Wall clock time and date at job start Wed Apr 1 2020 00:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 119.99554 * 2 1 4 4 C 1.52995 * 109.47289 * 269.99508 * 3 2 1 5 5 H 1.09004 * 110.64245 * 303.31032 * 4 3 2 6 6 C 1.54604 * 110.72334 * 66.45422 * 4 3 2 7 7 C 1.53991 * 105.14050 * 140.49299 * 6 4 3 8 8 N 1.47905 * 107.05809 * 1.22852 * 7 6 4 9 9 C 1.46894 * 111.00295 * 214.15199 * 8 7 6 10 10 C 1.50695 * 109.47705 * 176.63867 * 9 8 7 11 11 O 1.21293 * 119.99598 * 6.13247 * 10 9 8 12 12 N 1.34770 * 120.00499 * 186.14160 * 10 9 8 13 13 C 1.37094 * 120.00231 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00226 * 359.97438 * 13 12 10 15 15 C 1.38957 * 120.00171 * 179.97438 * 13 12 10 16 16 N 1.31409 * 119.99740 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99892 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47073 * 270.00093 * 17 15 13 19 19 H 1.48496 * 109.47238 * 30.00697 * 17 15 13 20 20 H 1.48505 * 109.46622 * 150.00473 * 17 15 13 21 21 C 1.48535 * 105.82048 * 334.66782 * 8 7 6 22 22 C 1.34767 * 120.00326 * 179.97438 * 2 1 3 23 23 O 1.21514 * 120.00285 * 179.97438 * 22 2 1 24 24 O 1.34641 * 120.00298 * 0.02562 * 22 2 1 25 25 C 1.45195 * 117.00360 * 179.97438 * 24 22 2 26 26 C 1.52997 * 109.47293 * 59.99794 * 25 24 22 27 27 C 1.53001 * 109.47291 * 179.97438 * 25 24 22 28 28 C 1.53004 * 109.46994 * 299.99409 * 25 24 22 29 29 H 1.08998 * 109.46696 * 90.00371 * 1 2 3 30 30 H 1.08996 * 109.46776 * 209.99790 * 1 2 3 31 31 H 1.08994 * 109.47661 * 330.00112 * 1 2 3 32 32 H 1.09004 * 109.46842 * 149.99600 * 3 2 1 33 33 H 1.08995 * 109.47522 * 29.99869 * 3 2 1 34 34 H 1.08996 * 110.30520 * 21.58122 * 6 4 3 35 35 H 1.08997 * 110.30761 * 259.41541 * 6 4 3 36 36 H 1.08993 * 109.92317 * 241.87814 * 7 6 4 37 37 H 1.09005 * 110.08057 * 120.66782 * 7 6 4 38 38 H 1.09010 * 109.46872 * 56.63525 * 9 8 7 39 39 H 1.09001 * 109.47040 * 296.64207 * 9 8 7 40 40 H 0.97003 * 120.00014 * 359.97438 * 12 10 9 41 41 H 0.97000 * 119.99605 * 180.02562 * 16 15 13 42 42 H 1.08996 * 110.66795 * 157.63752 * 21 8 7 43 43 H 1.08995 * 110.66937 * 280.77474 * 21 8 7 44 44 H 1.08993 * 109.47514 * 59.99897 * 26 25 24 45 45 H 1.08996 * 109.47225 * 180.02562 * 26 25 24 46 46 H 1.09003 * 109.47137 * 299.99603 * 26 25 24 47 47 H 1.09002 * 109.46794 * 59.99624 * 27 25 24 48 48 H 1.08996 * 109.47114 * 179.97438 * 27 25 24 49 49 H 1.08995 * 109.47128 * 300.00229 * 27 25 24 50 50 H 1.09000 * 109.46687 * 60.00639 * 28 25 24 51 51 H 1.08999 * 109.46722 * 179.97438 * 28 25 24 52 52 H 1.08993 * 109.47465 * 300.00397 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 1 2.9909 0.9378 -1.9914 6 6 1.1234 2.0594 -2.1509 7 6 1.4365 3.3030 -3.0035 8 7 2.8692 3.6138 -2.8076 9 6 3.1035 5.0634 -2.8457 10 6 4.5562 5.3453 -2.5612 11 8 5.3430 4.4280 -2.4578 12 7 4.9812 6.6166 -2.4213 13 6 6.3028 6.8730 -2.1619 14 1 7.0032 6.0562 -2.0692 15 6 6.7411 8.1837 -2.0182 16 7 5.8887 9.1776 -2.1304 17 14 8.5417 8.5329 -1.6640 18 1 8.7609 8.5610 -0.1956 19 1 9.3809 7.4680 -2.2696 20 1 8.9145 9.8476 -2.2453 21 6 3.2279 3.0513 -1.4805 22 6 2.1389 -1.1671 0.0005 23 8 3.3541 -1.1671 0.0001 24 8 1.4659 -2.3332 0.0005 25 6 2.2567 -3.5508 0.0005 26 6 3.1394 -3.5857 1.2497 27 6 1.3248 -4.7643 0.0012 28 6 3.1393 -3.5857 -1.2488 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 3.1499 1.1385 0.5139 33 1 1.6084 2.0284 0.5138 34 1 0.3520 2.2892 -1.4159 35 1 0.8062 1.2339 -2.7880 36 1 0.8259 4.1432 -2.6731 37 1 1.2424 3.0940 -4.0555 38 1 2.4843 5.5514 -2.0928 39 1 2.8454 5.4474 -3.8327 40 1 4.3521 7.3502 -2.5041 41 1 6.1948 10.0926 -2.0305 42 1 4.3017 2.8767 -1.4141 43 1 2.8941 3.7115 -0.6799 44 1 2.5107 -3.5609 2.1397 45 1 3.7334 -4.4996 1.2495 46 1 3.8034 -2.7213 1.2496 47 1 0.6956 -4.7396 -0.8886 48 1 1.9185 -5.6784 0.0007 49 1 0.6963 -4.7392 0.8913 50 1 3.8032 -2.7213 -1.2488 51 1 3.7333 -4.4997 -1.2486 52 1 2.5104 -3.5609 -2.1387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171743239.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:41 Heat of formation + Delta-G solvation = -107.761839 kcal Electronic energy + Delta-G solvation = -30816.032589 eV Core-core repulsion = 26622.971515 eV Total energy + Delta-G solvation = -4193.061074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.99759 -39.35879 -38.07494 -37.19533 -35.67167 -34.20913 -33.87304 -32.17977 -31.15469 -29.59301 -27.69829 -27.59459 -27.31538 -26.88213 -25.39597 -24.00955 -21.98700 -20.97398 -20.25423 -19.44823 -19.12422 -17.91334 -17.82080 -16.89094 -16.49845 -16.30646 -15.54311 -15.30555 -15.22786 -14.73578 -14.60439 -14.42289 -14.18327 -13.87297 -13.65281 -13.61023 -13.41200 -12.92510 -12.85992 -12.70415 -12.52566 -12.43101 -12.22469 -12.13760 -12.03424 -11.90696 -11.78080 -11.63668 -11.50931 -11.46921 -11.16743 -11.04743 -10.89963 -10.65684 -10.55702 -10.46876 -10.35990 -10.19325 -10.09974 -9.45775 -8.91461 -8.37607 -7.98096 -7.88158 -6.39501 -3.79949 1.97075 2.72197 3.19676 3.28199 3.34652 3.63042 3.93510 4.09836 4.30084 4.46461 4.50474 4.65202 4.67519 4.77750 4.79213 4.91335 5.13751 5.16654 5.19228 5.20345 5.27492 5.27949 5.31466 5.39052 5.42783 5.45171 5.50776 5.54734 5.62411 5.68797 5.71175 5.74889 5.79391 5.83430 5.90597 5.98061 6.06153 6.09850 6.14929 6.22883 6.28835 6.31431 6.45440 6.62860 7.18034 7.25581 7.32505 7.57724 8.09028 8.21767 8.64544 9.20788 9.57000 10.09130 10.78324 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017917 B = 0.002122 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.343738 B =13191.506272 C =14120.791273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.596 5.596 3 C 0.140 3.860 4 C -0.109 4.109 5 H 0.087 0.913 6 C -0.121 4.121 7 C 0.033 3.967 8 N -0.494 5.494 9 C 0.038 3.962 10 C 0.442 3.558 11 O -0.577 6.577 12 N -0.565 5.565 13 C -0.297 4.297 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.903 5.903 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.269 1.269 20 H -0.284 1.284 21 C 0.050 3.950 22 C 0.649 3.351 23 O -0.560 6.560 24 O -0.365 6.365 25 C 0.135 3.865 26 C -0.183 4.183 27 C -0.139 4.139 28 C -0.184 4.184 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.089 0.911 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.108 0.892 43 H 0.038 0.962 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.065 0.935 50 H 0.090 0.910 51 H 0.069 0.931 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.421 -21.438 5.105 27.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.336 5.336 3 C 0.019 3.981 4 C -0.129 4.129 5 H 0.105 0.895 6 C -0.159 4.159 7 C -0.095 4.095 8 N -0.218 5.218 9 C -0.094 4.094 10 C 0.228 3.772 11 O -0.460 6.460 12 N -0.201 5.201 13 C -0.427 4.427 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.757 3.243 18 H -0.204 1.204 19 H -0.194 1.194 20 H -0.210 1.210 21 C -0.078 4.078 22 C 0.404 3.596 23 O -0.449 6.449 24 O -0.280 6.280 25 C 0.099 3.901 26 C -0.241 4.241 27 C -0.197 4.197 28 C -0.241 4.241 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.127 0.873 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.085 0.915 48 H 0.098 0.902 49 H 0.084 0.916 50 H 0.108 0.892 51 H 0.088 0.912 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.152 -22.144 4.770 27.253 hybrid contribution -0.137 1.246 0.619 1.398 sum -15.289 -20.898 5.389 26.449 Atomic orbital electron populations 1.21805 0.78816 1.03142 1.02172 1.46681 1.07127 1.03511 1.76307 1.21561 0.97742 0.81934 0.96902 1.22540 0.96282 0.98734 0.95379 0.89495 1.22461 0.97185 0.97639 0.98595 1.22913 0.89503 0.96624 1.00471 1.64513 1.15623 1.11492 1.30145 1.22078 0.96608 0.88848 1.01868 1.19729 0.89108 0.83849 0.84530 1.90501 1.55963 1.43936 1.55649 1.41864 1.10150 1.05696 1.62435 1.19701 0.84912 0.93076 1.44988 0.87905 1.25261 1.00088 0.95137 0.97538 1.69614 1.34979 0.99564 1.50259 0.85860 0.82169 0.77751 0.78533 1.20445 1.19396 1.20962 1.23268 1.02706 0.92544 0.89277 1.18024 0.84070 0.81146 0.76354 1.90934 1.12145 1.86663 1.55141 1.86282 1.41067 1.13830 1.86775 1.22055 0.90843 0.80636 0.96601 1.22514 1.00645 1.04618 0.96278 1.21848 0.99553 0.95043 1.03211 1.22514 1.00677 1.04636 0.96277 0.92427 0.90726 0.90929 0.88994 0.89875 0.91753 0.91518 0.94043 0.90654 0.93524 0.89239 0.77523 0.91926 0.87342 0.94399 0.92330 0.91199 0.89253 0.91533 0.90199 0.91606 0.89164 0.91213 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 9.27 59.85 0.55 1.17 16 2 N -0.60 -6.39 2.79 -187.42 -0.52 -6.92 16 3 C 0.14 1.60 4.86 -4.04 -0.02 1.58 16 4 C -0.11 -1.45 3.30 -88.76 -0.29 -1.74 16 5 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 6 C -0.12 -1.33 5.42 -25.37 -0.14 -1.47 16 7 C 0.03 0.43 6.70 -2.75 -0.02 0.41 16 8 N -0.49 -8.53 5.11 -231.90 -1.18 -9.72 16 9 C 0.04 0.69 5.30 -4.98 -0.03 0.67 16 10 C 0.44 10.60 7.41 -10.99 -0.08 10.52 16 11 O -0.58 -15.74 13.87 5.55 0.08 -15.67 16 12 N -0.56 -14.46 5.29 -10.97 -0.06 -14.51 16 13 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 14 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 15 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 16 N -0.90 -24.72 13.05 55.50 0.72 -23.99 16 17 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 21 C 0.05 0.84 5.04 -1.90 -0.01 0.83 16 22 C 0.65 8.27 7.70 54.05 0.42 8.69 16 23 O -0.56 -8.63 11.46 -19.28 -0.22 -8.85 16 24 O -0.36 -4.04 8.71 -40.33 -0.35 -4.39 16 25 C 0.14 1.27 1.13 -90.62 -0.10 1.17 16 26 C -0.18 -1.71 8.37 37.16 0.31 -1.40 16 27 C -0.14 -0.90 8.85 37.16 0.33 -0.57 16 28 C -0.18 -1.81 8.37 37.16 0.31 -1.50 16 29 H 0.06 0.40 7.77 -51.93 -0.40 -0.01 16 30 H 0.07 0.52 7.37 -51.93 -0.38 0.13 16 31 H 0.07 0.41 7.89 -51.93 -0.41 0.00 16 32 H 0.09 1.21 7.42 -51.93 -0.39 0.82 16 33 H 0.08 0.78 7.83 -51.93 -0.41 0.37 16 34 H 0.06 0.58 7.20 -51.93 -0.37 0.21 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.04 0.49 7.68 -51.93 -0.40 0.09 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.77 7.99 -51.92 -0.41 0.36 16 39 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.11 2.23 6.43 -51.93 -0.33 1.90 16 43 H 0.04 0.61 7.92 -51.93 -0.41 0.19 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 1.08 5.88 -51.93 -0.31 0.77 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.09 1.15 5.88 -51.93 -0.31 0.85 16 51 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 52 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 408.26 15.07 6.15 6.15 Total: -1.00 -33.01 408.26 -8.43 -41.44 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -9.01 Total: 9.86 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 0.99 Total: 10.32 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -1.04 Total: -55.14 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.50 Total: -28.91 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.01 -8.43 -41.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171743239.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.321 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds