Wall clock time and date at job start Wed Apr 1 2020 00:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46897 * 2 1 4 4 C 1.53009 * 109.46715 * 119.99643 * 2 1 3 5 5 O 1.45198 * 109.46793 * 175.00217 * 4 2 1 6 6 C 1.34637 * 116.99895 * 179.97438 * 5 4 2 7 7 O 1.21503 * 120.00073 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99827 * 179.97438 * 6 5 4 9 9 C 1.46964 * 120.59251 * 180.02562 * 8 6 5 10 10 C 1.53373 * 108.63559 * 235.25542 * 9 8 6 11 11 N 1.46967 * 108.63035 * 310.57273 * 10 9 8 12 12 C 1.34776 * 120.59585 * 235.20332 * 11 10 9 13 13 O 1.21586 * 119.99857 * 5.21095 * 12 11 10 14 14 N 1.34768 * 120.00303 * 184.93414 * 12 11 10 15 15 C 1.46500 * 120.00523 * 175.28538 * 14 12 11 16 16 C 1.52997 * 109.47316 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.46857 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47183 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99743 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00050 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99870 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00129 * 0.02562 * 20 18 17 23 23 H 1.48509 * 109.46933 * 89.99769 * 22 20 18 24 24 H 1.48495 * 109.47367 * 209.99631 * 22 20 18 25 25 H 1.48496 * 109.47005 * 330.00051 * 22 20 18 26 26 C 1.46964 * 118.81267 * 55.48425 * 11 10 9 27 27 C 1.46966 * 120.59588 * 0.02980 * 8 6 5 28 28 H 1.09005 * 109.47296 * 300.00622 * 1 2 3 29 29 H 1.08995 * 109.46871 * 60.00324 * 1 2 3 30 30 H 1.09002 * 109.47460 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47085 * 239.99430 * 2 1 3 32 32 H 1.08995 * 109.47095 * 299.99539 * 3 2 1 33 33 H 1.08991 * 109.47719 * 59.99817 * 3 2 1 34 34 H 1.09006 * 109.47070 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.47000 * 55.00001 * 4 2 1 36 36 H 1.08999 * 109.46700 * 294.99786 * 4 2 1 37 37 H 1.08999 * 109.60839 * 115.50822 * 9 8 6 38 38 H 1.08999 * 109.75195 * 355.07941 * 9 8 6 39 39 H 1.08996 * 109.60832 * 190.83632 * 10 9 8 40 40 H 1.08997 * 109.75151 * 70.40039 * 10 9 8 41 41 H 0.97002 * 120.00131 * 355.28161 * 14 12 11 42 42 H 1.09007 * 109.46761 * 299.99927 * 15 14 12 43 43 H 1.09000 * 109.47106 * 59.99714 * 15 14 12 44 44 H 1.08993 * 109.46885 * 299.99472 * 16 15 14 45 45 H 1.09000 * 109.47403 * 59.99729 * 16 15 14 46 46 H 1.09007 * 109.47020 * 299.99636 * 17 16 15 47 47 H 1.09000 * 109.47307 * 59.99705 * 17 16 15 48 48 H 0.96997 * 119.99843 * 180.02562 * 21 20 18 49 49 H 1.08996 * 109.61024 * 64.25889 * 26 11 10 50 50 H 1.08995 * 109.61287 * 184.77345 * 26 11 10 51 51 H 1.08992 * 109.60802 * 244.49519 * 27 8 6 52 52 H 1.09005 * 109.60644 * 4.83195 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 8 3.4870 -0.8254 1.1913 6 6 4.0976 -1.4381 2.2230 7 8 3.4393 -1.8743 3.1464 8 7 5.4391 -1.5686 2.2310 9 6 6.1191 -2.2355 3.3502 10 6 7.1754 -1.2811 3.9207 11 7 7.9844 -0.7585 2.8106 12 6 9.3259 -0.8881 2.8191 13 8 9.8698 -1.5233 3.7017 14 7 10.0641 -0.3183 1.8461 15 6 11.5268 -0.3707 1.9104 16 6 12.1168 0.3456 0.6940 17 6 13.6444 0.2914 0.7616 18 6 14.2256 0.9964 -0.4368 19 1 13.5709 1.4392 -1.1729 20 6 15.5931 1.0770 -0.5931 21 7 16.1003 1.6918 -1.6393 22 14 16.7254 0.3118 0.6803 23 1 17.0148 -1.0953 0.3036 24 1 17.9951 1.0796 0.7389 25 1 16.0665 0.3425 2.0107 26 6 7.3050 -0.0865 1.6941 27 6 6.2481 -1.0463 1.1207 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6053 -1.7197 1.2953 36 1 1.7515 -0.1582 2.1370 37 1 6.6021 -3.1457 2.9947 38 1 5.3946 -2.4848 4.1255 39 1 7.8165 -1.8199 4.6184 40 1 6.6856 -0.4555 4.4368 41 1 9.6270 0.1264 1.1031 42 1 11.8682 0.1204 2.8217 43 1 11.8533 -1.4106 1.9139 44 1 11.7755 -0.1451 -0.2174 45 1 11.7902 1.3855 0.6909 46 1 13.9854 0.7824 1.6732 47 1 13.9713 -0.7484 0.7650 48 1 17.0623 1.7482 -1.7494 49 1 6.8217 0.8219 2.0535 50 1 8.0315 0.1638 0.9211 51 1 6.7402 -1.8719 0.6068 52 1 5.6065 -0.5104 0.4211 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491170233.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:25 Heat of formation + Delta-G solvation = -136.181740 kcal Electronic energy + Delta-G solvation = -29832.243332 eV Core-core repulsion = 25637.949879 eV Total energy + Delta-G solvation = -4194.293453 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.95692 -41.19142 -39.02417 -37.78524 -36.99277 -36.01892 -35.37706 -34.99836 -33.34094 -32.30495 -29.58156 -28.54088 -28.02916 -27.36428 -25.22035 -24.65201 -23.77311 -22.19364 -21.91810 -21.28936 -20.56994 -19.76333 -18.92407 -18.41633 -17.98642 -17.76908 -17.36882 -16.96858 -16.35167 -16.19990 -15.98020 -15.95470 -15.50583 -15.32121 -15.11349 -15.06752 -14.74405 -14.65055 -14.24736 -13.81553 -13.76490 -13.61687 -13.56890 -13.40545 -12.97501 -12.80901 -12.69467 -12.68562 -12.53340 -12.46279 -12.14752 -12.07156 -11.89236 -11.76430 -11.74526 -11.59875 -11.56745 -11.48911 -11.30732 -11.22405 -10.73987 -10.53403 -10.10436 -9.40523 -8.27380 -6.30817 0.92519 1.38475 1.40367 1.51810 1.58745 1.62477 2.08277 2.38113 2.72188 2.86531 3.08703 3.68407 3.74015 3.80705 3.86404 3.96618 4.08482 4.13438 4.15445 4.22897 4.26930 4.31548 4.43893 4.49522 4.54244 4.60451 4.61578 4.64931 4.75080 4.80934 4.88970 4.92533 4.93728 4.99821 5.01021 5.07078 5.16728 5.20969 5.22105 5.38555 5.41375 5.43014 5.45345 5.54008 5.59404 5.67457 5.82547 6.15141 6.29778 6.77238 6.90823 7.10023 7.34058 7.49646 8.88828 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017314 B = 0.001809 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.841060 B =15471.500621 C =16862.367051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.147 4.147 4 C 0.087 3.913 5 O -0.362 6.362 6 C 0.650 3.350 7 O -0.606 6.606 8 N -0.591 5.591 9 C 0.120 3.880 10 C 0.119 3.881 11 N -0.629 5.629 12 C 0.704 3.296 13 O -0.632 6.632 14 N -0.731 5.731 15 C 0.146 3.854 16 C -0.099 4.099 17 C -0.013 4.013 18 C -0.529 4.529 19 H 0.039 0.961 20 C 0.005 3.995 21 N -0.950 5.950 22 Si 0.945 3.055 23 H -0.268 1.268 24 H -0.286 1.286 25 H -0.248 1.248 26 C 0.096 3.904 27 C 0.100 3.900 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.409 0.591 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.020 0.980 47 H 0.019 0.981 48 H 0.265 0.735 49 H 0.088 0.912 50 H 0.110 0.890 51 H 0.084 0.916 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.297 -4.050 5.205 33.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.205 4.205 4 C 0.013 3.987 5 O -0.275 6.275 6 C 0.405 3.595 7 O -0.497 6.497 8 N -0.331 5.331 9 C -0.002 4.002 10 C -0.004 4.004 11 N -0.366 5.366 12 C 0.406 3.594 13 O -0.513 6.513 14 N -0.389 5.389 15 C 0.021 3.979 16 C -0.137 4.137 17 C -0.051 4.051 18 C -0.567 4.567 19 H 0.058 0.942 20 C -0.192 4.192 21 N -0.591 5.591 22 Si 0.769 3.231 23 H -0.193 1.193 24 H -0.212 1.212 25 H -0.171 1.171 26 C -0.028 4.028 27 C -0.023 4.023 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.248 0.752 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.039 0.961 47 H 0.038 0.962 48 H 0.074 0.926 49 H 0.107 0.893 50 H 0.128 0.872 51 H 0.102 0.898 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -33.015 -4.541 5.999 33.861 hybrid contribution 0.703 -0.005 -0.031 0.703 sum -32.312 -4.546 5.968 33.172 Atomic orbital electron populations 1.21784 0.92459 1.02749 1.03224 1.21192 0.96747 0.96821 0.96145 1.21833 1.01433 0.94807 1.02386 1.23302 0.73821 1.01351 1.00224 1.86207 1.25348 1.72506 1.43470 1.18128 0.83290 0.77225 0.80843 1.90970 1.64964 1.55159 1.38630 1.46910 1.02092 1.60073 1.24066 1.22038 0.94484 0.94846 0.88879 1.21866 0.92017 0.97969 0.88588 1.47238 1.03490 1.61856 1.24057 1.15988 0.81739 0.79563 0.82158 1.90887 1.71874 1.47710 1.40829 1.45217 1.06839 1.60612 1.26241 1.21162 0.77760 1.00342 0.98597 1.21470 0.95617 1.00211 0.96382 1.19472 0.93672 0.96319 0.95626 1.21472 0.92136 1.35262 1.07818 0.94228 1.25959 1.00240 0.95501 0.97482 1.70056 1.12867 1.45325 1.30829 0.85727 0.77987 0.78708 0.80665 1.19347 1.21164 1.17121 1.22351 0.95691 0.95591 0.89140 1.22369 0.93451 0.98426 0.88015 0.92119 0.90520 0.91999 0.89680 0.91355 0.92751 0.92532 0.91524 0.91575 0.90007 0.87617 0.88369 0.90218 0.75219 0.92745 0.92626 0.91541 0.91607 0.96122 0.96228 0.92581 0.89346 0.87198 0.89776 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.19 71.98 0.66 -0.20 16 2 C -0.09 -0.77 3.17 -10.79 -0.03 -0.80 16 3 C -0.15 -1.22 9.09 71.98 0.65 -0.57 16 4 C 0.09 1.14 4.85 71.99 0.35 1.49 16 5 O -0.36 -5.71 8.39 -55.46 -0.47 -6.18 16 6 C 0.65 12.74 8.43 129.79 1.09 13.83 16 7 O -0.61 -15.63 15.54 19.83 0.31 -15.32 16 8 N -0.59 -9.35 2.95 -947.41 -2.79 -12.14 16 9 C 0.12 1.91 6.59 86.42 0.57 2.48 16 10 C 0.12 2.08 6.60 86.42 0.57 2.65 16 11 N -0.63 -11.87 2.94 -835.09 -2.46 -14.32 16 12 C 0.70 18.83 8.29 179.06 1.49 20.32 16 13 O -0.63 -22.48 15.76 -3.99 -0.06 -22.54 16 14 N -0.73 -17.88 5.47 -478.55 -2.62 -20.49 16 15 C 0.15 4.45 5.68 86.38 0.49 4.94 16 16 C -0.10 -3.39 5.27 30.59 0.16 -3.23 16 17 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 18 C -0.53 -29.41 9.66 25.60 0.25 -29.17 16 19 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 20 C 0.01 0.29 5.47 84.65 0.46 0.75 16 21 N -0.95 -58.66 13.96 21.45 0.30 -58.36 16 22 Si 0.95 43.91 27.47 68.60 1.88 45.80 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 26 C 0.10 1.11 6.59 86.58 0.57 1.68 16 27 C 0.10 1.09 6.63 86.58 0.57 1.67 16 28 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.55 7.82 -2.38 -0.02 0.53 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.11 1.78 7.00 -2.39 -0.02 1.76 16 39 H 0.10 2.01 6.99 -2.39 -0.02 2.00 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.41 7.40 5.94 -92.71 -0.55 6.85 16 42 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 43 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.02 0.91 7.20 -2.38 -0.02 0.89 16 47 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 48 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 49 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.11 0.95 5.61 -2.39 -0.01 0.94 16 51 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 52 H 0.12 0.98 6.91 -2.38 -0.02 0.97 16 Total: -1.00 -76.17 414.37 2.37 -73.80 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.29 Total: 14.38 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 7.98 Total: 15.39 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -7.56 Total: -105.32 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -0.22 Total: -44.04 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.80 kcal Total: -76.17 2.37 -73.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491170233.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.384 kcal (2) G-P(sol) polarization free energy of solvation -76.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds