Wall clock time and date at job start Wed Apr 1 2020 00:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 119.99554 * 2 1 4 4 C 1.52995 * 109.47289 * 269.99508 * 3 2 1 5 5 H 1.09004 * 110.64245 * 303.31032 * 4 3 2 6 6 C 1.54604 * 110.72334 * 66.45422 * 4 3 2 7 7 C 1.53991 * 105.14050 * 140.49299 * 6 4 3 8 8 N 1.47905 * 107.05809 * 1.22852 * 7 6 4 9 9 C 1.46894 * 111.00295 * 214.15199 * 8 7 6 10 10 C 1.50695 * 109.47705 * 176.63867 * 9 8 7 11 11 O 1.21293 * 119.99598 * 6.13247 * 10 9 8 12 12 N 1.34770 * 120.00499 * 186.14160 * 10 9 8 13 13 C 1.37094 * 120.00231 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00226 * 359.97438 * 13 12 10 15 15 C 1.38957 * 120.00171 * 179.97438 * 13 12 10 16 16 N 1.31409 * 119.99740 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99892 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47073 * 270.00093 * 17 15 13 19 19 H 1.48496 * 109.47238 * 30.00697 * 17 15 13 20 20 H 1.48505 * 109.46622 * 150.00473 * 17 15 13 21 21 C 1.48535 * 105.82048 * 334.66782 * 8 7 6 22 22 C 1.34767 * 120.00326 * 179.97438 * 2 1 3 23 23 O 1.21514 * 120.00285 * 179.97438 * 22 2 1 24 24 O 1.34641 * 120.00298 * 0.02562 * 22 2 1 25 25 C 1.45195 * 117.00360 * 179.97438 * 24 22 2 26 26 C 1.52997 * 109.47293 * 59.99794 * 25 24 22 27 27 C 1.53001 * 109.47291 * 179.97438 * 25 24 22 28 28 C 1.53004 * 109.46994 * 299.99409 * 25 24 22 29 29 H 1.08998 * 109.46696 * 90.00371 * 1 2 3 30 30 H 1.08996 * 109.46776 * 209.99790 * 1 2 3 31 31 H 1.08994 * 109.47661 * 330.00112 * 1 2 3 32 32 H 1.09004 * 109.46842 * 149.99600 * 3 2 1 33 33 H 1.08995 * 109.47522 * 29.99869 * 3 2 1 34 34 H 1.08996 * 110.30520 * 21.58122 * 6 4 3 35 35 H 1.08997 * 110.30761 * 259.41541 * 6 4 3 36 36 H 1.08993 * 109.92317 * 241.87814 * 7 6 4 37 37 H 1.09005 * 110.08057 * 120.66782 * 7 6 4 38 38 H 1.09010 * 109.46872 * 56.63525 * 9 8 7 39 39 H 1.09001 * 109.47040 * 296.64207 * 9 8 7 40 40 H 0.97003 * 120.00014 * 359.97438 * 12 10 9 41 41 H 0.97000 * 119.99605 * 180.02562 * 16 15 13 42 42 H 1.08996 * 110.66795 * 157.63752 * 21 8 7 43 43 H 1.08995 * 110.66937 * 280.77474 * 21 8 7 44 44 H 1.08993 * 109.47514 * 59.99897 * 26 25 24 45 45 H 1.08996 * 109.47225 * 180.02562 * 26 25 24 46 46 H 1.09003 * 109.47137 * 299.99603 * 26 25 24 47 47 H 1.09002 * 109.46794 * 59.99624 * 27 25 24 48 48 H 1.08996 * 109.47114 * 179.97438 * 27 25 24 49 49 H 1.08995 * 109.47128 * 300.00229 * 27 25 24 50 50 H 1.09000 * 109.46687 * 60.00639 * 28 25 24 51 51 H 1.08999 * 109.46722 * 179.97438 * 28 25 24 52 52 H 1.08993 * 109.47465 * 300.00397 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 1 2.9909 0.9378 -1.9914 6 6 1.1234 2.0594 -2.1509 7 6 1.4365 3.3030 -3.0035 8 7 2.8692 3.6138 -2.8076 9 6 3.1035 5.0634 -2.8457 10 6 4.5562 5.3453 -2.5612 11 8 5.3430 4.4280 -2.4578 12 7 4.9812 6.6166 -2.4213 13 6 6.3028 6.8730 -2.1619 14 1 7.0032 6.0562 -2.0692 15 6 6.7411 8.1837 -2.0182 16 7 5.8887 9.1776 -2.1304 17 14 8.5417 8.5329 -1.6640 18 1 8.7609 8.5610 -0.1956 19 1 9.3809 7.4680 -2.2696 20 1 8.9145 9.8476 -2.2453 21 6 3.2279 3.0513 -1.4805 22 6 2.1389 -1.1671 0.0005 23 8 3.3541 -1.1671 0.0001 24 8 1.4659 -2.3332 0.0005 25 6 2.2567 -3.5508 0.0005 26 6 3.1394 -3.5857 1.2497 27 6 1.3248 -4.7643 0.0012 28 6 3.1393 -3.5857 -1.2488 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 3.1499 1.1385 0.5139 33 1 1.6084 2.0284 0.5138 34 1 0.3520 2.2892 -1.4159 35 1 0.8062 1.2339 -2.7880 36 1 0.8259 4.1432 -2.6731 37 1 1.2424 3.0940 -4.0555 38 1 2.4843 5.5514 -2.0928 39 1 2.8454 5.4474 -3.8327 40 1 4.3521 7.3502 -2.5041 41 1 6.1948 10.0926 -2.0305 42 1 4.3017 2.8767 -1.4141 43 1 2.8941 3.7115 -0.6799 44 1 2.5107 -3.5609 2.1397 45 1 3.7334 -4.4996 1.2495 46 1 3.8034 -2.7213 1.2496 47 1 0.6956 -4.7396 -0.8886 48 1 1.9185 -5.6784 0.0007 49 1 0.6963 -4.7392 0.8913 50 1 3.8032 -2.7213 -1.2488 51 1 3.7333 -4.4997 -1.2486 52 1 2.5104 -3.5609 -2.1387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171743239.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:40 Heat of formation + Delta-G solvation = -131.146164 kcal Electronic energy + Delta-G solvation = -30817.046609 eV Core-core repulsion = 26622.971515 eV Total energy + Delta-G solvation = -4194.075094 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.89784 -40.74072 -39.49891 -38.35400 -36.68011 -35.94173 -34.98275 -33.50829 -33.08014 -30.64799 -28.62060 -28.36828 -28.29023 -27.87295 -26.76229 -25.60286 -22.85193 -22.23959 -21.24657 -20.99694 -20.31694 -19.86773 -18.76867 -17.90154 -17.70163 -17.42147 -16.93675 -16.59246 -16.34820 -16.24556 -15.93425 -15.63795 -15.37388 -15.22759 -14.79964 -14.49740 -14.45478 -14.21148 -14.08171 -13.59337 -13.44384 -13.37414 -13.20382 -13.10843 -13.09929 -12.93541 -12.90049 -12.84135 -12.79471 -12.50030 -12.42491 -12.34714 -12.26466 -12.14648 -12.07106 -11.73075 -11.53134 -11.46001 -11.37176 -11.04582 -10.26312 -10.01231 -9.78382 -9.27864 -8.47446 -5.95724 1.13342 1.36565 1.40276 1.53139 1.76631 2.04354 2.28126 2.82248 2.91276 3.19327 3.34178 3.69165 3.73714 3.77086 3.80666 3.95076 3.96116 4.14685 4.28693 4.32871 4.34685 4.37604 4.47084 4.52063 4.58968 4.61016 4.63827 4.68599 4.75787 4.76489 4.79478 4.82181 4.84714 4.89370 4.92589 5.00168 5.09933 5.13005 5.24307 5.28348 5.28670 5.34342 5.40444 5.46824 5.52262 5.88319 5.99517 6.14667 6.30774 6.60540 7.12692 7.29776 7.55640 8.12370 8.69986 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017917 B = 0.002122 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.343738 B =13191.506272 C =14120.791273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.593 5.593 3 C 0.146 3.854 4 C -0.097 4.097 5 H 0.052 0.948 6 C -0.108 4.108 7 C 0.032 3.968 8 N -0.522 5.522 9 C 0.051 3.949 10 C 0.438 3.562 11 O -0.617 6.617 12 N -0.573 5.573 13 C -0.332 4.332 14 H 0.076 0.924 15 C -0.013 4.013 16 N -0.919 5.919 17 Si 0.992 3.008 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.269 1.269 21 C 0.053 3.947 22 C 0.641 3.359 23 O -0.597 6.597 24 O -0.361 6.361 25 C 0.125 3.875 26 C -0.179 4.179 27 C -0.132 4.132 28 C -0.181 4.181 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.396 0.604 41 H 0.278 0.722 42 H 0.056 0.944 43 H 0.046 0.954 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.056 0.944 47 H 0.070 0.930 48 H 0.099 0.901 49 H 0.073 0.927 50 H 0.054 0.946 51 H 0.088 0.912 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.330 -21.795 5.470 29.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.332 5.332 3 C 0.024 3.976 4 C -0.117 4.117 5 H 0.071 0.929 6 C -0.146 4.146 7 C -0.095 4.095 8 N -0.247 5.247 9 C -0.080 4.080 10 C 0.225 3.775 11 O -0.503 6.503 12 N -0.211 5.211 13 C -0.462 4.462 14 H 0.094 0.906 15 C -0.213 4.213 16 N -0.560 5.560 17 Si 0.815 3.185 18 H -0.196 1.196 19 H -0.200 1.200 20 H -0.194 1.194 21 C -0.075 4.075 22 C 0.396 3.604 23 O -0.488 6.488 24 O -0.276 6.276 25 C 0.088 3.912 26 C -0.237 4.237 27 C -0.189 4.189 28 C -0.238 4.238 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.127 0.873 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.107 0.893 46 H 0.075 0.925 47 H 0.089 0.911 48 H 0.118 0.882 49 H 0.092 0.908 50 H 0.073 0.927 51 H 0.107 0.893 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.127 -22.497 5.129 29.343 hybrid contribution 0.775 1.296 0.480 1.585 sum -17.351 -21.201 5.609 27.964 Atomic orbital electron populations 1.22072 0.76225 1.04736 1.03319 1.46766 1.08588 1.02448 1.75419 1.21449 0.97519 0.83099 0.95527 1.22326 0.96984 0.95806 0.96610 0.92901 1.22443 0.96128 0.97101 0.98891 1.23025 0.86790 0.98155 1.01493 1.64436 1.19150 1.10632 1.30441 1.21954 0.92295 0.90206 1.03583 1.20809 0.91462 0.82697 0.82508 1.90491 1.57986 1.45007 1.56830 1.41918 1.09518 1.06536 1.63083 1.19624 0.86002 0.93084 1.47442 0.90597 1.26019 1.04127 0.94451 0.96658 1.69667 1.36495 0.99942 1.49897 0.84948 0.77107 0.77747 0.78654 1.19574 1.20050 1.19370 1.23046 1.00171 0.94683 0.89645 1.18319 0.83833 0.82060 0.76166 1.90930 1.13946 1.87256 1.56676 1.86292 1.41030 1.13762 1.86497 1.22383 0.91625 0.81068 0.96077 1.22462 1.00438 1.04035 0.96721 1.21856 0.99293 0.93966 1.03805 1.22466 1.00471 1.03960 0.96877 0.91396 0.90200 0.88407 0.91752 0.86682 0.88441 0.90527 0.91814 0.89914 0.90953 0.87288 0.76963 0.91282 0.92576 0.93563 0.91628 0.89314 0.92549 0.91090 0.88218 0.90834 0.92708 0.89277 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 9.27 127.77 1.18 2.09 16 2 N -0.59 -12.12 2.79 -977.28 -2.73 -14.84 16 3 C 0.15 3.28 4.86 86.38 0.42 3.70 16 4 C -0.10 -2.57 3.30 -9.59 -0.03 -2.60 16 5 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 6 C -0.11 -2.06 5.42 31.47 0.17 -1.89 16 7 C 0.03 0.75 6.70 86.44 0.58 1.33 16 8 N -0.52 -17.78 5.11 -887.59 -4.54 -22.31 16 9 C 0.05 1.82 5.30 85.56 0.45 2.28 16 10 C 0.44 21.57 7.41 87.66 0.65 22.22 16 11 O -0.62 -35.58 13.87 -3.07 -0.04 -35.63 16 12 N -0.57 -30.08 5.29 -307.00 -1.62 -31.70 16 13 C -0.33 -19.28 9.68 84.04 0.81 -18.47 16 14 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 15 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 16 N -0.92 -50.07 13.05 21.67 0.28 -49.78 16 17 Si 0.99 43.88 29.55 68.60 2.03 45.90 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 C 0.05 1.82 5.04 86.65 0.44 2.26 16 22 C 0.64 16.65 7.70 129.79 1.00 17.65 16 23 O -0.60 -19.82 11.46 19.80 0.23 -19.59 16 24 O -0.36 -7.80 8.71 -55.50 -0.48 -8.28 16 25 C 0.12 2.27 1.13 -10.79 -0.01 2.25 16 26 C -0.18 -3.33 8.37 71.98 0.60 -2.73 16 27 C -0.13 -1.40 8.85 71.98 0.64 -0.77 16 28 C -0.18 -3.60 8.37 71.98 0.60 -3.00 16 29 H 0.07 0.68 7.77 -2.39 -0.02 0.66 16 30 H 0.08 0.88 7.37 -2.39 -0.02 0.86 16 31 H 0.10 0.67 7.89 -2.39 -0.02 0.65 16 32 H 0.06 1.81 7.42 -2.38 -0.02 1.79 16 33 H 0.12 1.85 7.83 -2.39 -0.02 1.84 16 34 H 0.10 1.27 7.20 -2.39 -0.02 1.25 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.06 1.23 7.68 -2.39 -0.02 1.21 16 37 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.07 2.23 7.99 -2.38 -0.02 2.21 16 39 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 40 H 0.40 19.62 7.90 -92.71 -0.73 18.88 16 41 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 42 H 0.06 2.51 6.43 -2.39 -0.02 2.50 16 43 H 0.05 1.48 7.92 -2.39 -0.02 1.46 16 44 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.06 1.45 5.88 -2.39 -0.01 1.44 16 47 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.05 1.51 5.88 -2.39 -0.01 1.50 16 51 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -76.98 408.26 1.28 -75.70 By element: Atomic # 1 Polarization: 36.27 SS G_CDS: 0.18 Total: 36.45 kcal Atomic # 6 Polarization: 16.10 SS G_CDS: 7.97 Total: 24.08 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -8.60 Total: -118.64 kcal Atomic # 8 Polarization: -63.20 SS G_CDS: -0.30 Total: -63.50 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -76.98 1.28 -75.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171743239.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.442 kcal (2) G-P(sol) polarization free energy of solvation -76.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds