Wall clock time and date at job start Wed Apr 1 2020 00:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47339 * 2 1 4 4 C 1.53000 * 109.47118 * 240.00075 * 2 1 3 5 5 O 1.45202 * 109.47037 * 120.00103 * 2 1 3 6 6 C 1.34637 * 117.00048 * 60.00284 * 5 2 1 7 7 O 1.21514 * 119.99758 * 359.97438 * 6 5 2 8 8 N 1.34775 * 119.99571 * 179.97438 * 6 5 2 9 9 C 1.46502 * 119.99540 * 174.95164 * 8 6 5 10 10 C 1.53002 * 112.85114 * 294.90735 * 9 8 6 11 11 N 1.46507 * 109.46843 * 293.92132 * 10 9 8 12 12 C 1.34779 * 119.99842 * 183.24433 * 11 10 9 13 13 O 1.21589 * 120.00017 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99774 * 179.97438 * 12 11 10 15 15 C 1.46502 * 119.99757 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.46967 * 180.02562 * 15 14 12 17 17 C 1.50700 * 109.47153 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00002 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00176 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99863 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99983 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47019 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.46921 * 119.99961 * 21 19 17 24 24 H 1.48505 * 109.47068 * 239.99926 * 21 19 17 25 25 C 1.53783 * 113.61559 * 66.10338 * 9 8 6 26 26 C 1.53951 * 87.01985 * 89.22897 * 25 9 8 27 27 C 1.53783 * 113.61348 * 163.71239 * 9 8 6 28 28 H 1.08998 * 109.46705 * 299.99829 * 1 2 3 29 29 H 1.08992 * 109.46895 * 59.99975 * 1 2 3 30 30 H 1.08993 * 109.46974 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47281 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46867 * 300.00077 * 3 2 1 33 33 H 1.08996 * 109.46981 * 59.99867 * 3 2 1 34 34 H 1.08999 * 109.47461 * 300.00107 * 4 2 1 35 35 H 1.09000 * 109.47249 * 59.99823 * 4 2 1 36 36 H 1.08997 * 109.47208 * 180.02562 * 4 2 1 37 37 H 0.96995 * 120.00619 * 354.95046 * 8 6 5 38 38 H 1.08993 * 109.47223 * 173.92241 * 10 9 8 39 39 H 1.08998 * 109.47114 * 53.91368 * 10 9 8 40 40 H 0.96995 * 119.99772 * 3.24904 * 11 10 9 41 41 H 0.96998 * 120.00405 * 0.02562 * 14 12 11 42 42 H 1.09005 * 109.46899 * 300.00320 * 15 14 12 43 43 H 1.09002 * 109.47152 * 60.00273 * 15 14 12 44 44 H 1.08992 * 109.47459 * 300.00066 * 16 15 14 45 45 H 1.09002 * 109.47091 * 60.00077 * 16 15 14 46 46 H 0.97000 * 120.00190 * 180.02562 * 20 19 17 47 47 H 1.09003 * 113.61086 * 203.74808 * 25 9 8 48 48 H 1.08997 * 113.61227 * 334.64563 * 25 9 8 49 49 H 1.08998 * 113.53625 * 270.81545 * 26 25 9 50 50 H 1.08995 * 113.66626 * 139.93086 * 26 25 9 51 51 H 1.08995 * 113.61434 * 25.34345 * 27 9 8 52 52 H 1.08997 * 113.61066 * 156.25426 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9724 1.3383 7 8 0.9509 -2.5095 0.5039 8 7 2.0681 -2.6657 2.4166 9 6 1.5858 -4.0308 2.6403 10 6 0.0809 -4.0927 2.9094 11 7 -0.2153 -3.4291 4.1816 12 6 -1.4760 -3.4178 4.6582 13 8 -2.3673 -3.9587 4.0326 14 7 -1.7484 -2.8079 5.8287 15 6 -3.1186 -2.7961 6.3471 16 6 -3.1534 -2.0444 7.6792 17 6 -4.5630 -2.0317 8.2121 18 1 -5.3548 -2.5121 7.6564 19 6 -4.8419 -1.4067 9.4090 20 7 -3.8779 -0.8212 10.0854 21 14 -6.5891 -1.3916 10.0699 22 1 -7.4811 -2.1133 9.1272 23 1 -6.6228 -2.0611 11.3950 24 1 -7.0523 0.0122 10.2125 25 6 2.0633 -5.0348 1.5777 26 6 3.2962 -5.2695 2.4694 27 6 2.4262 -4.8224 3.6562 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 2.6867 -2.2609 3.0446 38 1 -0.2366 -5.1341 2.9602 39 1 -0.4532 -3.5887 2.1039 40 1 0.4958 -2.9980 4.6807 41 1 -1.0373 -2.3768 6.3280 42 1 -3.7733 -2.2980 5.6319 43 1 -3.4586 -3.8206 6.4986 44 1 -2.4987 -2.5420 8.3944 45 1 -2.8136 -1.0199 7.5272 46 1 -4.0740 -0.3819 10.9276 47 1 1.4199 -5.9095 1.4832 48 1 2.2987 -4.5755 0.6177 49 1 4.1234 -4.5929 2.2552 50 1 3.6048 -6.3135 2.5232 51 1 2.9543 -4.1920 4.3715 52 1 1.8823 -5.6390 4.1308 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495267317.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:44 Heat of formation + Delta-G solvation = -103.241976 kcal Electronic energy + Delta-G solvation = -30795.737643 eV Core-core repulsion = 26602.872566 eV Total energy + Delta-G solvation = -4192.865078 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.34796 -40.01527 -39.11869 -36.91038 -34.95751 -34.53773 -34.09816 -33.09844 -32.76564 -29.77148 -27.80922 -27.67790 -27.59933 -26.18892 -24.69451 -23.66004 -22.36036 -21.00146 -20.52359 -20.27236 -19.56925 -18.43440 -18.08377 -16.72202 -16.41484 -16.35584 -16.16466 -15.69967 -15.18053 -15.16542 -14.81467 -14.53222 -14.49846 -14.24576 -13.84601 -13.75941 -13.51580 -13.18115 -12.82384 -12.74596 -12.57827 -12.47484 -12.28318 -12.18017 -12.17172 -12.10742 -11.75591 -11.56439 -11.29003 -11.17355 -11.15190 -11.03017 -10.74478 -10.59958 -10.58556 -10.30078 -10.14367 -9.89633 -9.56011 -9.40066 -9.21723 -8.93835 -8.46526 -8.19945 -6.07841 -4.10093 1.85006 2.63925 3.05273 3.29658 3.37236 3.43080 3.65311 3.77117 4.01034 4.20516 4.40750 4.41818 4.44450 4.46182 4.49981 4.63893 4.79557 4.94741 5.19028 5.26362 5.28936 5.29446 5.33951 5.38623 5.41220 5.45036 5.51265 5.53693 5.60925 5.62148 5.70548 5.72973 5.80721 5.92352 6.01169 6.11736 6.22376 6.33053 6.34083 6.43411 6.64085 6.81157 7.04806 7.15044 7.27554 7.59626 7.65759 7.91915 8.17399 8.28470 8.48358 8.95431 9.05709 9.54630 11.03943 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012011 B = 0.002311 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.541144 B =12113.710640 C =13557.913327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.138 3.862 3 C -0.141 4.141 4 C -0.182 4.182 5 O -0.366 6.366 6 C 0.655 3.345 7 O -0.557 6.557 8 N -0.692 5.692 9 C 0.156 3.844 10 C 0.141 3.859 11 N -0.750 5.750 12 C 0.698 3.302 13 O -0.597 6.597 14 N -0.739 5.739 15 C 0.141 3.859 16 C 0.013 3.987 17 C -0.519 4.519 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.896 3.104 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.131 4.131 26 C -0.140 4.140 27 C -0.133 4.133 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.406 0.594 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.391 0.609 41 H 0.392 0.608 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.022 0.978 45 H 0.021 0.979 46 H 0.261 0.739 47 H 0.096 0.904 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.074 0.926 51 H 0.077 0.923 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.253 -1.875 -19.852 29.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.101 3.899 3 C -0.198 4.198 4 C -0.239 4.239 5 O -0.281 6.281 6 C 0.408 3.592 7 O -0.445 6.445 8 N -0.351 5.351 9 C 0.069 3.931 10 C 0.015 3.985 11 N -0.406 5.406 12 C 0.398 3.602 13 O -0.476 6.476 14 N -0.393 5.393 15 C 0.018 3.982 16 C -0.024 4.024 17 C -0.558 4.558 18 H 0.078 0.922 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.170 4.170 26 C -0.178 4.178 27 C -0.171 4.171 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.242 0.758 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.224 0.776 41 H 0.225 0.775 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.040 0.960 45 H 0.040 0.960 46 H 0.071 0.929 47 H 0.114 0.886 48 H 0.099 0.901 49 H 0.099 0.901 50 H 0.093 0.907 51 H 0.095 0.905 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 20.029 -2.464 -20.739 28.937 hybrid contribution 0.014 0.844 1.208 1.473 sum 20.043 -1.620 -19.532 28.033 Atomic orbital electron populations 1.22521 0.93705 1.05310 1.02656 1.22073 0.94541 0.91404 0.81847 1.21867 1.02053 0.92616 1.03302 1.22508 1.01295 1.03579 0.96556 1.86296 1.71691 1.23479 1.46621 1.18026 0.78638 0.80449 0.82080 1.90915 1.40579 1.70249 1.42798 1.44332 1.50514 1.14315 1.25961 1.21536 0.92946 0.80052 0.98531 1.21404 0.92743 0.98508 0.85819 1.44990 1.08633 1.62258 1.24725 1.16059 0.82549 0.79919 0.81699 1.90895 1.45278 1.51176 1.60232 1.45517 1.12769 1.59169 1.21809 1.21576 0.78910 1.00725 0.97019 1.19323 0.98047 0.95355 0.89720 1.21102 0.93691 1.35301 1.05669 0.92168 1.24998 0.97413 0.95183 0.96757 1.69966 1.31900 1.36308 1.15245 0.86462 0.84532 0.77765 0.78841 1.19557 1.20947 1.20959 1.23235 0.97202 0.98448 0.98134 1.22906 0.96962 1.02025 0.95900 1.23243 0.97609 0.99882 0.96355 0.91998 0.91159 0.89244 0.91587 0.90126 0.91328 0.89327 0.91160 0.92355 0.75824 0.90416 0.90542 0.77640 0.77532 0.92880 0.92805 0.95992 0.96024 0.92946 0.88604 0.90080 0.90119 0.90748 0.90456 0.87773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 8.37 37.16 0.31 -1.60 16 2 C 0.14 1.28 1.13 -90.62 -0.10 1.18 16 3 C -0.14 -0.98 8.85 37.16 0.33 -0.65 16 4 C -0.18 -1.55 8.37 37.16 0.31 -1.24 16 5 O -0.37 -3.88 9.94 -40.32 -0.40 -4.28 16 6 C 0.65 7.25 7.57 54.05 0.41 7.66 16 7 O -0.56 -7.33 9.72 -19.28 -0.19 -7.51 16 8 N -0.69 -5.80 5.16 -51.70 -0.27 -6.07 16 9 C 0.16 1.31 0.50 -131.00 -0.07 1.25 16 10 C 0.14 1.72 4.99 -4.04 -0.02 1.70 16 11 N -0.75 -9.77 5.43 -65.22 -0.35 -10.12 16 12 C 0.70 12.66 8.57 -86.92 -0.74 11.92 16 13 O -0.60 -13.41 16.34 5.29 0.09 -13.32 16 14 N -0.74 -13.42 5.56 -65.22 -0.36 -13.78 16 15 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 16 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 17 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 18 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 21 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C -0.13 -1.03 6.97 -25.83 -0.18 -1.21 16 26 C -0.14 -0.82 8.00 -25.83 -0.21 -1.03 16 27 C -0.13 -0.82 7.17 -25.91 -0.19 -1.00 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 1.15 5.88 -51.93 -0.31 0.84 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.94 5.88 -51.93 -0.31 0.63 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.41 2.52 8.76 -40.82 -0.36 2.16 16 38 H 0.08 0.97 8.05 -51.93 -0.42 0.55 16 39 H 0.08 1.17 6.91 -51.93 -0.36 0.81 16 40 H 0.39 4.01 8.42 -40.82 -0.34 3.66 16 41 H 0.39 6.09 8.49 -40.82 -0.35 5.75 16 42 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.10 0.72 8.04 -51.93 -0.42 0.30 16 48 H 0.08 0.76 7.27 -51.93 -0.38 0.38 16 49 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.08 0.38 8.09 -51.93 -0.42 -0.04 16 52 H 0.10 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 417.84 15.07 6.30 6.30 Total: -1.00 -34.38 417.84 -9.30 -43.68 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -9.11 Total: 7.22 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -0.72 Total: 6.89 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.25 Total: -55.53 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.50 Total: -25.11 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.38 -9.30 -43.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495267317.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.558 kcal (2) G-P(sol) polarization free energy of solvation -34.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds