951 -1.7256 -3.9069 38 1 3.0451 -2.2800 -2.4409 39 1 1.3526 -3.4193 -3.7621 40 1 2.9336 -3.8970 -4.4300 41 1 3.3918 -4.5147 -5.8284 42 1 2.8494 -5.0776 -8.5424 43 1 4.2160 -3.9395 -8.4678 44 1 5.4316 -5.4986 -6.9706 45 1 4.0647 -6.6362 -7.0455 46 1 4.3568 -6.8243 -9.5009 47 1 5.7236 -5.6867 -9.4254 48 1 6.9713 -8.4383 -11.5311 49 1 0.0286 -1.5487 -5.2088 50 1 0.8808 -0.9943 -6.6717 51 1 0.9842 0.6138 -4.6837 52 1 2.5671 0.1413 -5.3504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170887220.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:22 Heat of formation + Delta-G solvation = -128.901957 kcal Electronic energy + Delta-G solvation = -30299.612968 eV Core-core repulsion = 26105.635190 eV Total energy + Delta-G solvation = -4193.977778 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.06525 -41.30138 -39.19084 -37.63690 -36.96865 -35.53462 -35.23084 -34.58814 -33.10697 -32.20399 -29.28005 -28.33309 -28.25923 -28.10645 -25.44881 -24.77581 -24.20942 -22.45359 -22.28730 -21.07002 -20.20625 -19.59117 -18.54150 -18.13480 -17.80269 -17.34118 -17.29687 -16.94209 -16.48654 -16.27967 -15.93339 -15.60663 -15.54864 -15.42135 -15.23916 -14.94919 -14.47564 -14.45196 -14.26361 -13.72553 -13.63610 -13.46480 -13.27614 -13.08703 -12.97530 -12.83240 -12.76773 -12.71809 -12.55402 -12.48362 -12.46294 -12.41792 -12.29701 -12.22200 -11.65105 -11.59269 -11.37034 -11.26673 -11.10679 -11.06582 -10.54097 -10.51354 -10.08554 -9.38798 -8.17512 -6.28656 0.98919 1.43266 1.43490 1.56171 1.59145 1.70468 2.08135 2.43312 2.75914 2.86770 3.16521 3.69408 3.77010 3.78894 3.83299 3.97656 3.98723 4.09305 4.21167 4.23865 4.28016 4.35248 4.53073 4.59041 4.61131 4.63427 4.64774 4.75022 4.78866 4.80238 4.88567 4.89860 4.91774 4.98745 5.00101 5.13845 5.19571 5.27565 5.31002 5.37437 5.39113 5.47150 5.47837 5.56245 5.74165 5.82315 5.87182 6.23732 6.24768 6.88152 6.92424 7.21964 7.40882 7.49806 8.94710 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018575 B = 0.001826 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.009241 B =15329.287266 C =16476.833318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.126 3.874 3 C -0.180 4.180 4 C -0.136 4.136 5 O -0.362 6.362 6 C 0.652 3.348 7 O -0.591 6.591 8 N -0.595 5.595 9 C 0.100 3.900 10 C 0.096 3.904 11 N -0.628 5.628 12 C 0.703 3.297 13 O -0.634 6.634 14 N -0.729 5.729 15 C 0.149 3.851 16 C -0.100 4.100 17 C 0.022 3.978 18 C -0.538 4.538 19 H 0.068 0.932 20 C -0.005 4.005 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.257 1.257 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.120 3.880 27 C 0.121 3.879 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.410 0.590 42 H 0.045 0.955 43 H 0.048 0.952 44 H 0.070 0.930 45 H 0.068 0.932 46 H -0.009 1.009 47 H -0.007 1.007 48 H 0.262 0.738 49 H 0.078 0.922 50 H 0.095 0.905 51 H 0.107 0.893 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.678 16.530 28.199 34.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.090 3.910 3 C -0.237 4.237 4 C -0.193 4.193 5 O -0.277 6.277 6 C 0.407 3.593 7 O -0.482 6.482 8 N -0.336 5.336 9 C -0.023 4.023 10 C -0.027 4.027 11 N -0.365 5.365 12 C 0.404 3.596 13 O -0.515 6.515 14 N -0.387 5.387 15 C 0.025 3.975 16 C -0.138 4.138 17 C -0.016 4.016 18 C -0.576 4.576 19 H 0.086 0.914 20 C -0.203 4.203 21 N -0.576 5.576 22 Si 0.791 3.209 23 H -0.180 1.180 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.004 4.004 27 C -0.001 4.001 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.139 0.861 39 H 0.106 0.894 40 H 0.128 0.872 41 H 0.249 0.751 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.010 0.990 47 H 0.011 0.989 48 H 0.071 0.929 49 H 0.097 0.903 50 H 0.114 0.886 51 H 0.125 0.875 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.120 17.082 27.348 34.108 hybrid contribution 0.596 -0.725 -0.362 1.006 sum -10.525 16.357 26.986 33.265 Atomic orbital electron populations 1.22462 0.93997 1.02935 1.04207 1.22398 0.94525 0.92516 0.81607 1.22467 1.01577 0.95413 1.04213 1.21879 1.02455 1.01275 0.93673 1.86291 1.71431 1.56375 1.13595 1.18101 0.78392 0.81166 0.81633 1.90892 1.42397 1.27883 1.87057 1.46964 1.52809 1.30493 1.03297 1.22346 0.93209 0.83485 1.03225 1.22334 1.01510 0.96490 0.82386 1.47226 1.54277 1.30420 1.04616 1.16027 0.79312 0.80326 0.83906 1.90891 1.62742 1.68241 1.29660 1.45194 1.48064 1.34831 1.10569 1.21095 0.95987 0.95178 0.85289 1.21583 0.97624 0.95596 0.98967 1.18956 0.94670 0.94747 0.93187 1.21716 1.26373 1.16050 0.93420 0.91373 1.26028 0.98814 1.00532 0.94884 1.70122 1.44802 1.42598 1.00048 0.85371 0.78095 0.78398 0.78987 1.18045 1.20765 1.20713 1.21843 0.92999 0.83592 1.01963 1.22000 1.01318 0.96425 0.80382 0.91981 0.91924 0.89350 0.89297 0.92055 0.92010 0.91053 0.91179 0.88240 0.89910 0.86091 0.89393 0.87239 0.75111 0.93632 0.93378 0.91122 0.91337 0.99010 0.98892 0.92901 0.90342 0.88634 0.87464 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 8.37 71.98 0.60 -1.75 16 2 C 0.13 1.63 1.13 -10.80 -0.01 1.62 16 3 C -0.18 -2.41 8.37 71.98 0.60 -1.81 16 4 C -0.14 -0.99 8.85 71.98 0.64 -0.36 16 5 O -0.36 -5.91 8.52 -55.44 -0.47 -6.38 16 6 C 0.65 12.64 7.74 129.79 1.00 13.64 16 7 O -0.59 -14.18 11.29 19.80 0.22 -13.96 16 8 N -0.60 -9.72 2.94 -947.57 -2.79 -12.51 16 9 C 0.10 1.18 6.64 86.56 0.57 1.76 16 10 C 0.10 1.21 6.61 86.56 0.57 1.78 16 11 N -0.63 -12.80 2.95 -835.21 -2.46 -15.26 16 12 C 0.70 20.40 8.29 179.05 1.49 21.88 16 13 O -0.63 -24.47 15.78 -3.99 -0.06 -24.53 16 14 N -0.73 -19.42 5.47 -478.52 -2.62 -22.04 16 15 C 0.15 5.15 5.68 86.38 0.49 5.64 16 16 C -0.10 -3.69 5.27 30.59 0.16 -3.53 16 17 C 0.02 1.13 4.97 29.85 0.15 1.28 16 18 C -0.54 -29.44 9.11 25.60 0.23 -29.20 16 19 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 20 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 21 N -0.94 -56.74 13.29 21.45 0.28 -56.45 16 22 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 26 C 0.12 2.25 6.58 86.40 0.57 2.82 16 27 C 0.12 2.02 6.59 86.40 0.57 2.59 16 28 H 0.06 1.17 5.88 -2.39 -0.01 1.16 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 1.18 5.88 -2.38 -0.01 1.17 16 34 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.12 1.08 6.91 -2.39 -0.02 1.06 16 39 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.11 1.03 5.55 -2.38 -0.01 1.02 16 41 H 0.41 7.94 5.92 -92.71 -0.55 7.39 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 44 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 46 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 47 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 48 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 49 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 50 H 0.10 2.12 7.03 -2.39 -0.02 2.11 16 51 H 0.11 1.84 6.99 -2.39 -0.02 1.83 16 52 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -75.69 409.37 2.59 -73.10 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.36 Total: 16.23 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 8.10 Total: 16.53 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -7.58 Total: -106.26 kcal Atomic # 8 Polarization: -44.56 SS G_CDS: -0.31 Total: -44.88 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -75.69 2.59 -73.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170887220.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.805 kcal (2) G-P(sol) polarization free energy of solvation -75.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds