Wall clock time and date at job start Wed Apr 1 2020 00:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46907 * 110.99631 * 2 1 4 4 C 1.50694 * 109.47113 * 66.04877 * 3 2 1 5 5 O 1.21291 * 120.00429 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99872 * 179.97438 * 4 3 2 7 7 C 1.37100 * 120.00149 * 179.97438 * 6 4 3 8 8 H 1.08001 * 119.99836 * 0.02562 * 7 6 4 9 9 C 1.38947 * 120.00163 * 180.02562 * 7 6 4 10 10 N 1.31414 * 120.00029 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00073 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47090 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47196 * 120.00029 * 11 9 7 14 14 H 1.48506 * 109.46870 * 240.00022 * 11 9 7 15 15 C 1.46900 * 110.99876 * 236.04958 * 2 1 3 16 16 C 1.53346 * 109.42051 * 59.08028 * 15 2 1 17 17 C 1.53195 * 109.14901 * 178.67519 * 16 15 2 18 18 N 1.46919 * 108.89273 * 54.57640 * 17 16 15 19 19 C 1.34778 * 120.63255 * 126.34238 * 18 17 16 20 20 O 1.21514 * 119.99756 * 359.97438 * 19 18 17 21 21 O 1.34636 * 120.00135 * 179.97438 * 19 18 17 22 22 C 1.45208 * 116.99983 * 179.97438 * 21 19 18 23 23 C 1.53004 * 109.46779 * 60.00283 * 22 21 19 24 24 C 1.53001 * 109.46807 * 180.02562 * 22 21 19 25 25 C 1.52998 * 109.46984 * 300.00006 * 22 21 19 26 26 C 1.46933 * 118.74003 * 306.32349 * 18 17 16 27 27 C 1.53034 * 109.45742 * 298.94971 * 15 2 1 28 28 H 1.08999 * 109.46902 * 183.95248 * 1 2 3 29 29 H 1.09005 * 109.47234 * 303.95125 * 1 2 3 30 30 H 1.09005 * 109.47500 * 63.95036 * 1 2 3 31 31 H 1.09003 * 109.46523 * 186.04661 * 3 2 1 32 32 H 1.08998 * 109.47100 * 306.04544 * 3 2 1 33 33 H 0.97000 * 119.99955 * 0.02562 * 6 4 3 34 34 H 0.96999 * 119.99942 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.44481 * 178.98598 * 15 2 1 36 36 H 1.08997 * 109.68637 * 58.70728 * 16 15 2 37 37 H 1.09002 * 109.47277 * 298.50984 * 16 15 2 38 38 H 1.09002 * 109.58720 * 294.71670 * 17 16 15 39 39 H 1.08996 * 109.58651 * 174.43567 * 17 16 15 40 40 H 1.08997 * 109.47283 * 60.00046 * 23 22 21 41 41 H 1.08999 * 109.46530 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.47087 * 299.99777 * 23 22 21 43 43 H 1.08991 * 109.47427 * 59.99908 * 24 22 21 44 44 H 1.08999 * 109.46544 * 180.02562 * 24 22 21 45 45 H 1.09005 * 109.46960 * 299.99932 * 24 22 21 46 46 H 1.09002 * 109.47165 * 60.00049 * 25 22 21 47 47 H 1.08999 * 109.46767 * 179.97438 * 25 22 21 48 48 H 1.08997 * 109.47507 * 299.99772 * 25 22 21 49 49 H 1.08994 * 109.58580 * 173.39910 * 26 18 17 50 50 H 1.09006 * 109.57831 * 293.67403 * 26 18 17 51 51 H 1.08994 * 109.50232 * 61.43691 * 27 15 2 52 52 H 1.09007 * 109.52628 * 301.35352 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0046 1.4456 2.1408 6 7 2.0188 3.3199 1.5237 7 6 1.6922 3.9348 2.7047 8 1 1.1292 3.3992 3.4548 9 6 2.0855 5.2471 2.9367 10 7 2.7709 5.8988 2.0243 11 14 1.6411 6.0847 4.5462 12 1 0.8730 5.1424 5.3990 13 1 2.8827 6.4918 5.2517 14 1 0.8137 7.2859 4.2672 15 6 1.9954 -0.7659 -1.1376 16 6 1.4843 -0.1513 -2.4463 17 6 2.0634 -0.9342 -3.6289 18 7 1.7392 -2.3574 -3.4618 19 6 1.1184 -3.0403 -4.4440 20 8 0.8210 -2.4790 -5.4799 21 8 0.8279 -4.3443 -4.2774 22 6 0.1581 -5.0161 -5.3768 23 6 1.0366 -4.9472 -6.6276 24 6 -0.0880 -6.4799 -5.0059 25 6 -1.1803 -4.3290 -5.6550 26 6 2.1051 -3.0223 -2.2036 27 6 1.5260 -2.2189 -1.0349 28 1 -0.3633 -1.0252 0.0708 29 1 -0.3634 0.5740 0.8525 30 1 -0.3634 0.4513 -0.9233 31 1 3.0797 1.3444 -0.1083 32 1 1.5610 1.9274 -0.8309 33 1 2.5241 3.8011 0.8499 34 1 3.0451 6.8150 2.1861 35 1 3.0848 -0.7343 -1.1233 36 1 1.7992 0.8902 -2.5103 37 1 0.3959 -0.2051 -2.4723 38 1 3.1456 -0.8067 -3.6568 39 1 1.6282 -0.5670 -4.5584 40 1 1.9901 -5.4367 -6.4294 41 1 0.5341 -5.4518 -7.4527 42 1 1.2116 -3.9042 -6.8917 43 1 -0.7139 -6.5287 -4.1150 44 1 -0.5904 -6.9843 -5.8314 45 1 0.8653 -6.9697 -4.8074 46 1 -1.0053 -3.2860 -5.9190 47 1 -1.6828 -4.8330 -6.4805 48 1 -1.8061 -4.3781 -4.7639 49 1 1.6954 -4.0322 -2.1915 50 1 3.1907 -3.0673 -2.1165 51 1 0.4373 -2.2532 -1.0740 52 1 1.8699 -2.6471 -0.0933 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174829677.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:13 Heat of formation + Delta-G solvation = -128.669169 kcal Electronic energy + Delta-G solvation = -30973.374988 eV Core-core repulsion = 26779.407304 eV Total energy + Delta-G solvation = -4193.967683 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.97479 -40.74581 -39.68029 -38.13186 -36.77268 -35.84364 -34.97128 -33.26778 -32.39629 -32.11427 -29.36735 -28.34902 -28.27231 -27.32206 -26.40325 -24.82534 -24.14394 -22.60138 -21.19305 -20.74538 -20.08220 -19.80188 -18.93519 -17.87190 -17.69779 -17.24913 -16.64728 -16.55283 -16.32420 -16.14678 -15.73693 -15.59026 -15.47437 -15.16069 -15.03563 -14.85741 -14.62280 -14.26060 -14.03901 -13.78777 -13.48999 -13.43011 -13.12973 -13.11548 -13.03595 -12.87430 -12.84301 -12.81807 -12.68658 -12.47219 -12.39899 -12.33339 -12.22492 -12.11406 -12.09143 -11.74381 -11.50052 -11.39716 -11.37100 -11.02339 -10.25138 -9.97649 -9.81312 -9.10324 -8.45016 -5.93141 1.13878 1.37050 1.42169 1.56138 1.75204 2.08467 2.29346 2.77013 2.83798 3.22070 3.43834 3.72487 3.76852 3.81883 3.84839 3.96810 3.99892 4.07974 4.24510 4.27705 4.37561 4.38959 4.52829 4.53781 4.56155 4.62954 4.64386 4.68419 4.76098 4.78207 4.78793 4.80873 4.85234 4.86007 4.89949 5.01195 5.11740 5.13971 5.20683 5.29437 5.32808 5.34096 5.43172 5.46348 5.53383 5.92186 6.09757 6.24934 6.31752 6.63310 7.15621 7.27286 7.59637 8.15853 8.72568 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.033121 B = 0.001908 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.188659 B =14671.403172 C =14937.943225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.525 5.525 3 C 0.057 3.943 4 C 0.441 3.559 5 O -0.615 6.615 6 N -0.576 5.576 7 C -0.329 4.329 8 H 0.078 0.922 9 C -0.015 4.015 10 N -0.921 5.921 11 Si 0.992 3.008 12 H -0.274 1.274 13 H -0.271 1.271 14 H -0.272 1.272 15 C 0.086 3.914 16 C -0.164 4.164 17 C 0.136 3.864 18 N -0.594 5.594 19 C 0.648 3.352 20 O -0.597 6.597 21 O -0.365 6.365 22 C 0.124 3.876 23 C -0.178 4.178 24 C -0.135 4.135 25 C -0.179 4.179 26 C 0.119 3.881 27 C -0.119 4.119 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.027 0.973 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.396 0.604 34 H 0.277 0.723 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.100 0.900 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.090 0.910 48 H 0.058 0.942 49 H 0.099 0.901 50 H 0.093 0.907 51 H 0.058 0.942 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.740 -22.327 -17.764 28.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.248 5.248 3 C -0.074 4.074 4 C 0.229 3.771 5 O -0.501 6.501 6 N -0.214 5.214 7 C -0.459 4.459 8 H 0.096 0.904 9 C -0.214 4.214 10 N -0.562 5.562 11 Si 0.816 3.184 12 H -0.199 1.199 13 H -0.196 1.196 14 H -0.197 1.197 15 C -0.022 4.022 16 C -0.204 4.204 17 C 0.015 3.985 18 N -0.334 5.334 19 C 0.403 3.597 20 O -0.488 6.488 21 O -0.280 6.280 22 C 0.088 3.912 23 C -0.235 4.235 24 C -0.192 4.192 25 C -0.237 4.237 26 C -0.003 4.003 27 C -0.158 4.158 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.130 0.870 32 H 0.084 0.916 33 H 0.229 0.771 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.119 0.881 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.108 0.892 48 H 0.077 0.923 49 H 0.117 0.883 50 H 0.111 0.889 51 H 0.077 0.923 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.052 -22.675 -17.100 28.419 hybrid contribution -0.402 1.611 -0.235 1.677 sum -1.454 -21.064 -17.335 27.318 Atomic orbital electron populations 1.22413 0.87599 1.02199 0.99952 1.61802 1.08401 1.12117 1.42446 1.21744 1.02166 0.89773 0.93693 1.20836 0.83594 0.82189 0.90497 1.90465 1.45089 1.65391 1.49125 1.41947 1.50154 1.11646 1.17613 1.19673 1.34172 0.96354 0.95718 0.90398 1.26015 0.96390 0.96678 1.02321 1.69677 1.38252 1.12618 1.35663 0.84888 0.78226 0.77858 0.77471 1.19855 1.19620 1.19748 1.21945 1.00464 0.93361 0.86430 1.22663 1.01300 1.00651 0.95767 1.21562 1.01240 0.76978 0.98744 1.47153 1.59705 1.10911 1.15668 1.18165 0.77342 0.81106 0.83070 1.90876 1.58961 1.70405 1.28589 1.86303 1.73247 1.21781 1.46625 1.22403 0.91501 0.92963 0.84363 1.22451 1.00098 1.03619 0.97303 1.21873 1.03418 0.90251 1.03654 1.22465 0.95963 1.02314 1.02929 1.21832 1.01424 0.96518 0.80549 1.21923 1.00932 0.93853 0.99090 0.90624 0.92885 0.95480 0.87008 0.91563 0.77053 0.91392 0.88245 0.89588 0.92405 0.88796 0.89883 0.91808 0.89243 0.92077 0.91397 0.88098 0.90984 0.92187 0.89164 0.92332 0.88310 0.88926 0.92329 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 8.46 127.69 1.08 1.92 16 2 N -0.53 -16.07 4.49 -900.85 -4.04 -20.11 16 3 C 0.06 1.91 4.89 85.55 0.42 2.33 16 4 C 0.44 20.79 7.47 87.65 0.66 21.44 16 5 O -0.61 -33.69 13.91 -3.06 -0.04 -33.74 16 6 N -0.58 -29.41 5.29 -306.99 -1.62 -31.04 16 7 C -0.33 -18.71 9.68 84.04 0.81 -17.90 16 8 H 0.08 4.74 7.16 -2.91 -0.02 4.71 16 9 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 10 N -0.92 -49.68 13.05 21.66 0.28 -49.40 16 11 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 13 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 15 C 0.09 1.85 2.19 45.04 0.10 1.95 16 16 C -0.16 -3.31 4.67 30.78 0.14 -3.16 16 17 C 0.14 2.51 6.42 86.36 0.55 3.07 16 18 N -0.59 -11.64 2.97 -949.25 -2.82 -14.46 16 19 C 0.65 15.13 7.74 129.79 1.00 16.14 16 20 O -0.60 -16.72 11.29 19.80 0.22 -16.50 16 21 O -0.37 -7.40 8.53 -55.46 -0.47 -7.87 16 22 C 0.12 2.00 1.13 -10.79 -0.01 1.99 16 23 C -0.18 -2.77 8.37 71.98 0.60 -2.17 16 24 C -0.14 -1.34 8.85 71.98 0.64 -0.70 16 25 C -0.18 -3.04 8.37 71.98 0.60 -2.44 16 26 C 0.12 1.84 6.45 86.36 0.56 2.39 16 27 C -0.12 -2.24 5.11 30.67 0.16 -2.08 16 28 H 0.08 2.14 6.36 -2.39 -0.02 2.13 16 29 H 0.05 2.16 5.82 -2.38 -0.01 2.14 16 30 H 0.03 0.79 6.31 -2.38 -0.02 0.78 16 31 H 0.11 3.22 8.00 -2.39 -0.02 3.20 16 32 H 0.07 2.00 6.90 -2.39 -0.02 1.99 16 33 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 34 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 35 H 0.10 1.89 8.03 -2.39 -0.02 1.87 16 36 H 0.09 1.69 6.70 -2.39 -0.02 1.67 16 37 H 0.06 1.36 6.47 -2.39 -0.02 1.34 16 38 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 1.77 7.00 -2.39 -0.02 1.75 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.06 1.31 5.88 -2.39 -0.01 1.30 16 43 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 46 H 0.06 1.38 5.88 -2.39 -0.01 1.36 16 47 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.10 1.44 6.93 -2.39 -0.02 1.43 16 50 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 51 H 0.06 1.24 6.50 -2.39 -0.02 1.22 16 52 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -71.15 397.29 1.50 -69.65 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: 0.20 Total: 35.85 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 7.78 Total: 22.48 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -8.21 Total: -115.01 kcal Atomic # 8 Polarization: -57.82 SS G_CDS: -0.29 Total: -58.11 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -71.15 1.50 -69.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174829677.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.020 kcal (2) G-P(sol) polarization free energy of solvation -71.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds