Wall clock time and date at job start Wed Apr 1 2020 00:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46897 * 2 1 4 4 C 1.53009 * 109.46715 * 119.99643 * 2 1 3 5 5 O 1.45198 * 109.46793 * 175.00217 * 4 2 1 6 6 C 1.34637 * 116.99895 * 179.97438 * 5 4 2 7 7 O 1.21503 * 120.00073 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99827 * 179.97438 * 6 5 4 9 9 C 1.46964 * 120.59251 * 180.02562 * 8 6 5 10 10 C 1.53373 * 108.63559 * 235.25542 * 9 8 6 11 11 N 1.46967 * 108.63035 * 310.57273 * 10 9 8 12 12 C 1.34776 * 120.59585 * 235.20332 * 11 10 9 13 13 O 1.21586 * 119.99857 * 5.21095 * 12 11 10 14 14 N 1.34768 * 120.00303 * 184.93414 * 12 11 10 15 15 C 1.46500 * 120.00523 * 175.28538 * 14 12 11 16 16 C 1.52997 * 109.47316 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.46857 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47183 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99743 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00050 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99870 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00129 * 0.02562 * 20 18 17 23 23 H 1.48509 * 109.46933 * 89.99769 * 22 20 18 24 24 H 1.48495 * 109.47367 * 209.99631 * 22 20 18 25 25 H 1.48496 * 109.47005 * 330.00051 * 22 20 18 26 26 C 1.46964 * 118.81267 * 55.48425 * 11 10 9 27 27 C 1.46966 * 120.59588 * 0.02980 * 8 6 5 28 28 H 1.09005 * 109.47296 * 300.00622 * 1 2 3 29 29 H 1.08995 * 109.46871 * 60.00324 * 1 2 3 30 30 H 1.09002 * 109.47460 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47085 * 239.99430 * 2 1 3 32 32 H 1.08995 * 109.47095 * 299.99539 * 3 2 1 33 33 H 1.08991 * 109.47719 * 59.99817 * 3 2 1 34 34 H 1.09006 * 109.47070 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.47000 * 55.00001 * 4 2 1 36 36 H 1.08999 * 109.46700 * 294.99786 * 4 2 1 37 37 H 1.08999 * 109.60839 * 115.50822 * 9 8 6 38 38 H 1.08999 * 109.75195 * 355.07941 * 9 8 6 39 39 H 1.08996 * 109.60832 * 190.83632 * 10 9 8 40 40 H 1.08997 * 109.75151 * 70.40039 * 10 9 8 41 41 H 0.97002 * 120.00131 * 355.28161 * 14 12 11 42 42 H 1.09007 * 109.46761 * 299.99927 * 15 14 12 43 43 H 1.09000 * 109.47106 * 59.99714 * 15 14 12 44 44 H 1.08993 * 109.46885 * 299.99472 * 16 15 14 45 45 H 1.09000 * 109.47403 * 59.99729 * 16 15 14 46 46 H 1.09007 * 109.47020 * 299.99636 * 17 16 15 47 47 H 1.09000 * 109.47307 * 59.99705 * 17 16 15 48 48 H 0.96997 * 119.99843 * 180.02562 * 21 20 18 49 49 H 1.08996 * 109.61024 * 64.25889 * 26 11 10 50 50 H 1.08995 * 109.61287 * 184.77345 * 26 11 10 51 51 H 1.08992 * 109.60802 * 244.49519 * 27 8 6 52 52 H 1.09005 * 109.60644 * 4.83195 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 8 3.4870 -0.8254 1.1913 6 6 4.0976 -1.4381 2.2230 7 8 3.4393 -1.8743 3.1464 8 7 5.4391 -1.5686 2.2310 9 6 6.1191 -2.2355 3.3502 10 6 7.1754 -1.2811 3.9207 11 7 7.9844 -0.7585 2.8106 12 6 9.3259 -0.8881 2.8191 13 8 9.8698 -1.5233 3.7017 14 7 10.0641 -0.3183 1.8461 15 6 11.5268 -0.3707 1.9104 16 6 12.1168 0.3456 0.6940 17 6 13.6444 0.2914 0.7616 18 6 14.2256 0.9964 -0.4368 19 1 13.5709 1.4392 -1.1729 20 6 15.5931 1.0770 -0.5931 21 7 16.1003 1.6918 -1.6393 22 14 16.7254 0.3118 0.6803 23 1 17.0148 -1.0953 0.3036 24 1 17.9951 1.0796 0.7389 25 1 16.0665 0.3425 2.0107 26 6 7.3050 -0.0865 1.6941 27 6 6.2481 -1.0463 1.1207 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6053 -1.7197 1.2953 36 1 1.7515 -0.1582 2.1370 37 1 6.6021 -3.1457 2.9947 38 1 5.3946 -2.4848 4.1255 39 1 7.8165 -1.8199 4.6184 40 1 6.6856 -0.4555 4.4368 41 1 9.6270 0.1264 1.1031 42 1 11.8682 0.1204 2.8217 43 1 11.8533 -1.4106 1.9139 44 1 11.7755 -0.1451 -0.2174 45 1 11.7902 1.3855 0.6909 46 1 13.9854 0.7824 1.6732 47 1 13.9713 -0.7484 0.7650 48 1 17.0623 1.7482 -1.7494 49 1 6.8217 0.8219 2.0535 50 1 8.0315 0.1638 0.9211 51 1 6.7402 -1.8719 0.6068 52 1 5.6065 -0.5104 0.4211 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491170233.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:25 Heat of formation + Delta-G solvation = -113.600378 kcal Electronic energy + Delta-G solvation = -29831.264131 eV Core-core repulsion = 25637.949879 eV Total energy + Delta-G solvation = -4193.314252 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.17052 -40.23910 -38.25368 -37.01177 -35.62522 -35.47211 -34.37744 -33.35079 -31.96267 -31.17983 -28.59358 -27.68521 -27.28359 -26.56390 -24.39172 -23.53052 -22.60148 -21.08598 -20.84762 -20.59129 -19.64830 -18.81040 -17.69798 -17.24076 -17.06527 -16.79765 -16.29934 -15.90620 -15.67041 -15.33893 -14.81605 -14.74997 -14.65984 -14.50001 -14.24615 -13.87941 -13.78211 -13.50762 -13.15582 -13.02684 -12.88039 -12.71009 -12.63643 -12.08955 -12.03143 -12.02444 -11.84974 -11.75401 -11.65871 -11.63359 -11.27239 -11.07098 -10.91836 -10.91079 -10.85189 -10.30817 -10.03267 -9.85528 -9.70886 -9.67870 -9.24578 -9.00251 -8.57201 -8.55321 -6.07830 -4.06644 1.61956 2.41406 2.51735 3.16688 3.30507 3.33983 3.38233 3.42490 3.78746 4.22269 4.28874 4.31298 4.43276 4.45108 4.57094 4.60938 4.70756 4.87753 4.90032 4.94347 5.01834 5.11515 5.12601 5.16235 5.26415 5.32763 5.33346 5.37167 5.38761 5.50652 5.53969 5.55939 5.65704 5.66048 5.78962 5.89224 5.96191 6.00308 6.15434 6.34115 6.43650 6.61597 6.78326 6.80407 6.89720 7.21215 7.34654 7.73796 7.85887 7.90271 8.48133 8.56414 8.95739 9.54484 11.05333 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017314 B = 0.001809 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.841060 B =15471.500621 C =16862.367051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.148 4.148 4 C 0.091 3.909 5 O -0.366 6.366 6 C 0.652 3.348 7 O -0.573 6.573 8 N -0.593 5.593 9 C 0.113 3.887 10 C 0.117 3.883 11 N -0.636 5.636 12 C 0.706 3.294 13 O -0.588 6.588 14 N -0.741 5.741 15 C 0.131 3.869 16 C -0.113 4.113 17 C -0.011 4.011 18 C -0.522 4.522 19 H 0.072 0.928 20 C 0.067 3.933 21 N -0.903 5.903 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.264 1.264 26 C 0.098 3.902 27 C 0.098 3.902 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.394 0.606 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.019 0.981 47 H 0.015 0.985 48 H 0.263 0.737 49 H 0.076 0.924 50 H 0.094 0.906 51 H 0.079 0.921 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.126 -3.891 4.961 32.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.205 4.205 4 C 0.016 3.984 5 O -0.280 6.280 6 C 0.407 3.593 7 O -0.462 6.462 8 N -0.334 5.334 9 C -0.009 4.009 10 C -0.008 4.008 11 N -0.375 5.375 12 C 0.408 3.592 13 O -0.466 6.466 14 N -0.397 5.397 15 C 0.008 3.992 16 C -0.151 4.151 17 C -0.049 4.049 18 C -0.560 4.560 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.542 5.542 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.189 1.189 26 C -0.027 4.027 27 C -0.026 4.026 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.089 0.911 41 H 0.230 0.770 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.037 0.963 47 H 0.033 0.967 48 H 0.073 0.927 49 H 0.094 0.906 50 H 0.112 0.888 51 H 0.097 0.903 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -31.788 -4.405 5.794 32.610 hybrid contribution 0.444 -0.104 0.122 0.472 sum -31.343 -4.510 5.916 32.214 Atomic orbital electron populations 1.21779 0.93480 1.02395 1.02709 1.21193 0.96017 0.97068 0.97233 1.21836 1.01887 0.94830 1.01975 1.23123 0.74656 1.01290 0.99286 1.86194 1.24499 1.73022 1.44315 1.17969 0.82943 0.77455 0.80947 1.90993 1.64131 1.53738 1.37358 1.46817 1.02387 1.60512 1.23692 1.22129 0.94916 0.95035 0.88805 1.21853 0.92342 0.97623 0.88937 1.47214 1.04638 1.62462 1.23139 1.15882 0.80703 0.79920 0.82728 1.90913 1.70656 1.45830 1.39219 1.45512 1.07966 1.60524 1.25698 1.21548 0.76160 1.01350 1.00123 1.21707 0.98783 0.99422 0.95174 1.19502 0.90469 0.96958 0.97964 1.21091 0.92245 1.35702 1.06996 0.91019 1.25026 0.98280 0.94811 0.95349 1.69912 1.12369 1.43337 1.28550 0.86776 0.80239 0.79486 0.82806 1.20243 1.21374 1.18879 1.22117 0.95419 0.95391 0.89776 1.22250 0.93630 0.98223 0.88472 0.92197 0.91475 0.92228 0.89902 0.92267 0.92633 0.91856 0.91167 0.91096 0.90224 0.87398 0.87125 0.91143 0.77002 0.91960 0.91806 0.92147 0.92145 0.96271 0.96686 0.92697 0.90556 0.88754 0.90269 0.87689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.19 37.16 0.34 -0.21 16 2 C -0.10 -0.48 3.17 -90.62 -0.29 -0.77 16 3 C -0.15 -0.73 9.09 37.16 0.34 -0.39 16 4 C 0.09 0.63 4.85 37.16 0.18 0.81 16 5 O -0.37 -3.14 8.39 -40.32 -0.34 -3.48 16 6 C 0.65 6.75 8.43 54.06 0.46 7.20 16 7 O -0.57 -7.50 15.54 -19.27 -0.30 -7.80 16 8 N -0.59 -5.18 2.95 -177.98 -0.52 -5.70 16 9 C 0.11 0.96 6.59 -3.60 -0.02 0.94 16 10 C 0.12 1.08 6.60 -3.59 -0.02 1.06 16 11 N -0.64 -6.59 2.94 -177.92 -0.52 -7.11 16 12 C 0.71 9.99 8.29 -86.93 -0.72 9.27 16 13 O -0.59 -10.66 15.76 5.29 0.08 -10.57 16 14 N -0.74 -9.83 5.47 -65.23 -0.36 -10.19 16 15 C 0.13 2.12 5.68 -4.04 -0.02 2.10 16 16 C -0.11 -2.03 5.27 -26.73 -0.14 -2.17 16 17 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 18 C -0.52 -14.50 9.66 -34.44 -0.33 -14.83 16 19 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 20 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 21 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 22 Si 0.88 21.55 27.47 -169.99 -4.67 16.89 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 26 C 0.10 0.70 6.59 -3.34 -0.02 0.68 16 27 C 0.10 0.66 6.63 -3.34 -0.02 0.64 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.36 7.82 -51.93 -0.41 -0.05 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.11 0.93 7.00 -51.93 -0.36 0.57 16 39 H 0.11 1.15 6.99 -51.93 -0.36 0.79 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.39 4.12 5.94 -40.82 -0.24 3.88 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 47 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 48 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.09 0.57 5.61 -51.93 -0.29 0.28 16 51 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.10 0.58 6.91 -51.93 -0.36 0.22 16 LS Contribution 414.37 15.07 6.24 6.24 Total: -1.00 -35.17 414.37 -9.24 -44.41 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -9.14 Total: -1.77 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -0.49 Total: 5.78 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -0.63 Total: -49.69 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.55 Total: -21.86 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.17 -9.24 -44.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491170233.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.186 kcal (2) G-P(sol) polarization free energy of solvation -35.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds