Wall clock time and date at job start Wed Apr 1 2020 00:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47123 * 2 1 4 4 C 1.53004 * 109.47201 * 240.00206 * 2 1 3 5 5 O 1.45201 * 109.47345 * 120.00224 * 2 1 3 6 6 C 1.34630 * 117.00046 * 59.99605 * 5 2 1 7 7 O 1.21516 * 120.00250 * 0.02562 * 6 5 2 8 8 N 1.34784 * 120.00065 * 180.02562 * 6 5 2 9 9 C 1.46493 * 119.99864 * 179.72923 * 8 6 5 10 10 C 1.53001 * 109.47084 * 180.02562 * 9 8 6 11 11 H 1.09003 * 109.46949 * 294.99717 * 10 9 8 12 12 N 1.46499 * 109.47392 * 54.99694 * 10 9 8 13 13 C 1.34776 * 119.99921 * 205.00705 * 12 10 9 14 14 O 1.21587 * 120.00257 * 359.97438 * 13 12 10 15 15 N 1.34774 * 119.99752 * 180.02562 * 13 12 10 16 16 C 1.46502 * 120.00070 * 179.97438 * 15 13 12 17 17 C 1.52994 * 109.47168 * 179.97438 * 16 15 13 18 18 C 1.50705 * 109.47310 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99388 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00531 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00480 * 180.02562 * 20 18 17 22 22 Si 1.86811 * 119.99674 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47223 * 89.99901 * 22 20 18 24 24 H 1.48504 * 109.46989 * 210.00102 * 22 20 18 25 25 H 1.48500 * 109.46885 * 329.99888 * 22 20 18 26 26 C 1.52997 * 109.47519 * 175.00001 * 10 9 8 27 27 C 1.53003 * 117.50025 * 248.74690 * 26 10 9 28 28 C 1.52997 * 117.50117 * 180.08541 * 26 10 9 29 29 H 1.09004 * 109.46522 * 299.99848 * 1 2 3 30 30 H 1.08993 * 109.46822 * 59.99709 * 1 2 3 31 31 H 1.08997 * 109.46645 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47093 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47004 * 299.99872 * 3 2 1 34 34 H 1.08997 * 109.47133 * 59.99999 * 3 2 1 35 35 H 1.09006 * 109.46751 * 299.99920 * 4 2 1 36 36 H 1.08994 * 109.46964 * 59.99535 * 4 2 1 37 37 H 1.08998 * 109.47138 * 180.02562 * 4 2 1 38 38 H 0.97000 * 119.99339 * 0.02562 * 8 6 5 39 39 H 1.09007 * 109.47196 * 299.99538 * 9 8 6 40 40 H 1.09006 * 109.47678 * 59.99732 * 9 8 6 41 41 H 0.97000 * 119.99498 * 24.99864 * 12 10 9 42 42 H 0.97002 * 120.00280 * 359.97438 * 15 13 12 43 43 H 1.09002 * 109.46796 * 299.99622 * 16 15 13 44 44 H 1.08997 * 109.47483 * 59.99598 * 16 15 13 45 45 H 1.09002 * 109.47140 * 299.99639 * 17 16 15 46 46 H 1.09005 * 109.47428 * 60.00068 * 17 16 15 47 47 H 0.96997 * 120.00017 * 180.02562 * 21 20 18 48 48 H 1.09006 * 115.54757 * 34.41089 * 26 10 9 49 49 H 1.09001 * 117.49296 * 359.97438 * 27 26 10 50 50 H 1.08991 * 117.50309 * 145.01577 * 27 26 10 51 51 H 1.08999 * 117.49717 * 214.97918 * 28 26 10 52 52 H 1.08993 * 117.49842 * 359.97328 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5036 8 7 2.0673 -2.6654 2.4172 9 6 1.6688 -4.0649 2.5864 10 6 2.2690 -4.6130 3.8826 11 1 3.3558 -4.6306 3.8008 12 7 1.8775 -3.7545 5.0033 13 6 2.6407 -3.7052 6.1130 14 8 3.6539 -4.3735 6.1843 15 7 2.2802 -2.9158 7.1442 16 6 3.1095 -2.8625 8.3508 17 6 2.4816 -1.8982 9.3590 18 6 3.3344 -1.8439 10.6004 19 1 4.2344 -2.4375 10.6636 20 6 2.9662 -1.0356 11.6550 21 7 3.7106 -0.9878 12.7381 22 14 1.4097 -0.0083 11.5453 23 1 0.2617 -0.7917 12.0683 24 1 1.5745 1.2275 12.3521 25 1 1.1559 0.3558 10.1281 26 6 1.7527 -6.0330 4.1234 27 6 0.7984 -6.2478 5.2999 28 6 2.2393 -6.7581 5.3796 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 2.6264 -2.2363 3.0836 39 1 0.5817 -4.1299 2.6338 40 1 2.0312 -4.6507 1.7416 41 1 1.0690 -3.2216 4.9465 42 1 1.4717 -2.3829 7.0876 43 1 3.1746 -3.8575 8.7911 44 1 4.1090 -2.5147 8.0897 45 1 2.4169 -0.9033 8.9185 46 1 1.4820 -2.2457 9.6203 47 1 3.4513 -0.4195 13.4801 48 1 1.5900 -6.6322 3.2275 49 1 0.5387 -5.3774 5.9026 50 1 0.0082 -6.9885 5.1782 51 1 2.3964 -7.8345 5.3103 52 1 2.9276 -6.2238 6.0343 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495251266.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:56 Heat of formation + Delta-G solvation = -92.005526 kcal Electronic energy + Delta-G solvation = -30433.308406 eV Core-core repulsion = 26240.930577 eV Total energy + Delta-G solvation = -4192.377829 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.09090 -40.32720 -38.10407 -37.30779 -35.33995 -34.93476 -34.35714 -33.43316 -32.70139 -30.41998 -29.13946 -27.74300 -27.71213 -25.01739 -24.23263 -22.44112 -22.02115 -21.36852 -20.79122 -20.47535 -19.95453 -18.64275 -18.00476 -17.01651 -16.90152 -16.62194 -16.36253 -16.15730 -15.45898 -14.93244 -14.85202 -14.69958 -14.37228 -14.15366 -14.09922 -13.83704 -13.70515 -13.34577 -12.94530 -12.82181 -12.62642 -12.51530 -12.33701 -12.23290 -12.20570 -12.01962 -11.75792 -11.63572 -11.53163 -11.46407 -11.21435 -10.67936 -10.48031 -10.41417 -10.34393 -10.27249 -10.09129 -9.99538 -9.80873 -9.52500 -9.34734 -9.11520 -8.64882 -8.47916 -6.12531 -4.12747 1.85252 2.55782 2.79865 3.23689 3.31438 3.32426 3.36888 3.72555 3.85768 4.24851 4.36028 4.37102 4.42116 4.46337 4.55954 4.73300 4.85752 4.99757 5.07715 5.12073 5.14068 5.19836 5.20403 5.26918 5.35320 5.36045 5.45494 5.51133 5.61722 5.65527 5.68257 5.79666 5.89510 5.94146 6.03268 6.06346 6.08536 6.20763 6.24466 6.39038 6.44303 6.55447 6.77346 6.95514 7.10009 7.21274 7.23462 7.65402 8.08946 8.19744 8.43232 8.80581 8.92106 9.47537 11.00486 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009219 B = 0.002566 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.394812 B =10909.334837 C =13215.834214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.142 4.142 4 C -0.183 4.183 5 O -0.364 6.364 6 C 0.651 3.349 7 O -0.570 6.570 8 N -0.710 5.710 9 C 0.134 3.866 10 C 0.186 3.814 11 H 0.101 0.899 12 N -0.750 5.750 13 C 0.701 3.299 14 O -0.586 6.586 15 N -0.740 5.740 16 C 0.149 3.851 17 C -0.021 4.021 18 C -0.522 4.522 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.898 5.898 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.267 1.267 26 C -0.174 4.174 27 C -0.173 4.173 28 C -0.177 4.177 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.410 0.590 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.396 0.604 42 H 0.391 0.609 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.021 0.979 46 H 0.017 0.983 47 H 0.265 0.735 48 H 0.110 0.890 49 H 0.095 0.905 50 H 0.088 0.912 51 H 0.087 0.913 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.015 -1.760 -27.959 29.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.278 6.278 6 C 0.404 3.596 7 O -0.459 6.459 8 N -0.370 5.370 9 C 0.011 3.989 10 C 0.079 3.921 11 H 0.119 0.881 12 N -0.407 5.407 13 C 0.401 3.599 14 O -0.464 6.464 15 N -0.394 5.394 16 C 0.026 3.974 17 C -0.059 4.059 18 C -0.561 4.561 19 H 0.094 0.906 20 C -0.133 4.133 21 N -0.536 5.536 22 Si 0.709 3.291 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.191 1.191 26 C -0.194 4.194 27 C -0.210 4.210 28 C -0.214 4.214 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.246 0.754 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.229 0.771 42 H 0.224 0.776 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.039 0.961 46 H 0.035 0.965 47 H 0.075 0.925 48 H 0.128 0.872 49 H 0.113 0.887 50 H 0.106 0.894 51 H 0.105 0.895 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.373 -2.480 -28.140 29.195 hybrid contribution -1.424 1.241 0.309 1.914 sum -8.798 -1.240 -27.831 29.214 Atomic orbital electron populations 1.22517 0.93948 1.05026 1.02569 1.22085 0.94381 0.91564 0.81995 1.21874 1.02378 0.92468 1.03213 1.22517 1.01615 1.03449 0.96469 1.86329 1.71452 1.23531 1.46505 1.18061 0.78791 0.80581 0.82144 1.90902 1.41231 1.70518 1.43297 1.44702 1.55721 1.12673 1.23875 1.21632 1.00707 0.79357 0.97175 1.20474 1.00707 0.87688 0.83208 0.88114 1.45269 1.29002 1.49791 1.16651 1.16006 0.83174 0.80741 0.80005 1.90858 1.26616 1.47302 1.81630 1.45565 1.29389 1.47304 1.17109 1.21384 0.93455 1.00692 0.81856 1.19793 0.96826 0.94467 0.94844 1.20907 1.10205 1.27022 0.97933 0.90589 1.24999 0.96787 0.96388 0.95103 1.69903 1.38472 1.39560 1.05703 0.86754 0.83797 0.80096 0.78405 1.20259 1.21294 1.19127 1.22583 1.06251 0.96494 0.94039 1.22910 0.93535 1.03343 1.01208 1.23395 0.97878 1.00043 1.00073 0.92095 0.91139 0.89400 0.91385 0.90115 0.91337 0.89400 0.91138 0.92137 0.75408 0.90324 0.89509 0.77050 0.77578 0.92105 0.92084 0.96069 0.96515 0.92543 0.87182 0.88699 0.89359 0.89479 0.85724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 8.37 37.16 0.31 -1.19 16 2 C 0.14 1.17 1.13 -90.61 -0.10 1.06 16 3 C -0.14 -0.92 8.85 37.16 0.33 -0.59 16 4 C -0.18 -1.49 8.37 37.16 0.31 -1.17 16 5 O -0.36 -3.80 9.94 -40.30 -0.40 -4.20 16 6 C 0.65 7.00 8.06 54.06 0.44 7.44 16 7 O -0.57 -7.05 11.88 -19.28 -0.23 -7.28 16 8 N -0.71 -6.24 5.39 -65.28 -0.35 -6.59 16 9 C 0.13 1.04 5.21 -4.04 -0.02 1.02 16 10 C 0.19 1.68 2.59 -67.93 -0.18 1.50 16 11 H 0.10 1.09 7.58 -51.93 -0.39 0.69 16 12 N -0.75 -7.45 3.05 -58.68 -0.18 -7.63 16 13 C 0.70 10.13 7.40 -86.92 -0.64 9.48 16 14 O -0.59 -10.62 13.37 5.29 0.07 -10.55 16 15 N -0.74 -11.17 5.56 -65.23 -0.36 -11.53 16 16 C 0.15 2.90 5.61 -4.04 -0.02 2.88 16 17 C -0.02 -0.48 4.16 -27.88 -0.12 -0.59 16 18 C -0.52 -14.38 9.66 -34.44 -0.33 -14.71 16 19 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 20 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 21 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 22 Si 0.88 20.79 27.47 -169.99 -4.67 16.12 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 26 C -0.17 -1.60 5.70 -90.62 -0.52 -2.11 16 27 C -0.17 -1.76 9.74 -26.69 -0.26 -2.02 16 28 C -0.18 -2.08 9.82 -26.69 -0.26 -2.34 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.90 5.88 -51.93 -0.31 0.59 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.89 5.88 -51.93 -0.31 0.58 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.41 3.53 8.24 -40.82 -0.34 3.19 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.40 3.17 8.62 -40.82 -0.35 2.82 16 42 H 0.39 4.92 8.49 -40.82 -0.35 4.58 16 43 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 46 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.11 0.82 8.11 -51.93 -0.42 0.40 16 49 H 0.09 1.05 6.67 -51.93 -0.35 0.71 16 50 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 51 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 52 H 0.12 1.90 5.01 -51.93 -0.26 1.64 16 LS Contribution 412.93 15.07 6.22 6.22 Total: -1.00 -32.62 412.93 -9.21 -41.82 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -8.92 Total: 9.42 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -1.16 Total: 0.51 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.12 Total: -52.07 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.56 Total: -22.03 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.67 Total: 16.12 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.62 -9.21 -41.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495251266.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.181 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds