Wall clock time and date at job start Wed Apr 1 2020 00:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47339 * 2 1 4 4 C 1.53000 * 109.47118 * 240.00075 * 2 1 3 5 5 O 1.45202 * 109.47037 * 120.00103 * 2 1 3 6 6 C 1.34637 * 117.00048 * 60.00284 * 5 2 1 7 7 O 1.21514 * 119.99758 * 359.97438 * 6 5 2 8 8 N 1.34775 * 119.99571 * 179.97438 * 6 5 2 9 9 C 1.46502 * 119.99540 * 174.95164 * 8 6 5 10 10 C 1.53002 * 112.85114 * 294.90735 * 9 8 6 11 11 N 1.46507 * 109.46843 * 293.92132 * 10 9 8 12 12 C 1.34779 * 119.99842 * 183.24433 * 11 10 9 13 13 O 1.21589 * 120.00017 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99774 * 179.97438 * 12 11 10 15 15 C 1.46502 * 119.99757 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.46967 * 180.02562 * 15 14 12 17 17 C 1.50700 * 109.47153 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00002 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00176 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99863 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99983 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47019 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.46921 * 119.99961 * 21 19 17 24 24 H 1.48505 * 109.47068 * 239.99926 * 21 19 17 25 25 C 1.53783 * 113.61559 * 66.10338 * 9 8 6 26 26 C 1.53951 * 87.01985 * 89.22897 * 25 9 8 27 27 C 1.53783 * 113.61348 * 163.71239 * 9 8 6 28 28 H 1.08998 * 109.46705 * 299.99829 * 1 2 3 29 29 H 1.08992 * 109.46895 * 59.99975 * 1 2 3 30 30 H 1.08993 * 109.46974 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47281 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46867 * 300.00077 * 3 2 1 33 33 H 1.08996 * 109.46981 * 59.99867 * 3 2 1 34 34 H 1.08999 * 109.47461 * 300.00107 * 4 2 1 35 35 H 1.09000 * 109.47249 * 59.99823 * 4 2 1 36 36 H 1.08997 * 109.47208 * 180.02562 * 4 2 1 37 37 H 0.96995 * 120.00619 * 354.95046 * 8 6 5 38 38 H 1.08993 * 109.47223 * 173.92241 * 10 9 8 39 39 H 1.08998 * 109.47114 * 53.91368 * 10 9 8 40 40 H 0.96995 * 119.99772 * 3.24904 * 11 10 9 41 41 H 0.96998 * 120.00405 * 0.02562 * 14 12 11 42 42 H 1.09005 * 109.46899 * 300.00320 * 15 14 12 43 43 H 1.09002 * 109.47152 * 60.00273 * 15 14 12 44 44 H 1.08992 * 109.47459 * 300.00066 * 16 15 14 45 45 H 1.09002 * 109.47091 * 60.00077 * 16 15 14 46 46 H 0.97000 * 120.00190 * 180.02562 * 20 19 17 47 47 H 1.09003 * 113.61086 * 203.74808 * 25 9 8 48 48 H 1.08997 * 113.61227 * 334.64563 * 25 9 8 49 49 H 1.08998 * 113.53625 * 270.81545 * 26 25 9 50 50 H 1.08995 * 113.66626 * 139.93086 * 26 25 9 51 51 H 1.08995 * 113.61434 * 25.34345 * 27 9 8 52 52 H 1.08997 * 113.61066 * 156.25426 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9724 1.3383 7 8 0.9509 -2.5095 0.5039 8 7 2.0681 -2.6657 2.4166 9 6 1.5858 -4.0308 2.6403 10 6 0.0809 -4.0927 2.9094 11 7 -0.2153 -3.4291 4.1816 12 6 -1.4760 -3.4178 4.6582 13 8 -2.3673 -3.9587 4.0326 14 7 -1.7484 -2.8079 5.8287 15 6 -3.1186 -2.7961 6.3471 16 6 -3.1534 -2.0444 7.6792 17 6 -4.5630 -2.0317 8.2121 18 1 -5.3548 -2.5121 7.6564 19 6 -4.8419 -1.4067 9.4090 20 7 -3.8779 -0.8212 10.0854 21 14 -6.5891 -1.3916 10.0699 22 1 -7.4811 -2.1133 9.1272 23 1 -6.6228 -2.0611 11.3950 24 1 -7.0523 0.0122 10.2125 25 6 2.0633 -5.0348 1.5777 26 6 3.2962 -5.2695 2.4694 27 6 2.4262 -4.8224 3.6562 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 2.6867 -2.2609 3.0446 38 1 -0.2366 -5.1341 2.9602 39 1 -0.4532 -3.5887 2.1039 40 1 0.4958 -2.9980 4.6807 41 1 -1.0373 -2.3768 6.3280 42 1 -3.7733 -2.2980 5.6319 43 1 -3.4586 -3.8206 6.4986 44 1 -2.4987 -2.5420 8.3944 45 1 -2.8136 -1.0199 7.5272 46 1 -4.0740 -0.3819 10.9276 47 1 1.4199 -5.9095 1.4832 48 1 2.2987 -4.5755 0.6177 49 1 4.1234 -4.5929 2.2552 50 1 3.6048 -6.3135 2.5232 51 1 2.9543 -4.1920 4.3715 52 1 1.8823 -5.6390 4.1308 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495267317.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:43 Heat of formation + Delta-G solvation = -128.518562 kcal Electronic energy + Delta-G solvation = -30796.833718 eV Core-core repulsion = 26602.872566 eV Total energy + Delta-G solvation = -4193.961153 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.15748 -41.08402 -40.26276 -37.71302 -36.68285 -35.44076 -35.32206 -34.78587 -33.84035 -31.60159 -28.96345 -28.37875 -28.29591 -26.81394 -26.51416 -24.60560 -23.22802 -22.76558 -21.97958 -21.06660 -20.32686 -19.47572 -19.22911 -18.43056 -17.61026 -17.28392 -17.12089 -16.85071 -16.49858 -16.47645 -15.96995 -15.63058 -15.36114 -15.31796 -15.17985 -15.16566 -14.58910 -14.36042 -14.28011 -13.77861 -13.38137 -13.30523 -13.20818 -13.19735 -12.96038 -12.93831 -12.86544 -12.82842 -12.51974 -12.51040 -12.32502 -12.24495 -11.86532 -11.79655 -11.69161 -11.50474 -11.40131 -11.35605 -11.22130 -10.97580 -10.61086 -10.36719 -10.18409 -9.72672 -8.24227 -6.34172 1.10241 1.40984 1.41892 1.55007 1.72354 1.78933 2.15511 2.41325 3.06280 3.10639 3.24922 3.43495 3.63671 3.70521 3.74718 3.79594 3.90094 3.94144 4.30531 4.42218 4.48065 4.51664 4.54520 4.60557 4.70958 4.75465 4.76147 4.81946 4.84047 4.85897 4.86275 4.87506 5.00756 5.04428 5.12717 5.13846 5.22204 5.27269 5.30474 5.34038 5.44036 5.50427 5.51480 5.59500 5.65499 5.78848 6.01854 6.17467 6.41188 6.78926 7.11663 7.35119 7.37711 7.58603 8.87948 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012011 B = 0.002311 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.541144 B =12113.710640 C =13557.913327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.129 3.871 3 C -0.136 4.136 4 C -0.176 4.176 5 O -0.370 6.370 6 C 0.646 3.354 7 O -0.582 6.582 8 N -0.679 5.679 9 C 0.155 3.845 10 C 0.144 3.856 11 N -0.724 5.724 12 C 0.696 3.304 13 O -0.642 6.642 14 N -0.731 5.731 15 C 0.161 3.839 16 C 0.026 3.974 17 C -0.546 4.546 18 H 0.057 0.943 19 C 0.008 3.992 20 N -0.926 5.926 21 Si 0.964 3.036 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.277 1.277 25 C -0.135 4.135 26 C -0.126 4.126 27 C -0.122 4.122 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.420 0.580 38 H 0.075 0.925 39 H 0.042 0.958 40 H 0.409 0.591 41 H 0.407 0.593 42 H 0.039 0.961 43 H 0.044 0.956 44 H 0.011 0.989 45 H 0.008 0.992 46 H 0.266 0.734 47 H 0.096 0.904 48 H 0.063 0.937 49 H 0.088 0.912 50 H 0.087 0.913 51 H 0.099 0.901 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.815 -1.608 -19.555 30.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.093 3.907 3 C -0.193 4.193 4 C -0.233 4.233 5 O -0.285 6.285 6 C 0.400 3.600 7 O -0.472 6.472 8 N -0.339 5.339 9 C 0.068 3.932 10 C 0.018 3.982 11 N -0.381 5.381 12 C 0.396 3.604 13 O -0.524 6.524 14 N -0.386 5.386 15 C 0.036 3.964 16 C -0.012 4.012 17 C -0.584 4.584 18 H 0.075 0.925 19 C -0.191 4.191 20 N -0.566 5.566 21 Si 0.789 3.211 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.202 1.202 25 C -0.174 4.174 26 C -0.163 4.163 27 C -0.160 4.160 28 H 0.070 0.930 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.258 0.742 38 H 0.093 0.907 39 H 0.060 0.940 40 H 0.245 0.755 41 H 0.242 0.758 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.030 0.970 45 H 0.026 0.974 46 H 0.075 0.925 47 H 0.114 0.886 48 H 0.082 0.918 49 H 0.107 0.893 50 H 0.106 0.894 51 H 0.117 0.883 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 21.679 -2.175 -20.427 29.866 hybrid contribution -0.460 0.771 1.047 1.379 sum 21.219 -1.404 -19.380 28.771 Atomic orbital electron populations 1.22479 0.94921 1.03419 1.03065 1.22330 0.93745 0.92818 0.81833 1.21882 1.02649 0.90738 1.04055 1.22436 1.01761 1.02182 0.96911 1.86303 1.71658 1.23181 1.47316 1.18310 0.78549 0.80691 0.82447 1.90914 1.41673 1.70754 1.43876 1.44265 1.50155 1.14131 1.25385 1.21590 0.90668 0.80472 1.00440 1.21442 0.95273 0.97548 0.83927 1.44754 1.07263 1.61303 1.24753 1.16193 0.83532 0.79434 0.81232 1.90867 1.47121 1.53024 1.61375 1.45181 1.11778 1.59508 1.22155 1.21068 0.80728 0.99345 0.95234 1.19115 0.96656 0.94684 0.90746 1.21488 0.94939 1.35689 1.06299 0.92454 1.25853 1.01707 0.94601 0.96945 1.70057 1.33983 1.36790 1.15727 0.85405 0.79354 0.78054 0.78279 1.19109 1.20067 1.20210 1.23270 0.98596 0.98071 0.97476 1.22848 0.96028 1.03086 0.94370 1.23248 0.96859 0.99504 0.96359 0.93022 0.89294 0.92187 0.90611 0.88209 0.91754 0.91787 0.89469 0.91439 0.74242 0.90713 0.94004 0.75534 0.75770 0.94303 0.93750 0.97036 0.97383 0.92516 0.88562 0.91814 0.89342 0.89419 0.88288 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.84 8.37 71.98 0.60 -3.23 16 2 C 0.13 2.33 1.13 -10.79 -0.01 2.32 16 3 C -0.14 -1.66 8.85 71.98 0.64 -1.02 16 4 C -0.18 -2.89 8.37 71.98 0.60 -2.28 16 5 O -0.37 -7.69 9.94 -55.46 -0.55 -8.24 16 6 C 0.65 14.41 7.57 129.79 0.98 15.40 16 7 O -0.58 -16.08 9.72 19.80 0.19 -15.89 16 8 N -0.68 -10.72 5.16 -547.90 -2.82 -13.54 16 9 C 0.15 2.47 0.50 4.13 0.00 2.47 16 10 C 0.14 3.53 4.99 86.38 0.43 3.96 16 11 N -0.72 -18.46 5.43 -478.52 -2.60 -21.06 16 12 C 0.70 25.35 8.57 179.05 1.53 26.88 16 13 O -0.64 -29.51 16.34 -4.00 -0.07 -29.58 16 14 N -0.73 -26.48 5.56 -478.52 -2.66 -29.15 16 15 C 0.16 7.20 5.61 86.38 0.48 7.68 16 16 C 0.03 1.30 5.09 29.85 0.15 1.45 16 17 C -0.55 -30.89 9.11 25.60 0.23 -30.65 16 18 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 19 C 0.01 0.43 5.46 84.65 0.46 0.90 16 20 N -0.93 -54.32 13.29 21.45 0.28 -54.03 16 21 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 C -0.14 -2.03 6.97 31.18 0.22 -1.82 16 26 C -0.13 -1.15 8.00 31.18 0.25 -0.90 16 27 C -0.12 -1.17 7.17 31.12 0.22 -0.95 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.64 5.88 -2.39 -0.01 1.63 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 1.40 5.88 -2.39 -0.01 1.39 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.42 4.34 8.76 -92.71 -0.81 3.52 16 38 H 0.07 1.90 8.05 -2.39 -0.02 1.88 16 39 H 0.04 1.35 6.91 -2.39 -0.02 1.33 16 40 H 0.41 7.64 8.42 -92.71 -0.78 6.86 16 41 H 0.41 12.30 8.49 -92.71 -0.79 11.51 16 42 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 47 H 0.10 1.42 8.04 -2.39 -0.02 1.40 16 48 H 0.06 1.20 7.27 -2.39 -0.02 1.19 16 49 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.10 0.58 8.09 -2.39 -0.02 0.56 16 52 H 0.11 1.07 8.10 -2.39 -0.02 1.05 16 Total: -1.00 -76.08 417.84 -0.84 -76.92 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: -1.44 Total: 28.38 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 6.80 Total: 20.20 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -7.80 Total: -117.78 kcal Atomic # 8 Polarization: -53.29 SS G_CDS: -0.42 Total: -53.71 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -76.08 -0.84 -76.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495267317.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.600 kcal (2) G-P(sol) polarization free energy of solvation -76.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds