Wall clock time and date at job start Wed Apr 1 2020 00:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47123 * 2 1 4 4 C 1.53004 * 109.47201 * 240.00206 * 2 1 3 5 5 O 1.45201 * 109.47345 * 120.00224 * 2 1 3 6 6 C 1.34630 * 117.00046 * 59.99605 * 5 2 1 7 7 O 1.21516 * 120.00250 * 0.02562 * 6 5 2 8 8 N 1.34784 * 120.00065 * 180.02562 * 6 5 2 9 9 C 1.46493 * 119.99864 * 179.72923 * 8 6 5 10 10 C 1.53001 * 109.47084 * 180.02562 * 9 8 6 11 11 H 1.09003 * 109.46949 * 294.99717 * 10 9 8 12 12 N 1.46499 * 109.47392 * 54.99694 * 10 9 8 13 13 C 1.34776 * 119.99921 * 205.00705 * 12 10 9 14 14 O 1.21587 * 120.00257 * 359.97438 * 13 12 10 15 15 N 1.34774 * 119.99752 * 180.02562 * 13 12 10 16 16 C 1.46502 * 120.00070 * 179.97438 * 15 13 12 17 17 C 1.52994 * 109.47168 * 179.97438 * 16 15 13 18 18 C 1.50705 * 109.47310 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99388 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00531 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00480 * 180.02562 * 20 18 17 22 22 Si 1.86811 * 119.99674 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47223 * 89.99901 * 22 20 18 24 24 H 1.48504 * 109.46989 * 210.00102 * 22 20 18 25 25 H 1.48500 * 109.46885 * 329.99888 * 22 20 18 26 26 C 1.52997 * 109.47519 * 175.00001 * 10 9 8 27 27 C 1.53003 * 117.50025 * 248.74690 * 26 10 9 28 28 C 1.52997 * 117.50117 * 180.08541 * 26 10 9 29 29 H 1.09004 * 109.46522 * 299.99848 * 1 2 3 30 30 H 1.08993 * 109.46822 * 59.99709 * 1 2 3 31 31 H 1.08997 * 109.46645 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47093 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47004 * 299.99872 * 3 2 1 34 34 H 1.08997 * 109.47133 * 59.99999 * 3 2 1 35 35 H 1.09006 * 109.46751 * 299.99920 * 4 2 1 36 36 H 1.08994 * 109.46964 * 59.99535 * 4 2 1 37 37 H 1.08998 * 109.47138 * 180.02562 * 4 2 1 38 38 H 0.97000 * 119.99339 * 0.02562 * 8 6 5 39 39 H 1.09007 * 109.47196 * 299.99538 * 9 8 6 40 40 H 1.09006 * 109.47678 * 59.99732 * 9 8 6 41 41 H 0.97000 * 119.99498 * 24.99864 * 12 10 9 42 42 H 0.97002 * 120.00280 * 359.97438 * 15 13 12 43 43 H 1.09002 * 109.46796 * 299.99622 * 16 15 13 44 44 H 1.08997 * 109.47483 * 59.99598 * 16 15 13 45 45 H 1.09002 * 109.47140 * 299.99639 * 17 16 15 46 46 H 1.09005 * 109.47428 * 60.00068 * 17 16 15 47 47 H 0.96997 * 120.00017 * 180.02562 * 21 20 18 48 48 H 1.09006 * 115.54757 * 34.41089 * 26 10 9 49 49 H 1.09001 * 117.49296 * 359.97438 * 27 26 10 50 50 H 1.08991 * 117.50309 * 145.01577 * 27 26 10 51 51 H 1.08999 * 117.49717 * 214.97918 * 28 26 10 52 52 H 1.08993 * 117.49842 * 359.97328 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5036 8 7 2.0673 -2.6654 2.4172 9 6 1.6688 -4.0649 2.5864 10 6 2.2690 -4.6130 3.8826 11 1 3.3558 -4.6306 3.8008 12 7 1.8775 -3.7545 5.0033 13 6 2.6407 -3.7052 6.1130 14 8 3.6539 -4.3735 6.1843 15 7 2.2802 -2.9158 7.1442 16 6 3.1095 -2.8625 8.3508 17 6 2.4816 -1.8982 9.3590 18 6 3.3344 -1.8439 10.6004 19 1 4.2344 -2.4375 10.6636 20 6 2.9662 -1.0356 11.6550 21 7 3.7106 -0.9878 12.7381 22 14 1.4097 -0.0083 11.5453 23 1 0.2617 -0.7917 12.0683 24 1 1.5745 1.2275 12.3521 25 1 1.1559 0.3558 10.1281 26 6 1.7527 -6.0330 4.1234 27 6 0.7984 -6.2478 5.2999 28 6 2.2393 -6.7581 5.3796 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 2.6264 -2.2363 3.0836 39 1 0.5817 -4.1299 2.6338 40 1 2.0312 -4.6507 1.7416 41 1 1.0690 -3.2216 4.9465 42 1 1.4717 -2.3829 7.0876 43 1 3.1746 -3.8575 8.7911 44 1 4.1090 -2.5147 8.0897 45 1 2.4169 -0.9033 8.9185 46 1 1.4820 -2.2457 9.6203 47 1 3.4513 -0.4195 13.4801 48 1 1.5900 -6.6322 3.2275 49 1 0.5387 -5.3774 5.9026 50 1 0.0082 -6.9885 5.1782 51 1 2.3964 -7.8345 5.3103 52 1 2.9276 -6.2238 6.0343 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495251266.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:55 Heat of formation + Delta-G solvation = -115.463419 kcal Electronic energy + Delta-G solvation = -30434.325616 eV Core-core repulsion = 26240.930577 eV Total energy + Delta-G solvation = -4193.395039 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.87768 -41.36677 -39.02920 -38.14440 -36.48579 -36.14996 -35.09511 -34.79308 -34.21075 -31.98294 -30.20959 -28.33008 -28.27912 -26.70921 -25.11975 -23.27420 -22.91442 -22.65446 -22.26279 -21.31509 -20.77443 -19.59887 -19.06891 -18.87611 -17.74369 -17.46528 -17.32608 -17.07517 -16.37780 -16.17566 -16.07728 -15.66613 -15.56870 -15.31673 -15.12723 -15.01944 -14.61068 -14.51672 -14.32832 -13.86284 -13.35151 -13.33079 -13.16684 -13.04052 -12.98627 -12.89382 -12.86766 -12.84226 -12.44674 -12.35511 -12.27993 -12.12971 -12.10469 -11.75317 -11.52038 -11.36689 -11.35574 -11.13442 -11.06415 -10.89294 -10.77608 -10.26023 -10.19989 -9.77541 -8.28750 -6.35712 1.15385 1.39690 1.42193 1.53239 1.69427 1.77638 2.18939 2.37561 2.90745 3.06498 3.12882 3.36586 3.51294 3.77207 3.82646 3.93377 3.97366 4.08405 4.25557 4.27108 4.37495 4.45069 4.48713 4.54214 4.63092 4.64553 4.74619 4.78796 4.79457 4.84966 4.87589 4.90020 4.90861 5.01956 5.10254 5.17111 5.22861 5.27222 5.30818 5.37657 5.40688 5.44474 5.51789 5.53450 5.58444 5.70552 6.02516 6.24688 6.34158 6.72004 7.14198 7.28816 7.31926 7.64653 8.88053 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009219 B = 0.002566 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.394812 B =10909.334837 C =13215.834214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.125 3.875 3 C -0.139 4.139 4 C -0.179 4.179 5 O -0.373 6.373 6 C 0.647 3.353 7 O -0.588 6.588 8 N -0.704 5.704 9 C 0.144 3.856 10 C 0.190 3.810 11 H 0.085 0.915 12 N -0.728 5.728 13 C 0.702 3.298 14 O -0.623 6.623 15 N -0.732 5.732 16 C 0.167 3.833 17 C -0.012 4.012 18 C -0.537 4.537 19 H 0.029 0.971 20 C 0.003 3.997 21 N -0.951 5.951 22 Si 0.959 3.041 23 H -0.266 1.266 24 H -0.288 1.288 25 H -0.236 1.236 26 C -0.155 4.155 27 C -0.167 4.167 28 C -0.202 4.202 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.412 0.588 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.410 0.590 42 H 0.408 0.592 43 H 0.040 0.960 44 H 0.041 0.959 45 H 0.036 0.964 46 H 0.034 0.966 47 H 0.267 0.733 48 H 0.137 0.863 49 H 0.086 0.914 50 H 0.105 0.895 51 H 0.095 0.905 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.872 -0.610 -30.560 32.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.089 3.911 3 C -0.196 4.196 4 C -0.236 4.236 5 O -0.288 6.288 6 C 0.401 3.599 7 O -0.479 6.479 8 N -0.364 5.364 9 C 0.022 3.978 10 C 0.084 3.916 11 H 0.103 0.897 12 N -0.385 5.385 13 C 0.403 3.597 14 O -0.504 6.504 15 N -0.387 5.387 16 C 0.043 3.957 17 C -0.050 4.050 18 C -0.576 4.576 19 H 0.047 0.953 20 C -0.193 4.193 21 N -0.591 5.591 22 Si 0.781 3.219 23 H -0.191 1.191 24 H -0.214 1.214 25 H -0.159 1.159 26 C -0.175 4.175 27 C -0.204 4.204 28 C -0.239 4.239 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.248 0.752 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.247 0.753 42 H 0.244 0.756 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.076 0.924 48 H 0.155 0.845 49 H 0.104 0.896 50 H 0.124 0.876 51 H 0.113 0.887 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.268 -1.329 -30.795 32.489 hybrid contribution -0.428 0.810 1.099 1.430 sum -10.696 -0.520 -29.696 31.568 Atomic orbital electron populations 1.22465 0.93724 1.03866 1.03510 1.22397 0.94720 0.92483 0.81526 1.21901 1.02321 0.91132 1.04229 1.22469 1.01510 1.02373 0.97247 1.86335 1.71615 1.23400 1.47468 1.18196 0.78718 0.80751 0.82251 1.90898 1.42105 1.70902 1.43976 1.44708 1.55349 1.12895 1.23405 1.21596 1.01088 0.78875 0.96280 1.20487 0.99995 0.87808 0.83267 0.89707 1.45029 1.28646 1.49500 1.15340 1.16052 0.83019 0.80065 0.80613 1.90858 1.28526 1.48615 1.82388 1.45146 1.29531 1.48037 1.16027 1.20821 0.93099 0.98794 0.83005 1.19638 0.96464 0.95812 0.93040 1.21259 1.09554 1.26232 1.00513 0.95271 1.26075 1.00979 0.97921 0.94375 1.70078 1.41110 1.41030 1.06916 0.85545 0.78549 0.77750 0.80038 1.19112 1.21407 1.15930 1.22669 1.04447 0.96172 0.94217 1.22941 0.93004 1.03237 1.01219 1.23264 0.98545 1.00431 1.01679 0.92143 0.89213 0.91501 0.91496 0.87938 0.91482 0.91537 0.89158 0.92212 0.75249 0.89311 0.88582 0.75335 0.75624 0.94166 0.94020 0.94570 0.94807 0.92384 0.84523 0.89601 0.87638 0.88665 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 8.37 71.98 0.60 -2.02 16 2 C 0.12 1.93 1.13 -10.79 -0.01 1.92 16 3 C -0.14 -1.50 8.85 71.98 0.64 -0.86 16 4 C -0.18 -2.64 8.37 71.98 0.60 -2.04 16 5 O -0.37 -7.34 9.94 -55.39 -0.55 -7.89 16 6 C 0.65 13.05 8.06 129.79 1.05 14.09 16 7 O -0.59 -13.84 11.88 19.79 0.24 -13.61 16 8 N -0.70 -11.14 5.39 -590.84 -3.19 -14.33 16 9 C 0.14 1.89 5.21 86.38 0.45 2.34 16 10 C 0.19 3.12 2.59 44.99 0.12 3.23 16 11 H 0.08 1.76 7.58 -2.39 -0.02 1.75 16 12 N -0.73 -13.26 3.05 -457.81 -1.40 -14.66 16 13 C 0.70 19.90 7.40 179.06 1.33 21.23 16 14 O -0.62 -23.12 13.37 -3.99 -0.05 -23.18 16 15 N -0.73 -21.27 5.56 -478.54 -2.66 -23.93 16 16 C 0.17 6.60 5.61 86.38 0.48 7.09 16 17 C -0.01 -0.51 4.16 29.85 0.12 -0.38 16 18 C -0.54 -30.33 9.66 25.60 0.25 -30.08 16 19 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 20 C 0.00 0.20 5.47 84.65 0.46 0.66 16 21 N -0.95 -59.09 13.96 21.45 0.30 -58.79 16 22 Si 0.96 41.93 27.47 68.60 1.88 43.82 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 24 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.24 -9.12 6.54 99.48 0.65 -8.47 16 26 C -0.16 -2.53 5.70 -10.79 -0.06 -2.59 16 27 C -0.17 -3.07 9.74 30.62 0.30 -2.77 16 28 C -0.20 -4.65 9.82 30.62 0.30 -4.35 16 29 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.29 5.88 -2.39 -0.01 1.28 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 1.29 5.88 -2.38 -0.01 1.28 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.41 6.41 8.24 -92.71 -0.76 5.65 16 39 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.41 5.45 8.62 -92.71 -0.80 4.65 16 42 H 0.41 9.17 8.49 -92.71 -0.79 8.38 16 43 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.04 1.48 7.20 -2.39 -0.02 1.46 16 46 H 0.03 1.37 7.57 -2.38 -0.02 1.35 16 47 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 48 H 0.14 1.57 8.11 -2.38 -0.02 1.55 16 49 H 0.09 1.74 6.67 -2.39 -0.02 1.72 16 50 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 52 H 0.09 2.78 5.01 -2.39 -0.01 2.77 16 Total: -1.00 -74.48 412.93 -0.27 -74.74 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: -1.46 Total: 32.34 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 6.63 Total: 5.47 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -6.95 Total: -111.70 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -0.37 Total: -44.67 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.88 Total: 43.82 kcal Total: -74.48 -0.27 -74.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495251266.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.718 kcal (2) G-P(sol) polarization free energy of solvation -74.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds