Wall clock time and date at job start Wed Apr 1 2020 00:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46907 * 110.99631 * 2 1 4 4 C 1.50694 * 109.47113 * 66.04877 * 3 2 1 5 5 O 1.21291 * 120.00429 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99872 * 179.97438 * 4 3 2 7 7 C 1.37100 * 120.00149 * 179.97438 * 6 4 3 8 8 H 1.08001 * 119.99836 * 0.02562 * 7 6 4 9 9 C 1.38947 * 120.00163 * 180.02562 * 7 6 4 10 10 N 1.31414 * 120.00029 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00073 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47090 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47196 * 120.00029 * 11 9 7 14 14 H 1.48506 * 109.46870 * 240.00022 * 11 9 7 15 15 C 1.46900 * 110.99876 * 236.04958 * 2 1 3 16 16 C 1.53346 * 109.42051 * 59.08028 * 15 2 1 17 17 C 1.53195 * 109.14901 * 178.67519 * 16 15 2 18 18 N 1.46919 * 108.89273 * 54.57640 * 17 16 15 19 19 C 1.34778 * 120.63255 * 126.34238 * 18 17 16 20 20 O 1.21514 * 119.99756 * 359.97438 * 19 18 17 21 21 O 1.34636 * 120.00135 * 179.97438 * 19 18 17 22 22 C 1.45208 * 116.99983 * 179.97438 * 21 19 18 23 23 C 1.53004 * 109.46779 * 60.00283 * 22 21 19 24 24 C 1.53001 * 109.46807 * 180.02562 * 22 21 19 25 25 C 1.52998 * 109.46984 * 300.00006 * 22 21 19 26 26 C 1.46933 * 118.74003 * 306.32349 * 18 17 16 27 27 C 1.53034 * 109.45742 * 298.94971 * 15 2 1 28 28 H 1.08999 * 109.46902 * 183.95248 * 1 2 3 29 29 H 1.09005 * 109.47234 * 303.95125 * 1 2 3 30 30 H 1.09005 * 109.47500 * 63.95036 * 1 2 3 31 31 H 1.09003 * 109.46523 * 186.04661 * 3 2 1 32 32 H 1.08998 * 109.47100 * 306.04544 * 3 2 1 33 33 H 0.97000 * 119.99955 * 0.02562 * 6 4 3 34 34 H 0.96999 * 119.99942 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.44481 * 178.98598 * 15 2 1 36 36 H 1.08997 * 109.68637 * 58.70728 * 16 15 2 37 37 H 1.09002 * 109.47277 * 298.50984 * 16 15 2 38 38 H 1.09002 * 109.58720 * 294.71670 * 17 16 15 39 39 H 1.08996 * 109.58651 * 174.43567 * 17 16 15 40 40 H 1.08997 * 109.47283 * 60.00046 * 23 22 21 41 41 H 1.08999 * 109.46530 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.47087 * 299.99777 * 23 22 21 43 43 H 1.08991 * 109.47427 * 59.99908 * 24 22 21 44 44 H 1.08999 * 109.46544 * 180.02562 * 24 22 21 45 45 H 1.09005 * 109.46960 * 299.99932 * 24 22 21 46 46 H 1.09002 * 109.47165 * 60.00049 * 25 22 21 47 47 H 1.08999 * 109.46767 * 179.97438 * 25 22 21 48 48 H 1.08997 * 109.47507 * 299.99772 * 25 22 21 49 49 H 1.08994 * 109.58580 * 173.39910 * 26 18 17 50 50 H 1.09006 * 109.57831 * 293.67403 * 26 18 17 51 51 H 1.08994 * 109.50232 * 61.43691 * 27 15 2 52 52 H 1.09007 * 109.52628 * 301.35352 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0046 1.4456 2.1408 6 7 2.0188 3.3199 1.5237 7 6 1.6922 3.9348 2.7047 8 1 1.1292 3.3992 3.4548 9 6 2.0855 5.2471 2.9367 10 7 2.7709 5.8988 2.0243 11 14 1.6411 6.0847 4.5462 12 1 0.8730 5.1424 5.3990 13 1 2.8827 6.4918 5.2517 14 1 0.8137 7.2859 4.2672 15 6 1.9954 -0.7659 -1.1376 16 6 1.4843 -0.1513 -2.4463 17 6 2.0634 -0.9342 -3.6289 18 7 1.7392 -2.3574 -3.4618 19 6 1.1184 -3.0403 -4.4440 20 8 0.8210 -2.4790 -5.4799 21 8 0.8279 -4.3443 -4.2774 22 6 0.1581 -5.0161 -5.3768 23 6 1.0366 -4.9472 -6.6276 24 6 -0.0880 -6.4799 -5.0059 25 6 -1.1803 -4.3290 -5.6550 26 6 2.1051 -3.0223 -2.2036 27 6 1.5260 -2.2189 -1.0349 28 1 -0.3633 -1.0252 0.0708 29 1 -0.3634 0.5740 0.8525 30 1 -0.3634 0.4513 -0.9233 31 1 3.0797 1.3444 -0.1083 32 1 1.5610 1.9274 -0.8309 33 1 2.5241 3.8011 0.8499 34 1 3.0451 6.8150 2.1861 35 1 3.0848 -0.7343 -1.1233 36 1 1.7992 0.8902 -2.5103 37 1 0.3959 -0.2051 -2.4723 38 1 3.1456 -0.8067 -3.6568 39 1 1.6282 -0.5670 -4.5584 40 1 1.9901 -5.4367 -6.4294 41 1 0.5341 -5.4518 -7.4527 42 1 1.2116 -3.9042 -6.8917 43 1 -0.7139 -6.5287 -4.1150 44 1 -0.5904 -6.9843 -5.8314 45 1 0.8653 -6.9697 -4.8074 46 1 -1.0053 -3.2860 -5.9190 47 1 -1.6828 -4.8330 -6.4805 48 1 -1.8061 -4.3781 -4.7639 49 1 1.6954 -4.0322 -2.1915 50 1 3.1907 -3.0673 -2.1165 51 1 0.4373 -2.2532 -1.0740 52 1 1.8699 -2.6471 -0.0933 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174829677.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:14 Heat of formation + Delta-G solvation = -106.723654 kcal Electronic energy + Delta-G solvation = -30972.423359 eV Core-core repulsion = 26779.407304 eV Total energy + Delta-G solvation = -4193.016055 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.13580 -39.56762 -38.21349 -37.09318 -35.66862 -34.28045 -33.84040 -31.49095 -31.24604 -31.15976 -27.89044 -27.72864 -27.67620 -26.08482 -24.75327 -23.90562 -23.04267 -21.72886 -20.14177 -19.25184 -19.06713 -18.07907 -17.81779 -16.92125 -16.42770 -16.26801 -15.57697 -15.13535 -14.92620 -14.85523 -14.66968 -14.65620 -14.19493 -14.00269 -13.90170 -13.63580 -13.59331 -13.27194 -12.87249 -12.79010 -12.45323 -12.36735 -12.29703 -12.20808 -12.14218 -11.86935 -11.70986 -11.58570 -11.54324 -11.41998 -11.22679 -11.14002 -10.89969 -10.83038 -10.63677 -10.49902 -10.33855 -10.22002 -10.16795 -9.47644 -8.98125 -8.42821 -7.96299 -7.79169 -6.41102 -3.81721 1.91250 2.63788 3.16627 3.27183 3.34309 3.56535 3.91236 3.96833 4.24466 4.39960 4.44528 4.56160 4.58964 4.70082 4.85360 4.94898 5.06756 5.10314 5.14116 5.20187 5.21859 5.25943 5.27941 5.35986 5.36547 5.45345 5.53253 5.54435 5.57755 5.61916 5.66543 5.75723 5.78264 5.81686 5.90819 5.97379 5.97969 6.01923 6.07073 6.19627 6.23933 6.29851 6.31709 6.59044 7.14975 7.29531 7.41306 7.56166 8.07688 8.13302 8.62881 9.19256 9.55673 10.07621 10.76739 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.033121 B = 0.001908 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.188659 B =14671.403172 C =14937.943225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.510 5.510 3 C 0.044 3.956 4 C 0.444 3.556 5 O -0.577 6.577 6 N -0.565 5.565 7 C -0.297 4.297 8 H 0.103 0.897 9 C 0.021 3.979 10 N -0.902 5.902 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.084 3.916 16 C -0.173 4.173 17 C 0.133 3.867 18 N -0.593 5.593 19 C 0.654 3.346 20 O -0.572 6.572 21 O -0.362 6.362 22 C 0.135 3.865 23 C -0.183 4.183 24 C -0.140 4.140 25 C -0.183 4.183 26 C 0.113 3.887 27 C -0.126 4.126 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.017 0.983 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.392 0.608 34 H 0.271 0.729 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.092 0.908 50 H 0.072 0.928 51 H 0.069 0.931 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.561 -21.040 -16.935 27.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.232 5.232 3 C -0.087 4.087 4 C 0.230 3.770 5 O -0.462 6.462 6 N -0.202 5.202 7 C -0.427 4.427 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.544 5.544 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.025 4.025 16 C -0.213 4.213 17 C 0.011 3.989 18 N -0.334 5.334 19 C 0.409 3.591 20 O -0.462 6.462 21 O -0.277 6.277 22 C 0.098 3.902 23 C -0.240 4.240 24 C -0.198 4.198 25 C -0.240 4.240 26 C -0.009 4.009 27 C -0.165 4.165 28 H 0.079 0.921 29 H 0.113 0.887 30 H 0.035 0.965 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.225 0.775 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.106 0.894 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.110 0.890 50 H 0.090 0.910 51 H 0.088 0.912 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.888 -21.374 -16.252 26.917 hybrid contribution -0.112 1.287 -0.449 1.367 sum -2.000 -20.087 -16.701 26.200 Atomic orbital electron populations 1.22593 0.87069 1.01948 1.01405 1.61839 1.08680 1.12773 1.39865 1.21875 1.00617 0.89152 0.97052 1.19755 0.85387 0.82918 0.88967 1.90485 1.43860 1.64662 1.47145 1.41879 1.49474 1.10803 1.18058 1.19742 1.32770 0.95420 0.94754 0.87881 1.25259 0.96877 0.96678 0.99219 1.69620 1.38151 1.12185 1.34404 0.85807 0.78192 0.79015 0.81372 1.19237 1.20766 1.20817 1.21838 0.99746 0.93258 0.87667 1.22770 1.02303 1.00341 0.95888 1.21575 1.00192 0.77304 0.99840 1.47030 1.60178 1.10748 1.15447 1.17963 0.77402 0.80678 0.83078 1.90881 1.58017 1.69815 1.27495 1.86295 1.73198 1.22480 1.45743 1.22066 0.91855 0.91728 0.84504 1.22508 0.99608 1.05136 0.96721 1.21856 1.02881 0.92223 1.02797 1.22511 0.95515 1.03743 1.02276 1.21774 1.00304 0.96761 0.82110 1.21986 1.01593 0.94628 0.98256 0.92108 0.88738 0.96471 0.89465 0.93352 0.77526 0.91959 0.89809 0.89947 0.90874 0.90913 0.88736 0.92236 0.91222 0.89393 0.91415 0.90196 0.91487 0.89401 0.91218 0.92148 0.88961 0.90971 0.91189 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.46 60.06 0.51 0.79 16 2 N -0.51 -8.08 4.49 -236.09 -1.06 -9.14 16 3 C 0.04 0.77 4.89 -4.97 -0.02 0.74 16 4 C 0.44 10.33 7.47 -10.99 -0.08 10.24 16 5 O -0.58 -15.35 13.91 5.55 0.08 -15.28 16 6 N -0.57 -14.19 5.29 -10.96 -0.06 -14.25 16 7 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 9 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 10 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 11 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 C 0.08 1.00 2.19 -67.52 -0.15 0.85 16 16 C -0.17 -1.90 4.67 -26.45 -0.12 -2.02 16 17 C 0.13 1.34 6.42 -3.71 -0.02 1.31 16 18 N -0.59 -6.29 2.97 -178.56 -0.53 -6.82 16 19 C 0.65 7.88 7.74 54.06 0.42 8.29 16 20 O -0.57 -7.97 11.29 -19.28 -0.22 -8.19 16 21 O -0.36 -3.88 8.53 -40.31 -0.34 -4.23 16 22 C 0.14 1.18 1.13 -90.62 -0.10 1.08 16 23 C -0.18 -1.53 8.37 37.16 0.31 -1.22 16 24 C -0.14 -0.86 8.85 37.16 0.33 -0.53 16 25 C -0.18 -1.62 8.37 37.16 0.31 -1.31 16 26 C 0.11 1.01 6.45 -3.71 -0.02 0.99 16 27 C -0.13 -1.30 5.11 -26.62 -0.14 -1.44 16 28 H 0.06 0.87 6.36 -51.93 -0.33 0.54 16 29 H 0.09 1.86 5.82 -51.93 -0.30 1.56 16 30 H 0.02 0.25 6.31 -51.93 -0.33 -0.08 16 31 H 0.09 1.36 8.00 -51.93 -0.42 0.95 16 32 H 0.05 0.77 6.90 -51.93 -0.36 0.41 16 33 H 0.39 9.41 7.90 -40.82 -0.32 9.08 16 34 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.08 0.94 8.03 -51.93 -0.42 0.52 16 36 H 0.08 0.90 6.70 -51.93 -0.35 0.55 16 37 H 0.07 0.89 6.47 -51.93 -0.34 0.56 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.04 7.00 -51.93 -0.36 0.68 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.95 5.88 -51.93 -0.31 0.64 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 0.99 5.88 -51.93 -0.31 0.69 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.09 0.78 6.93 -51.93 -0.36 0.42 16 50 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.07 0.79 6.50 -51.93 -0.34 0.45 16 52 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 LS Contribution 397.29 15.07 5.99 5.99 Total: -1.00 -32.03 397.29 -8.04 -40.07 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -8.57 Total: 9.73 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 0.97 Total: 9.86 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.92 Total: -53.96 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.48 Total: -27.69 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.03 -8.04 -40.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174829677.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.649 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds